Strain Fitness in Pantoea sp. MT58 around IAI47_16880

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
3,572,303	-		IAI47_16875	0.17	+1.1
3,572,362	+		IAI47_16875	0.22	-1.0
3,572,366	+		IAI47_16875	0.23	+1.0
3,572,366	+		IAI47_16875	0.23	-2.0
3,572,366	+		IAI47_16875	0.23	+0.8
3,572,366	+		IAI47_16875	0.23	+0.1
3,572,366	+		IAI47_16875	0.23	+0.5
3,572,366	+		IAI47_16875	0.23	-0.4
3,572,367	-		IAI47_16875	0.23	+0.7
3,572,367	-		IAI47_16875	0.23	-0.9
3,572,367	-		IAI47_16875	0.23	-0.5
3,572,367	-		IAI47_16875	0.23	-0.3
3,572,367	-		IAI47_16875	0.23	-1.5
3,572,436	+		IAI47_16875	0.29	-0.2
3,572,436	+		IAI47_16875	0.29	-0.0
3,572,437	-		IAI47_16875	0.29	+0.6
3,572,437	-		IAI47_16875	0.29	+0.4
3,572,656	+		IAI47_16875	0.47	+1.0
3,572,656	+		IAI47_16875	0.47	+0.6
3,572,657	-		IAI47_16875	0.47	-0.5
3,572,657	-		IAI47_16875	0.47	-0.1
3,572,686	+		IAI47_16875	0.50	+0.8
3,572,687	-		IAI47_16875	0.50	-1.0
3,572,687	-		IAI47_16875	0.50	+0.2
3,572,742	+		IAI47_16875	0.54	-2.3
3,572,771	+		IAI47_16875	0.57	+0.2
3,572,771	+		IAI47_16875	0.57	-1.4
3,572,771	+		IAI47_16875	0.57	+1.8
3,572,772	-		IAI47_16875	0.57	-0.6
3,572,772	-		IAI47_16875	0.57	-0.5
3,572,772	-		IAI47_16875	0.57	-1.3
3,572,806	-		IAI47_16875	0.60	+2.1
3,572,806	-		IAI47_16875	0.60	+2.1
3,572,806	-		IAI47_16875	0.60	-2.7
3,572,806	-		IAI47_16875	0.60	-0.2
3,572,806	-		IAI47_16875	0.60	-0.5
3,572,806	-		IAI47_16875	0.60	-0.4
3,572,930	+		IAI47_16875	0.70	+1.2
3,572,930	+		IAI47_16875	0.70	+1.6
3,572,930	+		IAI47_16875	0.70	-1.7
3,572,931	-		IAI47_16875	0.70	+0.0
3,572,931	-		IAI47_16875	0.70	-1.1
3,572,931	-		IAI47_16875	0.70	+0.8
3,572,946	-		IAI47_16875	0.71	-1.2
3,572,965	+		IAI47_16875	0.73	-0.1
3,572,973	+		IAI47_16875	0.74	+2.2
3,572,973	+		IAI47_16875	0.74	-1.1
3,572,974	-		IAI47_16875	0.74	-0.8
3,572,975	+		IAI47_16875	0.74	-1.0
3,572,975	+		IAI47_16875	0.74	-0.4
3,572,976	-		IAI47_16875	0.74	-1.0
3,573,033	+		IAI47_16875	0.79	-0.3
3,573,033	+		IAI47_16875	0.79	+1.0
3,573,033	+		IAI47_16875	0.79	+0.3
3,573,034	-		IAI47_16875	0.79	-1.2
3,573,034	-		IAI47_16875	0.79	+0.7
3,573,036	+		IAI47_16875	0.79	-0.0
3,573,037	-		IAI47_16875	0.79	-0.1
3,573,105	+		IAI47_16875	0.85	+0.1
3,573,105	+		IAI47_16875	0.85	+0.3
3,573,105	+		IAI47_16875	0.85	-0.1
3,573,105	+		IAI47_16875	0.85	+0.8
3,573,106	-		IAI47_16875	0.85	-0.7
3,573,107	+		IAI47_16875	0.85	-0.6
3,573,107	+		IAI47_16875	0.85	-0.3
3,573,108	-		IAI47_16875	0.85	-1.5
3,573,108	-		IAI47_16875	0.85	+1.2
3,573,108	-		IAI47_16875	0.85	+0.3
3,573,108	-		IAI47_16875	0.85	-1.2
3,573,130	+		IAI47_16875	0.87	+0.7
3,573,130	+		IAI47_16875	0.87	+1.6
3,573,130	+		IAI47_16875	0.87	-1.5
3,573,131	-		IAI47_16875	0.87	+0.1
3,573,131	-		IAI47_16875	0.87	-0.3
3,573,156	-		IAI47_16875	0.89	+1.1
3,573,173	-				-0.2
3,573,270	+				+1.8
3,573,271	-				-1.7
3,573,271	-				-0.3
3,573,322	+				-0.0
3,573,641	+		IAI47_16880	0.17	+0.8
3,573,642	-		IAI47_16880	0.17	-0.7
3,573,655	+		IAI47_16880	0.17	+1.1
3,573,655	+		IAI47_16880	0.17	+2.6
3,573,655	+		IAI47_16880	0.17	-1.2
3,573,656	-		IAI47_16880	0.17	-0.6
3,573,656	-		IAI47_16880	0.17	+2.3
3,573,674	+		IAI47_16880	0.18	+0.7
3,573,733	+		IAI47_16880	0.21	-0.5
3,573,734	-		IAI47_16880	0.21	-1.0
3,573,866	+		IAI47_16880	0.27	+0.3
3,573,867	-		IAI47_16880	0.27	+0.1
3,573,902	-		IAI47_16880	0.29	-0.4
3,573,925	+		IAI47_16880	0.30	+0.4
3,573,925	+		IAI47_16880	0.30	+0.6
3,573,925	+		IAI47_16880	0.30	-2.0
3,573,925	+		IAI47_16880	0.30	+0.4
3,573,925	+		IAI47_16880	0.30	+0.4
3,573,926	-		IAI47_16880	0.30	-0.7
3,573,926	-		IAI47_16880	0.30	+0.7
3,573,926	-		IAI47_16880	0.30	+0.5
3,573,926	-		IAI47_16880	0.30	-0.2
3,573,926	-		IAI47_16880	0.30	+0.3
3,573,936	-		IAI47_16880	0.30	+0.0
3,573,937	+		IAI47_16880	0.30	+0.9
3,573,937	+		IAI47_16880	0.30	+0.2
3,573,937	+		IAI47_16880	0.30	-0.6
3,573,937	+		IAI47_16880	0.30	+1.9
3,573,937	+		IAI47_16880	0.30	-1.2
3,573,937	+		IAI47_16880	0.30	-0.3
3,573,937	+		IAI47_16880	0.30	-0.7
3,573,938	-		IAI47_16880	0.30	-0.4
3,573,938	-		IAI47_16880	0.30	+0.7
3,573,938	-		IAI47_16880	0.30	+0.1
3,573,938	-		IAI47_16880	0.30	+0.7
3,573,938	-		IAI47_16880	0.30	+0.6
3,573,938	-		IAI47_16880	0.30	+0.5
3,573,985	+		IAI47_16880	0.33	+1.3
3,573,985	+		IAI47_16880	0.33	+1.2
3,573,985	+		IAI47_16880	0.33	+1.5
3,573,985	+		IAI47_16880	0.33	+0.8
3,573,985	+		IAI47_16880	0.33	+0.3
3,573,986	-		IAI47_16880	0.33	+1.0
3,573,986	-		IAI47_16880	0.33	-0.5
3,574,027	+		IAI47_16880	0.35	-0.2
3,574,027	+		IAI47_16880	0.35	+1.1
3,574,028	-		IAI47_16880	0.35	-0.5
3,574,028	-		IAI47_16880	0.35	+0.3
3,574,028	-		IAI47_16880	0.35	+0.8
3,574,028	-		IAI47_16880	0.35	+1.9
3,574,031	+		IAI47_16880	0.35	+0.8
3,574,032	-		IAI47_16880	0.35	+1.8
3,574,070	+		IAI47_16880	0.37	-0.0
3,574,070	+		IAI47_16880	0.37	-0.7
3,574,070	+		IAI47_16880	0.37	+0.3
3,574,071	-		IAI47_16880	0.37	-1.4
3,574,071	-		IAI47_16880	0.37	-0.4
3,574,071	-		IAI47_16880	0.37	-0.5
3,574,071	-		IAI47_16880	0.37	+0.3
3,574,071	-		IAI47_16880	0.37	+1.5
3,574,071	-		IAI47_16880	0.37	+0.8
3,574,079	-		IAI47_16880	0.37	-1.3
3,574,120	+		IAI47_16880	0.39	-1.4
3,574,155	-		IAI47_16880	0.41	-0.5
3,574,206	-		IAI47_16880	0.43	-0.6
3,574,206	-		IAI47_16880	0.43	-0.5
3,574,206	-		IAI47_16880	0.43	-0.7
3,574,272	-		IAI47_16880	0.46	+0.1
3,574,292	+		IAI47_16880	0.47	+0.7
3,574,293	-		IAI47_16880	0.47	-0.3
3,574,316	+		IAI47_16880	0.48	-0.5
3,574,317	-		IAI47_16880	0.48	+1.3
3,574,317	-		IAI47_16880	0.48	-0.7
3,574,353	+		IAI47_16880	0.50	+1.8
3,574,353	+		IAI47_16880	0.50	-0.7
3,574,353	+		IAI47_16880	0.50	-0.6
3,574,354	-		IAI47_16880	0.50	-0.6
3,574,418	+		IAI47_16880	0.53	-0.2
3,574,418	+		IAI47_16880	0.53	+1.1
3,574,419	-		IAI47_16880	0.53	+0.9
3,574,438	+		IAI47_16880	0.54	+3.7
3,574,438	+		IAI47_16880	0.54	+1.0
3,574,439	-		IAI47_16880	0.54	-0.2
3,574,524	-		IAI47_16880	0.58	-0.1
3,574,571	+		IAI47_16880	0.60	-0.7
3,574,573	+		IAI47_16880	0.60	-1.0
3,574,573	+		IAI47_16880	0.60	-0.2
3,574,573	+		IAI47_16880	0.60	+0.1
3,574,573	+		IAI47_16880	0.60	+0.1
3,574,574	-		IAI47_16880	0.60	-0.2
3,574,574	-		IAI47_16880	0.60	+0.7
3,574,574	-		IAI47_16880	0.60	-0.1
3,574,574	-		IAI47_16880	0.60	-0.6
3,574,574	-		IAI47_16880	0.60	+0.4
3,574,574	-		IAI47_16880	0.60	-0.0
3,574,640	+		IAI47_16880	0.63	+0.4
3,574,640	+		IAI47_16880	0.63	+0.0
3,574,640	+		IAI47_16880	0.63	-0.2
3,574,640	+		IAI47_16880	0.63	-0.7
3,574,640	+		IAI47_16880	0.63	-2.0
3,574,641	-		IAI47_16880	0.63	-0.2
3,574,641	-		IAI47_16880	0.63	-1.5
3,574,641	-		IAI47_16880	0.63	+0.6
3,574,641	-		IAI47_16880	0.63	-0.4
3,574,643	+		IAI47_16880	0.63	-1.0
3,574,644	-		IAI47_16880	0.63	+0.1
3,574,644	-		IAI47_16880	0.63	-1.0
3,574,681	+		IAI47_16880	0.65	+2.4
3,574,681	+		IAI47_16880	0.65	+0.5
3,574,694	+		IAI47_16880	0.66	+0.3
3,574,694	+		IAI47_16880	0.66	-0.1
3,574,695	-		IAI47_16880	0.66	-0.3
3,574,701	+		IAI47_16880	0.66	+0.1
3,574,732	+		IAI47_16880	0.67	-0.2
3,574,732	+		IAI47_16880	0.67	-2.0
3,574,732	+		IAI47_16880	0.67	-0.9
3,574,732	+		IAI47_16880	0.67	-1.0
3,574,732	+		IAI47_16880	0.67	+0.5
3,574,732	+		IAI47_16880	0.67	-0.4
3,574,732	+		IAI47_16880	0.67	-0.7
3,574,732	+		IAI47_16880	0.67	-0.5
3,574,732	+		IAI47_16880	0.67	-0.2
3,574,732	+		IAI47_16880	0.67	+1.8
3,574,733	-		IAI47_16880	0.67	-2.1
3,574,733	-		IAI47_16880	0.67	-0.5
3,574,733	-		IAI47_16880	0.67	-1.3
3,574,733	-		IAI47_16880	0.67	+1.3
3,574,733	-		IAI47_16880	0.67	-0.3
3,574,733	-		IAI47_16880	0.67	+0.4
3,574,733	-		IAI47_16880	0.67	-0.1
3,574,733	-		IAI47_16880	0.67	-1.2
3,574,733	-		IAI47_16880	0.67	+0.4
3,574,733	-		IAI47_16880	0.67	-1.2
3,574,733	-		IAI47_16880	0.67	-0.4
3,574,772	+		IAI47_16880	0.69	-0.4
3,574,772	+		IAI47_16880	0.69	-0.9
3,574,772	+		IAI47_16880	0.69	-0.3
3,574,773	-		IAI47_16880	0.69	-0.4
3,574,783	+		IAI47_16880	0.70	+1.2
3,574,784	-		IAI47_16880	0.70	+1.0
3,574,976	+		IAI47_16880	0.79	-0.7
3,574,977	-		IAI47_16880	0.79	+0.1
3,575,008	+		IAI47_16880	0.80	-0.5
3,575,008	+		IAI47_16880	0.80	-0.0
3,575,108	+		IAI47_16880	0.85	+0.3
3,575,108	+		IAI47_16880	0.85	-0.6
3,575,108	+		IAI47_16880	0.85	+0.2
3,575,109	-		IAI47_16880	0.85	+0.6
3,575,109	-		IAI47_16880	0.85	+0.3
3,575,109	-		IAI47_16880	0.85	-0.2
3,575,109	-		IAI47_16880	0.85	-0.7
3,575,109	-		IAI47_16880	0.85	-1.0
3,575,109	-		IAI47_16880	0.85	-0.4
3,575,147	+		IAI47_16880	0.87	-0.7
3,575,213	+		IAI47_16880	0.90	-1.0
3,575,222	+				-0.2
3,575,234	+				-2.2
3,575,234	+				-0.5
3,575,234	+				+2.1
3,575,235	-				-0.7
3,575,280	-				-1.3
3,575,293	-				+0.4
3,575,324	+				-0.6
3,575,324	+				-0.3
3,575,324	+				+0.8
3,575,324	+				+1.8
3,575,324	+				+0.4
3,575,324	+				-2.2
3,575,324	+				-0.6
3,575,325	-				+0.5
3,575,325	-				+1.6
3,575,325	-				-1.2
3,575,325	-				-0.5
3,575,325	-				+0.4
3,575,325	-				+0.0
3,575,325	-				+0.8
3,575,325	-				-0.8
3,575,325	-				+0.4
3,575,325	-				-0.1
3,575,325	-				-0.8
3,575,325	-				+0.8
3,575,325	-				+0.4
3,575,325	-				-1.0
3,575,325	-				-0.7
3,575,325	-				+0.6
3,575,343	+				+1.2
3,575,343	+				+0.8
3,575,343	+				+0.3
3,575,343	+				-0.7
3,575,343	+				-0.7
3,575,343	+				-1.2
3,575,344	-				-1.2
3,575,344	-				-0.9
3,575,344	-				+0.5
3,575,344	-				+0.8
3,575,344	-				+1.0
3,575,354	+				+0.5
3,575,354	+				-1.5
3,575,355	-				+0.4
3,575,395	-				-0.3
3,575,443	+				+0.1
3,575,444	-				-0.2
3,575,444	-				+0.0
3,575,444	-				-0.0
3,575,459	-				+0.6
3,575,501	+				+2.1
3,575,502	-				+0.8
3,575,516	-				-0.6
3,575,652	+				+0.4
3,575,652	+				+0.7
3,575,653	-				-1.6
3,575,653	-				+2.1
3,575,653	-				-0.2
3,575,673	+		IAI47_16885	0.11	+0.4
3,575,673	+		IAI47_16885	0.11	-0.0
3,575,673	+		IAI47_16885	0.11	-0.1
3,575,673	+		IAI47_16885	0.11	+0.0
3,575,673	+		IAI47_16885	0.11	+0.4
3,575,674	-		IAI47_16885	0.11	-0.7
3,575,674	-		IAI47_16885	0.11	+0.4
3,575,674	-		IAI47_16885	0.11	-0.9
3,575,674	-		IAI47_16885	0.11	+1.0
3,575,770	+		IAI47_16885	0.18	+0.2
3,575,770	+		IAI47_16885	0.18	-0.9
3,575,770	+		IAI47_16885	0.18	-0.7
3,575,770	+		IAI47_16885	0.18	-2.7
3,575,771	-		IAI47_16885	0.18	-0.2
3,575,771	-		IAI47_16885	0.18	+0.3
3,575,771	-		IAI47_16885	0.18	+0.3
3,575,811	+		IAI47_16885	0.21	+1.7
3,575,811	+		IAI47_16885	0.21	+0.4
3,575,811	+		IAI47_16885	0.21	-0.3
3,575,812	-		IAI47_16885	0.21	+0.1
3,575,812	-		IAI47_16885	0.21	+0.9
3,575,819	+		IAI47_16885	0.21	-0.2
3,575,820	-		IAI47_16885	0.22	+1.1
3,575,887	+		IAI47_16885	0.26	-0.1
3,575,888	-		IAI47_16885	0.26	+0.6
3,575,894	+		IAI47_16885	0.27	+1.4
3,575,994	+		IAI47_16885	0.34	+0.7
3,575,994	+		IAI47_16885	0.34	-0.6
3,575,994	+		IAI47_16885	0.34	-0.9
3,575,994	+		IAI47_16885	0.34	-1.5
3,575,995	-		IAI47_16885	0.34	-0.6
3,575,995	-		IAI47_16885	0.34	-0.7
3,575,995	-		IAI47_16885	0.34	+1.0
3,575,997	+		IAI47_16885	0.34	+0.4
3,575,997	+		IAI47_16885	0.34	+0.3
3,575,997	+		IAI47_16885	0.34	-0.7
3,576,040	+		IAI47_16885	0.37	-0.6
3,576,040	+		IAI47_16885	0.37	+1.3
3,576,041	-		IAI47_16885	0.37	-0.2
3,576,041	-		IAI47_16885	0.37	+0.8
3,576,041	-		IAI47_16885	0.37	+0.7
3,576,041	-		IAI47_16885	0.37	+0.3
3,576,043	+		IAI47_16885	0.38	-1.6
3,576,043	+		IAI47_16885	0.38	-1.0
3,576,043	+		IAI47_16885	0.38	-2.2
3,576,043	+		IAI47_16885	0.38	-1.2
3,576,043	+		IAI47_16885	0.38	-2.3
3,576,044	-		IAI47_16885	0.38	-1.2
3,576,044	-		IAI47_16885	0.38	+0.6
3,576,055	-		IAI47_16885	0.38	+0.0
3,576,077	+		IAI47_16885	0.40	-0.7
3,576,211	+		IAI47_16885	0.50	-1.2
3,576,213	+		IAI47_16885	0.50	-1.0
3,576,213	+		IAI47_16885	0.50	-0.6
3,576,213	+		IAI47_16885	0.50	+0.6
3,576,214	-		IAI47_16885	0.50	+0.1
3,576,214	-		IAI47_16885	0.50	+0.4
3,576,214	-		IAI47_16885	0.50	-0.3
3,576,214	-		IAI47_16885	0.50	-0.3
3,576,294	+		IAI47_16885	0.56	+0.9
3,576,295	-		IAI47_16885	0.56	-1.5
3,576,304	+		IAI47_16885	0.56	+0.1
3,576,305	-		IAI47_16885	0.56	+0.3
3,576,318	+		IAI47_16885	0.57	-0.2
3,576,318	+		IAI47_16885	0.57	+0.3
3,576,318	+		IAI47_16885	0.57	+0.3
3,576,319	-		IAI47_16885	0.58	+0.3
3,576,319	-		IAI47_16885	0.58	-0.4
3,576,319	-		IAI47_16885	0.58	-0.5
3,576,326	-		IAI47_16885	0.58	+1.1
3,576,327	+		IAI47_16885	0.58	-0.5
3,576,327	+		IAI47_16885	0.58	+0.6
3,576,327	+		IAI47_16885	0.58	+0.5
3,576,327	+		IAI47_16885	0.58	-0.4
3,576,328	-		IAI47_16885	0.58	-0.7
3,576,328	-		IAI47_16885	0.58	-1.2
3,576,349	-		IAI47_16885	0.60	+0.8
3,576,349	-		IAI47_16885	0.60	-1.5
3,576,349	-		IAI47_16885	0.60	-0.6
3,576,349	-		IAI47_16885	0.60	-0.2
3,576,387	+		IAI47_16885	0.62	-0.5
3,576,387	+		IAI47_16885	0.62	+1.4