Strain Fitness in Pantoea sp. MT58 around IAI47_15125

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
3,187,981	+		IAI47_15120	0.33	-1.5
3,187,982	-		IAI47_15120	0.33	-2.3
3,187,982	-		IAI47_15120	0.33	-1.2
3,188,077	+		IAI47_15120	0.41	-1.8
3,188,149	+		IAI47_15120	0.48	-0.2
3,188,149	+		IAI47_15120	0.48	-1.8
3,188,149	+		IAI47_15120	0.48	-0.8
3,188,149	+		IAI47_15120	0.48	-1.2
3,188,149	+		IAI47_15120	0.48	-2.0
3,188,150	-		IAI47_15120	0.48	+0.2
3,188,150	-		IAI47_15120	0.48	-0.8
3,188,150	-		IAI47_15120	0.48	-1.8
3,188,150	-		IAI47_15120	0.48	-2.6
3,188,150	-		IAI47_15120	0.48	-1.5
3,188,150	-		IAI47_15120	0.48	-1.5
3,188,150	-		IAI47_15120	0.48	-2.8
3,188,150	-		IAI47_15120	0.48	-0.8
3,188,150	-		IAI47_15120	0.48	-0.2
3,188,150	-		IAI47_15120	0.48	-0.2
3,188,341	+		IAI47_15120	0.65	-1.5
3,188,341	+		IAI47_15120	0.65	-1.2
3,188,341	+		IAI47_15120	0.65	-0.2
3,188,341	+		IAI47_15120	0.65	-3.3
3,188,341	+		IAI47_15120	0.65	-0.8
3,188,342	-		IAI47_15120	0.65	-1.5
3,188,342	-		IAI47_15120	0.65	-0.2
3,188,342	-		IAI47_15120	0.65	-2.5
3,188,434	+		IAI47_15120	0.74	-2.0
3,188,434	+		IAI47_15120	0.74	-0.2
3,188,434	+		IAI47_15120	0.74	-1.5
3,188,434	+		IAI47_15120	0.74	-1.2
3,188,441	-		IAI47_15120	0.74	-0.8
3,188,441	-		IAI47_15120	0.74	-2.0
3,188,441	-		IAI47_15120	0.74	-1.3
3,188,445	+		IAI47_15120	0.75	-1.2
3,188,445	+		IAI47_15120	0.75	-2.0
3,188,445	+		IAI47_15120	0.75	-1.2
3,188,445	+		IAI47_15120	0.75	-1.8
3,188,445	+		IAI47_15120	0.75	-1.2
3,188,446	-		IAI47_15120	0.75	-1.5
3,188,446	-		IAI47_15120	0.75	-0.8
3,188,449	+		IAI47_15120	0.75	-2.0
3,188,450	-		IAI47_15120	0.75	-2.2
3,188,456	+		IAI47_15120	0.76	-1.8
3,188,457	-		IAI47_15120	0.76	-2.2
3,188,457	-		IAI47_15120	0.76	-1.2
3,188,705	+				-2.2
3,188,706	-				-1.5
3,188,725	+				-1.8
3,188,725	+				-2.0
3,188,725	+				-2.8
3,188,726	-				-2.8
3,188,726	-				-1.5
3,188,726	-				-2.7
3,188,726	-				-2.6
3,188,833	+				-0.2
3,188,878	-				+0.2
3,188,878	-				-1.0
3,188,878	-				-0.4
3,188,899	+				-0.8
3,188,958	+				+0.8
3,188,958	+				-0.2
3,188,959	-				+0.5
3,189,036	+				-0.5
3,189,036	+				+1.4
3,189,037	-				-0.8
3,189,066	+				+0.1
3,189,090	+		IAI47_15125	0.11	-0.2
3,189,090	+		IAI47_15125	0.11	+0.2
3,189,090	+		IAI47_15125	0.11	+0.3
3,189,090	+		IAI47_15125	0.11	+0.3
3,189,091	-		IAI47_15125	0.11	+0.4
3,189,091	-		IAI47_15125	0.11	+0.1
3,189,091	-		IAI47_15125	0.11	-0.4
3,189,129	+		IAI47_15125	0.15	-0.2
3,189,129	+		IAI47_15125	0.15	-0.2
3,189,129	+		IAI47_15125	0.15	-0.6
3,189,129	+		IAI47_15125	0.15	-1.7
3,189,129	+		IAI47_15125	0.15	+1.4
3,189,129	+		IAI47_15125	0.15	-0.9
3,189,129	+		IAI47_15125	0.15	-0.5
3,189,130	-		IAI47_15125	0.15	-0.2
3,189,130	-		IAI47_15125	0.15	+0.1
3,189,130	-		IAI47_15125	0.15	-1.3
3,189,130	-		IAI47_15125	0.15	-1.1
3,189,130	-		IAI47_15125	0.15	+1.2
3,189,131	+		IAI47_15125	0.15	+0.0
3,189,137	+		IAI47_15125	0.16	-1.4
3,189,146	+		IAI47_15125	0.16	-0.5
3,189,165	-		IAI47_15125	0.18	-0.4
3,189,183	+		IAI47_15125	0.20	-0.5
3,189,184	-		IAI47_15125	0.20	+1.0
3,189,198	+		IAI47_15125	0.21	+0.1
3,189,198	+		IAI47_15125	0.21	+0.2
3,189,198	+		IAI47_15125	0.21	-0.7
3,189,199	-		IAI47_15125	0.21	-0.3
3,189,199	-		IAI47_15125	0.21	-0.0
3,189,199	-		IAI47_15125	0.21	+0.8
3,189,199	-		IAI47_15125	0.21	+1.2
3,189,199	-		IAI47_15125	0.21	-0.5
3,189,204	+		IAI47_15125	0.22	+0.9
3,189,204	+		IAI47_15125	0.22	+0.0
3,189,204	+		IAI47_15125	0.22	-0.4
3,189,204	+		IAI47_15125	0.22	+0.8
3,189,204	+		IAI47_15125	0.22	+1.1
3,189,205	-		IAI47_15125	0.22	-1.5
3,189,205	-		IAI47_15125	0.22	+1.3
3,189,205	-		IAI47_15125	0.22	-1.4
3,189,207	+		IAI47_15125	0.22	+0.6
3,189,212	+		IAI47_15125	0.22	+0.0
3,189,288	+		IAI47_15125	0.29	+0.2
3,189,299	-		IAI47_15125	0.30	-2.6
3,189,303	+		IAI47_15125	0.30	+0.8
3,189,303	+		IAI47_15125	0.30	+0.1
3,189,311	+		IAI47_15125	0.31	-0.3
3,189,311	+		IAI47_15125	0.31	+0.8
3,189,311	+		IAI47_15125	0.31	+1.5
3,189,312	-		IAI47_15125	0.31	+0.5
3,189,312	-		IAI47_15125	0.31	+0.4
3,189,312	-		IAI47_15125	0.31	+0.6
3,189,315	+		IAI47_15125	0.32	-0.2
3,189,315	+		IAI47_15125	0.32	-0.4
3,189,315	+		IAI47_15125	0.32	+1.4
3,189,315	+		IAI47_15125	0.32	-0.5
3,189,315	+		IAI47_15125	0.32	+0.1
3,189,315	+		IAI47_15125	0.32	+0.1
3,189,316	-		IAI47_15125	0.32	-0.5
3,189,316	-		IAI47_15125	0.32	+1.2
3,189,316	-		IAI47_15125	0.32	-1.1
3,189,316	-		IAI47_15125	0.32	+0.2
3,189,316	-		IAI47_15125	0.32	-1.2
3,189,327	+		IAI47_15125	0.33	+0.0
3,189,327	+		IAI47_15125	0.33	+0.6
3,189,327	+		IAI47_15125	0.33	+0.2
3,189,328	-		IAI47_15125	0.33	+0.5
3,189,328	-		IAI47_15125	0.33	+1.2
3,189,328	-		IAI47_15125	0.33	-1.0
3,189,352	+		IAI47_15125	0.35	-1.0
3,189,352	+		IAI47_15125	0.35	+0.1
3,189,352	+		IAI47_15125	0.35	+0.7
3,189,353	-		IAI47_15125	0.35	+0.1
3,189,353	-		IAI47_15125	0.35	+1.0
3,189,377	+		IAI47_15125	0.37	+0.6
3,189,378	-		IAI47_15125	0.37	-0.5
3,189,392	+		IAI47_15125	0.38	+0.1
3,189,392	+		IAI47_15125	0.38	-0.9
3,189,393	-		IAI47_15125	0.39	+0.0
3,189,398	+		IAI47_15125	0.39	+0.1
3,189,398	+		IAI47_15125	0.39	-0.2
3,189,398	+		IAI47_15125	0.39	+0.8
3,189,398	+		IAI47_15125	0.39	-0.2
3,189,399	-		IAI47_15125	0.39	+2.4
3,189,399	-		IAI47_15125	0.39	-0.2
3,189,399	-		IAI47_15125	0.39	-0.8
3,189,429	+		IAI47_15125	0.42	-0.7
3,189,429	+		IAI47_15125	0.42	+1.2
3,189,430	-		IAI47_15125	0.42	+0.6
3,189,430	-		IAI47_15125	0.42	-0.4
3,189,430	-		IAI47_15125	0.42	-1.2
3,189,430	-		IAI47_15125	0.42	+0.2
3,189,430	-		IAI47_15125	0.42	-0.3
3,189,434	+		IAI47_15125	0.42	-0.3
3,189,440	+		IAI47_15125	0.43	+0.4
3,189,440	+		IAI47_15125	0.43	+0.0
3,189,441	-		IAI47_15125	0.43	-0.2
3,189,441	-		IAI47_15125	0.43	-1.0
3,189,441	-		IAI47_15125	0.43	-0.5
3,189,441	-		IAI47_15125	0.43	+0.3
3,189,441	-		IAI47_15125	0.43	-0.2
3,189,441	-		IAI47_15125	0.43	-0.4
3,189,441	-		IAI47_15125	0.43	+0.2
3,189,483	+		IAI47_15125	0.47	-0.4
3,189,483	+		IAI47_15125	0.47	+0.2
3,189,484	-		IAI47_15125	0.47	-0.5
3,189,522	-		IAI47_15125	0.50	-0.2
3,189,522	-		IAI47_15125	0.50	-0.0
3,189,527	+		IAI47_15125	0.51	-0.5
3,189,527	+		IAI47_15125	0.51	+0.8
3,189,527	+		IAI47_15125	0.51	-2.3
3,189,527	+		IAI47_15125	0.51	-2.5
3,189,528	-		IAI47_15125	0.51	-0.9
3,189,528	-		IAI47_15125	0.51	-1.1
3,189,528	-		IAI47_15125	0.51	-0.2
3,189,528	-		IAI47_15125	0.51	-0.8
3,189,528	-		IAI47_15125	0.51	-0.3
3,189,528	-		IAI47_15125	0.51	+0.8
3,189,528	-		IAI47_15125	0.51	-0.5
3,189,530	+		IAI47_15125	0.51	+0.5
3,189,570	+		IAI47_15125	0.54	-0.8
3,189,571	-		IAI47_15125	0.55	-0.3
3,189,571	-		IAI47_15125	0.55	+1.5
3,189,652	-		IAI47_15125	0.62	-0.9
3,189,652	-		IAI47_15125	0.62	-1.2
3,189,696	+		IAI47_15125	0.66	+0.4
3,189,696	+		IAI47_15125	0.66	+1.1
3,189,696	+		IAI47_15125	0.66	+0.2
3,189,696	+		IAI47_15125	0.66	-0.0
3,189,696	+		IAI47_15125	0.66	+1.7
3,189,696	+		IAI47_15125	0.66	+0.1
3,189,696	+		IAI47_15125	0.66	-0.3
3,189,697	-		IAI47_15125	0.66	-0.5
3,189,697	-		IAI47_15125	0.66	-0.8
3,189,704	+		IAI47_15125	0.66	+0.1
3,189,704	+		IAI47_15125	0.66	+0.1
3,189,704	+		IAI47_15125	0.66	+0.2
3,189,704	+		IAI47_15125	0.66	+1.8
3,189,704	+		IAI47_15125	0.66	-0.5
3,189,704	+		IAI47_15125	0.66	+0.0
3,189,704	+		IAI47_15125	0.66	+0.2
3,189,704	+		IAI47_15125	0.66	+0.1
3,189,705	-		IAI47_15125	0.67	+0.8
3,189,705	-		IAI47_15125	0.67	-1.4
3,189,705	-		IAI47_15125	0.67	+0.1
3,189,705	-		IAI47_15125	0.67	-1.1
3,189,714	+		IAI47_15125	0.67	+1.2
3,189,714	+		IAI47_15125	0.67	-1.3
3,189,715	-		IAI47_15125	0.67	+0.8
3,189,715	-		IAI47_15125	0.67	-0.1
3,189,715	-		IAI47_15125	0.67	+0.4
3,189,729	+		IAI47_15125	0.69	+0.1
3,189,729	+		IAI47_15125	0.69	-0.5
3,189,729	+		IAI47_15125	0.69	-1.2
3,189,730	-		IAI47_15125	0.69	-0.5
3,189,730	-		IAI47_15125	0.69	-0.2
3,189,743	+		IAI47_15125	0.70	+0.2
3,189,743	+		IAI47_15125	0.70	-1.2
3,189,743	+		IAI47_15125	0.70	-0.3
3,189,744	-		IAI47_15125	0.70	-1.8
3,189,746	+		IAI47_15125	0.70	+0.9
3,189,746	+		IAI47_15125	0.70	+0.2
3,189,746	+		IAI47_15125	0.70	+0.9
3,189,747	-		IAI47_15125	0.70	+0.4
3,189,837	+		IAI47_15125	0.78	+0.7
3,189,837	+		IAI47_15125	0.78	-0.3
3,189,838	-		IAI47_15125	0.79	+0.6
3,189,873	+		IAI47_15125	0.82	-0.4
3,189,873	+		IAI47_15125	0.82	-0.4
3,189,874	-		IAI47_15125	0.82	+0.2
3,189,874	-		IAI47_15125	0.82	-0.4
3,189,874	-		IAI47_15125	0.82	-0.6
3,189,877	+		IAI47_15125	0.82	+0.8
3,189,877	+		IAI47_15125	0.82	-0.2
3,189,877	+		IAI47_15125	0.82	-0.9
3,189,877	+		IAI47_15125	0.82	-0.2
3,189,877	+		IAI47_15125	0.82	-0.1
3,189,877	+		IAI47_15125	0.82	-0.4
3,189,877	+		IAI47_15125	0.82	+2.2
3,189,877	+		IAI47_15125	0.82	+0.5
3,189,878	-		IAI47_15125	0.82	+0.2
3,189,878	-		IAI47_15125	0.82	-1.8
3,189,878	-		IAI47_15125	0.82	+1.5
3,189,878	-		IAI47_15125	0.82	+1.6
3,189,878	-		IAI47_15125	0.82	-0.4
3,189,896	+		IAI47_15125	0.84	+0.5
3,189,897	-		IAI47_15125	0.84	-0.5
3,189,909	-		IAI47_15125	0.85	-0.1
3,189,933	+		IAI47_15125	0.87	-0.3
3,189,933	+		IAI47_15125	0.87	-0.8
3,189,933	+		IAI47_15125	0.87	+0.8
3,189,934	-		IAI47_15125	0.87	+0.5
3,189,934	-		IAI47_15125	0.87	+0.4
3,189,934	-		IAI47_15125	0.87	-1.8
3,189,934	-		IAI47_15125	0.87	+0.3
3,189,934	-		IAI47_15125	0.87	-1.0
3,189,934	-		IAI47_15125	0.87	+0.3
3,189,934	-		IAI47_15125	0.87	+0.6
3,189,935	+		IAI47_15125	0.87	+1.1
3,189,936	-		IAI47_15125	0.87	+1.8
3,189,954	+		IAI47_15125	0.89	+0.4
3,189,954	+		IAI47_15125	0.89	-0.3
3,189,954	+		IAI47_15125	0.89	-0.6
3,189,954	+		IAI47_15125	0.89	+0.8
3,189,955	-		IAI47_15125	0.89	-0.0
3,189,955	-		IAI47_15125	0.89	-1.3
3,189,955	-		IAI47_15125	0.89	-0.5
3,189,957	+		IAI47_15125	0.89	+0.6
3,189,957	+		IAI47_15125	0.89	-0.8
3,189,957	+		IAI47_15125	0.89	-1.8
3,189,957	+		IAI47_15125	0.89	+0.2
3,189,958	-		IAI47_15125	0.89	-1.1
3,189,958	-		IAI47_15125	0.89	+0.0
3,189,958	-		IAI47_15125	0.89	-0.8
3,189,958	-		IAI47_15125	0.89	-0.5
3,189,958	-		IAI47_15125	0.89	-1.8
3,189,958	-		IAI47_15125	0.89	-0.3
3,189,971	+				+0.6
3,189,972	-				-0.2
3,189,972	-				+0.2
3,189,990	+				-0.2
3,189,991	-				-1.5
3,190,032	-				-0.4
3,190,065	+				-0.2
3,190,065	+				+1.6
3,190,065	+				+0.8
3,190,066	-				-0.3
3,190,066	-				+0.8
3,190,066	-				-0.7
3,190,066	-				-1.2
3,190,122	+				+0.2
3,190,316	+				+1.4
3,190,324	+				-0.2
3,190,324	+				+1.2
3,190,324	+				-1.0
3,190,324	+				-0.5
3,190,325	-				-0.4
3,190,325	-				+0.9
3,190,325	-				-0.2
3,190,329	+				-0.4
3,190,329	+				+0.6
3,190,329	+				-0.4
3,190,329	+				+0.4
3,190,330	-				+1.2
3,190,330	-				+1.1
3,190,335	-				+0.1
3,190,438	+		IAI47_15130	0.25	-2.2
3,190,507	-		IAI47_15130	0.43	+0.1
3,190,526	+		IAI47_15130	0.47	+0.5
3,190,526	+		IAI47_15130	0.47	-0.4
3,190,526	+		IAI47_15130	0.47	-0.4
3,190,526	+		IAI47_15130	0.47	-0.4
3,190,526	+		IAI47_15130	0.47	+0.2
3,190,526	+		IAI47_15130	0.47	-0.3
3,190,527	-		IAI47_15130	0.48	+0.5
3,190,527	-		IAI47_15130	0.48	+1.7
3,190,527	-		IAI47_15130	0.48	+1.0
3,190,527	-		IAI47_15130	0.48	+0.1
3,190,527	-		IAI47_15130	0.48	+1.1
3,190,527	-		IAI47_15130	0.48	+0.8
3,190,527	-		IAI47_15130	0.48	-0.8
3,190,527	-		IAI47_15130	0.48	+0.6
3,190,527	-		IAI47_15130	0.48	+0.7
3,190,527	-		IAI47_15130	0.48	+0.2
3,190,527	-		IAI47_15130	0.48	+0.0
3,190,527	-		IAI47_15130	0.48	+1.5
3,190,532	+		IAI47_15130	0.49	+0.4
3,190,532	+		IAI47_15130	0.49	+0.8
3,190,532	+		IAI47_15130	0.49	+0.6
3,190,532	+		IAI47_15130	0.49	+0.2
3,190,532	+		IAI47_15130	0.49	+1.0
3,190,532	+		IAI47_15130	0.49	-0.3
3,190,532	+		IAI47_15130	0.49	+0.3
3,190,532	+		IAI47_15130	0.49	-1.2
3,190,532	+		IAI47_15130	0.49	-0.0
3,190,532	+		IAI47_15130	0.49	+0.7
3,190,532	+		IAI47_15130	0.49	+1.1
3,190,533	-		IAI47_15130	0.49	+1.1
3,190,533	-		IAI47_15130	0.49	+1.2
3,190,533	-		IAI47_15130	0.49	+0.0
3,190,533	-		IAI47_15130	0.49	+0.1
3,190,533	-		IAI47_15130	0.49	+0.3
3,190,533	-		IAI47_15130	0.49	-0.6
3,190,533	-		IAI47_15130	0.49	+0.5
3,190,536	+		IAI47_15130	0.50	+1.8
3,190,536	+		IAI47_15130	0.50	+1.0
3,190,536	+		IAI47_15130	0.50	+0.5
3,190,536	+		IAI47_15130	0.50	-0.6
3,190,536	+		IAI47_15130	0.50	-0.5
3,190,536	+		IAI47_15130	0.50	-0.0
3,190,536	+		IAI47_15130	0.50	+0.5
3,190,536	+		IAI47_15130	0.50	+1.2
3,190,536	+		IAI47_15130	0.50	-0.4
3,190,536	+		IAI47_15130	0.50	+0.2
3,190,536	+		IAI47_15130	0.50	+0.1
3,190,537	-		IAI47_15130	0.50	+0.7
3,190,537	-		IAI47_15130	0.50	+0.5
3,190,537	-		IAI47_15130	0.50	+0.6
3,190,537	-		IAI47_15130	0.50	+1.1
3,190,537	-		IAI47_15130	0.50	+1.2
3,190,537	-		IAI47_15130	0.50	+0.6
3,190,671	+		IAI47_15130	0.83	-1.0
3,190,671	+		IAI47_15130	0.83	-0.6
3,190,671	+		IAI47_15130	0.83	+0.2
3,190,671	+		IAI47_15130	0.83	-1.3
3,190,672	-		IAI47_15130	0.84	+0.2
3,190,672	-		IAI47_15130	0.84	+1.0
3,190,672	-		IAI47_15130	0.84	+1.7
3,190,673	+		IAI47_15130	0.84	+0.2
3,190,673	+		IAI47_15130	0.84	+0.4
3,190,673	+		IAI47_15130	0.84	-0.5
3,190,673	+		IAI47_15130	0.84	+1.6
3,190,673	+		IAI47_15130	0.84	+1.1
3,190,674	-		IAI47_15130	0.84	+1.2
3,190,674	-		IAI47_15130	0.84	+0.1
3,190,698	+				+0.8
3,190,729	+				+0.2
3,190,729	+				-1.2
3,190,751	-				-0.5
3,190,751	-				+0.6
3,190,764	+				+0.2
3,190,765	-				+0.6
3,190,766	+				+1.1
3,190,766	+				+0.0
3,190,766	+				+1.0
3,190,766	+				+1.2
3,190,766	+				+0.2
3,190,766	+				+0.0
3,190,766	+				+0.2
3,190,767	-				-0.7
3,190,767	-				-0.6
3,190,767	-				-0.1
3,190,767	-				-0.4
3,190,767	-				+0.0
3,190,767	-				+0.1
3,190,767	-				+0.4
3,190,767	-				+1.0
3,190,767	-				+1.0
3,190,800	+				+0.0
3,190,800	+				-0.5
3,190,800	+				+1.7
3,190,801	-				+0.7
3,190,801	-				+0.1
3,190,827	-				-0.3
3,190,827	-				+0.2
3,190,827	-				+0.2
3,190,827	-				-0.3
3,190,827	-				+0.6
3,190,827	-				-1.0
3,190,836	-				+0.8
3,190,863	+				+0.5
3,190,863	+				+0.3
3,190,863	+				-0.6
3,190,863	+				+0.2
3,190,863	+				+0.3
3,190,863	+				+0.2
3,190,863	+				+1.2
3,190,863	+				+0.1
3,190,863	+				+0.3
3,190,864	-				-0.6
3,190,864	-				+1.1
3,190,864	-				+0.8
3,190,864	-				+0.4
3,190,864	-				-0.8
3,190,869	+				-1.3
3,190,870	-				+0.8
3,190,877	-				+0.0
3,191,014	-				-0.7
3,191,057	+		IAI47_15135	0.13	-0.2