Strain Fitness in Pantoea sp. MT58 around IAI47_16480

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
3,490,653	+		IAI47_16475	0.40	-2.0
3,490,653	+		IAI47_16475	0.40	-0.7
3,490,653	+		IAI47_16475	0.40	+1.0
3,490,653	+		IAI47_16475	0.40	+0.8
3,490,654	-		IAI47_16475	0.40	+0.4
3,490,654	-		IAI47_16475	0.40	-0.8
3,490,654	-		IAI47_16475	0.40	+1.6
3,490,654	-		IAI47_16475	0.40	+0.2
3,490,654	-		IAI47_16475	0.40	+0.8
3,490,654	-		IAI47_16475	0.40	+0.3
3,490,654	-		IAI47_16475	0.40	-0.6
3,490,654	-		IAI47_16475	0.40	+0.4
3,490,654	-		IAI47_16475	0.40	+0.8
3,490,654	-		IAI47_16475	0.40	+1.0
3,490,699	+		IAI47_16475	0.44	-1.8
3,490,699	+		IAI47_16475	0.44	+0.4
3,490,699	+		IAI47_16475	0.44	-0.2
3,490,699	+		IAI47_16475	0.44	-1.8
3,490,699	+		IAI47_16475	0.44	-0.7
3,490,699	+		IAI47_16475	0.44	+0.7
3,490,699	+		IAI47_16475	0.44	+0.8
3,490,700	-		IAI47_16475	0.44	-0.4
3,490,700	-		IAI47_16475	0.44	+1.0
3,490,700	-		IAI47_16475	0.44	-0.3
3,490,700	-		IAI47_16475	0.44	+1.1
3,490,700	-		IAI47_16475	0.44	-0.7
3,490,705	-		IAI47_16475	0.44	-0.0
3,490,705	-		IAI47_16475	0.44	+0.2
3,490,722	-		IAI47_16475	0.45	-0.5
3,490,736	+		IAI47_16475	0.46	+0.3
3,490,736	+		IAI47_16475	0.46	-0.4
3,490,736	+		IAI47_16475	0.46	-1.0
3,490,737	-		IAI47_16475	0.47	-0.2
3,490,737	-		IAI47_16475	0.47	+1.8
3,490,737	-		IAI47_16475	0.47	+0.5
3,490,737	-		IAI47_16475	0.47	+1.8
3,490,737	-		IAI47_16475	0.47	+0.8
3,490,778	+		IAI47_16475	0.50	-0.7
3,490,778	+		IAI47_16475	0.50	+0.6
3,490,779	-		IAI47_16475	0.50	+1.6
3,490,779	-		IAI47_16475	0.50	+0.1
3,490,779	-		IAI47_16475	0.50	+0.8
3,490,779	-		IAI47_16475	0.50	+1.1
3,490,779	-		IAI47_16475	0.50	-1.3
3,490,779	-		IAI47_16475	0.50	-1.8
3,490,836	-		IAI47_16475	0.54	+0.5
3,490,836	-		IAI47_16475	0.54	-0.4
3,490,870	-		IAI47_16475	0.57	+0.6
3,490,901	-		IAI47_16475	0.60	-0.9
3,490,901	-		IAI47_16475	0.60	-1.0
3,490,912	+		IAI47_16475	0.61	-1.5
3,490,912	+		IAI47_16475	0.61	+0.1
3,490,913	-		IAI47_16475	0.61	+1.8
3,490,938	+		IAI47_16475	0.63	+0.5
3,490,938	+		IAI47_16475	0.63	-0.5
3,490,938	+		IAI47_16475	0.63	-1.5
3,490,938	+		IAI47_16475	0.63	+1.7
3,490,939	-		IAI47_16475	0.63	-0.3
3,490,939	-		IAI47_16475	0.63	-0.2
3,490,974	+		IAI47_16475	0.65	-1.2
3,490,974	+		IAI47_16475	0.65	+0.6
3,490,974	+		IAI47_16475	0.65	+0.2
3,490,975	-		IAI47_16475	0.66	-0.8
3,490,992	+		IAI47_16475	0.67	+0.4
3,490,992	+		IAI47_16475	0.67	-1.3
3,490,992	+		IAI47_16475	0.67	-0.5
3,490,993	-		IAI47_16475	0.67	+0.7
3,490,993	-		IAI47_16475	0.67	-0.2
3,490,993	-		IAI47_16475	0.67	-0.1
3,491,014	-		IAI47_16475	0.69	+1.0
3,491,038	-		IAI47_16475	0.71	-0.6
3,491,118	-		IAI47_16475	0.77	-0.8
3,491,118	-		IAI47_16475	0.77	-0.1
3,491,142	+		IAI47_16475	0.79	-0.0
3,491,142	+		IAI47_16475	0.79	+0.6
3,491,143	-		IAI47_16475	0.79	+1.4
3,491,183	+		IAI47_16475	0.82	+0.7
3,491,183	+		IAI47_16475	0.82	-1.2
3,491,183	+		IAI47_16475	0.82	-2.9
3,491,183	+		IAI47_16475	0.82	+2.0
3,491,183	+		IAI47_16475	0.82	-0.3
3,491,183	+		IAI47_16475	0.82	+0.8
3,491,183	+		IAI47_16475	0.82	+0.8
3,491,183	+		IAI47_16475	0.82	+0.1
3,491,183	+		IAI47_16475	0.82	+0.0
3,491,183	+		IAI47_16475	0.82	-0.6
3,491,184	-		IAI47_16475	0.82	-1.4
3,491,184	-		IAI47_16475	0.82	-0.2
3,491,184	-		IAI47_16475	0.82	-1.0
3,491,184	-		IAI47_16475	0.82	+1.1
3,491,184	-		IAI47_16475	0.82	+1.2
3,491,184	-		IAI47_16475	0.82	+2.2
3,491,184	-		IAI47_16475	0.82	-1.6
3,491,185	-		IAI47_16475	0.82	+0.5
3,491,235	-		IAI47_16475	0.86	+1.2
3,491,235	-		IAI47_16475	0.86	+1.3
3,491,235	-		IAI47_16475	0.86	+0.6
3,491,310	+				-0.0
3,491,310	+				-0.0
3,491,310	+				-1.5
3,491,311	-				+0.8
3,491,311	-				+2.7
3,491,320	+				-0.1
3,491,320	+				-0.9
3,491,320	+				+1.0
3,491,321	-				+0.5
3,491,321	-				-0.4
3,491,321	-				-0.2
3,491,321	-				-0.6
3,491,366	+				-0.5
3,491,366	+				+0.0
3,491,367	-				+0.5
3,491,367	-				-0.3
3,491,368	+				-0.4
3,491,368	+				-1.4
3,491,368	+				-2.0
3,491,368	+				-0.9
3,491,368	+				-1.1
3,491,368	+				+0.7
3,491,368	+				+0.2
3,491,368	+				+0.8
3,491,368	+				-0.5
3,491,368	+				-0.0
3,491,368	+				+1.6
3,491,368	+				-0.8
3,491,368	+				+1.2
3,491,369	-				-0.4
3,491,369	-				-0.6
3,491,369	-				-1.1
3,491,369	-				+0.3
3,491,369	-				+0.5
3,491,369	-				-0.9
3,491,369	-				+0.4
3,491,369	-				-0.6
3,491,369	-				+0.2
3,491,369	-				-0.2
3,491,369	-				+0.8
3,491,369	-				+1.1
3,491,369	-				+0.6
3,491,369	-				-0.6
3,491,369	-				+0.1
3,491,369	-				+0.8
3,491,369	-				+1.1
3,491,375	-				-0.2
3,491,409	-				-1.0
3,491,454	+				-0.2
3,491,455	-				+0.6
3,491,467	+				-1.8
3,491,488	-				-0.5
3,491,498	+				+0.5
3,491,498	+				+0.1
3,491,498	+				-0.8
3,491,498	+				+0.1
3,491,499	-				+0.5
3,491,499	-				+0.4
3,491,518	+				-0.6
3,491,518	+				-0.3
3,491,556	+				-0.8
3,491,556	+				-1.0
3,491,556	+				+0.1
3,491,557	-				+0.1
3,491,557	-				+0.3
3,491,557	-				-0.4
3,491,583	+				-0.6
3,491,584	-				+1.1
3,491,584	-				-0.1
3,491,584	-				+0.6
3,491,599	+				-0.8
3,491,695	+				+1.2
3,491,695	+				-1.1
3,491,695	+				-2.6
3,491,695	+				+0.0
3,491,695	+				-0.5
3,491,695	+				-2.0
3,491,695	+				-1.5
3,491,696	-				+0.4
3,491,696	-				-0.2
3,491,696	-				+0.0
3,491,728	+		IAI47_16480	0.12	+0.4
3,491,783	-		IAI47_16480	0.20	-1.3
3,491,783	-		IAI47_16480	0.20	+1.0
3,491,872	+		IAI47_16480	0.33	-1.6
3,491,872	+		IAI47_16480	0.33	+0.7
3,491,873	-		IAI47_16480	0.34	+1.9
3,491,873	-		IAI47_16480	0.34	-1.4
3,491,873	-		IAI47_16480	0.34	+0.2
3,491,873	-		IAI47_16480	0.34	+0.5
3,491,893	+		IAI47_16480	0.37	+0.2
3,491,893	+		IAI47_16480	0.37	+1.1
3,491,893	+		IAI47_16480	0.37	+0.7
3,491,893	+		IAI47_16480	0.37	-0.5
3,491,893	+		IAI47_16480	0.37	-0.5
3,491,893	+		IAI47_16480	0.37	+0.7
3,491,894	-		IAI47_16480	0.37	-0.6
3,491,894	-		IAI47_16480	0.37	-1.0
3,491,894	-		IAI47_16480	0.37	-0.1
3,491,896	-		IAI47_16480	0.37	+0.7
3,491,917	-		IAI47_16480	0.40	+0.8
3,492,249	+		IAI47_16480	0.90	-0.8
3,492,249	+		IAI47_16480	0.90	+0.8
3,492,249	+		IAI47_16480	0.90	-0.9
3,492,250	-				-0.7
3,492,250	-				-0.4
3,492,250	-				-1.5
3,492,293	+				-1.6
3,492,293	+				-0.3
3,492,295	+				-1.0
3,492,295	+				-2.0
3,492,295	+				-1.0
3,492,295	+				+0.4
3,492,295	+				+1.5
3,492,296	-				-1.8
3,492,296	-				-0.3
3,492,342	+				+0.2
3,492,343	-				+0.1
3,492,368	+				+2.7
3,492,368	+				+1.3
3,492,368	+				+0.1
3,492,369	-				+0.2
3,492,392	-				+1.1
3,492,412	+				-1.0
3,492,412	+				+1.0
3,492,435	+				-0.9
3,492,436	-				-0.1
3,492,474	-				+0.1
3,492,485	+				-0.2
3,492,486	-				+0.4
3,492,486	-				-0.8
3,492,486	-				-0.5
3,492,490	+				+1.1
3,492,568	-				+0.2
3,492,625	-				+0.8
3,492,631	+				+0.3
3,492,631	+				-0.3
3,492,631	+				+1.4
3,492,632	-				+0.6
3,492,632	-				-0.3
3,492,632	-				+1.2
3,492,632	-				-0.2
3,492,653	+				-0.2
3,492,653	+				-0.9
3,492,660	+				-1.4
3,492,660	+				-0.6
3,492,660	+				+0.3
3,492,660	+				+1.1
3,492,661	-				+0.0
3,492,736	-				+1.1
3,492,736	-				-0.3
3,492,747	+				-0.2
3,492,747	+				+0.0
3,492,747	+				-0.8
3,492,747	+				-0.5
3,492,747	+				+1.1
3,492,748	-				-1.0
3,492,748	-				-0.7
3,492,748	-				-1.8
3,492,748	-				+2.4
3,492,748	-				-0.3
3,492,756	+				+0.8
3,492,756	+				+0.3
3,492,763	+				-1.0
3,492,764	-				+0.8
3,492,781	-				+1.0
3,492,815	+				-0.3
3,492,838	-				+1.3
3,492,838	-				-0.8
3,492,838	-				+1.1
3,492,867	+		IAI47_16485	0.11	+1.0
3,492,867	+		IAI47_16485	0.11	-0.2
3,492,867	+		IAI47_16485	0.11	+0.8
3,492,868	-		IAI47_16485	0.11	-0.3
3,492,868	-		IAI47_16485	0.11	+0.8
3,492,922	+		IAI47_16485	0.15	+0.4
3,492,927	-		IAI47_16485	0.15	-0.8
3,492,992	+		IAI47_16485	0.19	+0.5
3,492,993	-		IAI47_16485	0.19	+0.1
3,493,005	-		IAI47_16485	0.20	+0.5
3,493,005	-		IAI47_16485	0.20	-1.2
3,493,007	+		IAI47_16485	0.20	+0.4
3,493,008	-		IAI47_16485	0.20	-0.0
3,493,051	-		IAI47_16485	0.23	-0.6
3,493,054	+		IAI47_16485	0.23	-2.0
3,493,055	-		IAI47_16485	0.23	-1.6
3,493,060	-		IAI47_16485	0.24	+1.4
3,493,060	-		IAI47_16485	0.24	-2.3
3,493,088	+		IAI47_16485	0.26	-0.7
3,493,089	-		IAI47_16485	0.26	-0.2
3,493,156	-		IAI47_16485	0.30	+1.4
3,493,159	-		IAI47_16485	0.30	+1.8
3,493,159	-		IAI47_16485	0.30	+0.1
3,493,159	-		IAI47_16485	0.30	-1.2
3,493,205	+		IAI47_16485	0.33	+0.5
3,493,205	+		IAI47_16485	0.33	+0.8
3,493,205	+		IAI47_16485	0.33	-0.4
3,493,206	-		IAI47_16485	0.33	+0.6
3,493,216	+		IAI47_16485	0.34	+0.1
3,493,216	+		IAI47_16485	0.34	+0.1
3,493,216	+		IAI47_16485	0.34	-0.5
3,493,217	-		IAI47_16485	0.34	+0.6
3,493,217	-		IAI47_16485	0.34	+0.6
3,493,217	-		IAI47_16485	0.34	+0.0
3,493,217	-		IAI47_16485	0.34	-0.5
3,493,218	+		IAI47_16485	0.34	-1.5
3,493,218	+		IAI47_16485	0.34	-0.0