Strain Fitness in Pantoea sp. MT58 around IAI47_09160

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
1,929,415	+				-0.1
1,929,415	+				+0.0
1,929,415	+				+1.5
1,929,415	+				+0.3
1,929,415	+				-0.8
1,929,416	-				-1.1
1,929,424	+				-0.4
1,929,424	+				+0.4
1,929,425	-				+0.0
1,929,425	-				+1.0
1,929,591	+				-2.2
1,929,602	+				-1.7
1,929,602	+				+0.2
1,929,603	-				+0.6
1,929,603	-				+1.5
1,929,804	+		IAI47_09155	0.30	+0.3
1,929,804	+		IAI47_09155	0.30	+1.5
1,929,804	+		IAI47_09155	0.30	+1.4
1,929,804	+		IAI47_09155	0.30	+0.2
1,929,805	-		IAI47_09155	0.30	-0.6
1,929,805	-		IAI47_09155	0.30	+0.5
1,929,805	-		IAI47_09155	0.30	-0.4
1,929,805	-		IAI47_09155	0.30	-0.2
1,929,808	+		IAI47_09155	0.30	-1.1
1,929,808	+		IAI47_09155	0.30	+0.2
1,929,808	+		IAI47_09155	0.30	+0.5
1,929,808	+		IAI47_09155	0.30	-1.0
1,929,808	+		IAI47_09155	0.30	+0.7
1,929,808	+		IAI47_09155	0.30	+1.3
1,929,808	+		IAI47_09155	0.30	+0.7
1,929,808	+		IAI47_09155	0.30	-0.1
1,929,808	+		IAI47_09155	0.30	-0.3
1,929,808	+		IAI47_09155	0.30	-2.0
1,929,808	+		IAI47_09155	0.30	+0.8
1,929,808	+		IAI47_09155	0.30	-0.5
1,929,809	-		IAI47_09155	0.30	+0.7
1,929,809	-		IAI47_09155	0.30	-2.3
1,929,809	-		IAI47_09155	0.30	+1.0
1,929,809	-		IAI47_09155	0.30	-0.6
1,929,809	-		IAI47_09155	0.30	+1.2
1,929,809	-		IAI47_09155	0.30	+0.7
1,929,809	-		IAI47_09155	0.30	+0.7
1,929,809	-		IAI47_09155	0.30	-2.4
1,929,809	-		IAI47_09155	0.30	+1.2
1,929,810	+		IAI47_09155	0.31	-0.6
1,929,810	+		IAI47_09155	0.31	-0.9
1,929,810	+		IAI47_09155	0.31	+2.0
1,929,810	+		IAI47_09155	0.31	+0.3
1,929,811	-		IAI47_09155	0.31	+1.9
1,929,864	+		IAI47_09155	0.39	-0.3
1,929,911	+		IAI47_09155	0.46	+0.7
1,929,911	+		IAI47_09155	0.46	-0.1
1,929,911	+		IAI47_09155	0.46	-1.8
1,929,934	+		IAI47_09155	0.50	+1.2
1,929,935	-		IAI47_09155	0.50	+0.5
1,929,937	+		IAI47_09155	0.50	+0.2
1,929,937	+		IAI47_09155	0.50	-1.6
1,929,957	+		IAI47_09155	0.54	+1.0
1,929,958	-		IAI47_09155	0.54	+0.6
1,929,958	-		IAI47_09155	0.54	+0.3
1,929,970	+		IAI47_09155	0.56	+0.3
1,929,970	+		IAI47_09155	0.56	+0.4
1,929,970	+		IAI47_09155	0.56	+0.7
1,929,970	+		IAI47_09155	0.56	-0.3
1,929,971	-		IAI47_09155	0.56	-0.3
1,929,971	-		IAI47_09155	0.56	-0.2
1,929,971	-		IAI47_09155	0.56	+0.4
1,929,971	-		IAI47_09155	0.56	+0.3
1,929,971	-		IAI47_09155	0.56	+1.7
1,929,971	-		IAI47_09155	0.56	+0.2
1,929,971	-		IAI47_09155	0.56	+0.3
1,929,971	-		IAI47_09155	0.56	+0.0
1,929,971	-		IAI47_09155	0.56	+1.7
1,929,971	-		IAI47_09155	0.56	-0.3
1,929,971	-		IAI47_09155	0.56	-1.2
1,929,981	-		IAI47_09155	0.57	-1.0
1,929,981	-		IAI47_09155	0.57	+1.5
1,929,981	-		IAI47_09155	0.57	+0.4
1,929,984	+		IAI47_09155	0.58	+0.3
1,929,985	-		IAI47_09155	0.58	-0.3
1,929,991	+		IAI47_09155	0.59	-0.5
1,929,992	-		IAI47_09155	0.59	+0.7
1,930,003	+		IAI47_09155	0.61	-0.3
1,930,003	+		IAI47_09155	0.61	-0.3
1,930,003	+		IAI47_09155	0.61	+2.3
1,930,004	-		IAI47_09155	0.61	+0.3
1,930,004	-		IAI47_09155	0.61	-0.4
1,930,004	-		IAI47_09155	0.61	+2.1
1,930,004	-		IAI47_09155	0.61	-0.8
1,930,004	-		IAI47_09155	0.61	-1.4
1,930,004	-		IAI47_09155	0.61	-2.1
1,930,141	+		IAI47_09155	0.83	+0.2
1,930,141	+		IAI47_09155	0.83	+0.4
1,930,141	+		IAI47_09155	0.83	+3.7
1,930,141	+		IAI47_09155	0.83	+1.6
1,930,141	+		IAI47_09155	0.83	-0.3
1,930,142	-		IAI47_09155	0.83	+0.1
1,930,149	+		IAI47_09155	0.84	+0.4
1,930,149	+		IAI47_09155	0.84	-0.5
1,930,150	-		IAI47_09155	0.84	+0.2
1,930,200	+				-0.6
1,930,200	+				+0.0
1,930,200	+				+0.4
1,930,200	+				-0.6
1,930,293	+				+1.6
1,930,294	-				+1.6
1,930,294	-				+1.1
1,930,294	-				-0.7
1,930,302	-				+1.0
1,930,302	-				-1.9
1,930,302	-				+0.9
1,930,360	+		IAI47_09160	0.19	+0.6
1,930,361	-		IAI47_09160	0.19	-0.5
1,930,361	-		IAI47_09160	0.19	+0.0
1,930,371	+		IAI47_09160	0.23	+0.0
1,930,413	+		IAI47_09160	0.36	+0.7
1,930,413	+		IAI47_09160	0.36	+0.3
1,930,413	+		IAI47_09160	0.36	+1.7
1,930,414	-		IAI47_09160	0.36	-1.6
1,930,414	-		IAI47_09160	0.36	+0.8
1,930,419	+		IAI47_09160	0.38	+0.8
1,930,420	-		IAI47_09160	0.38	-0.6
1,930,429	+		IAI47_09160	0.41	+3.1
1,930,429	+		IAI47_09160	0.41	+0.0
1,930,429	+		IAI47_09160	0.41	+1.3
1,930,429	+		IAI47_09160	0.41	-0.4
1,930,429	+		IAI47_09160	0.41	-0.7
1,930,430	-		IAI47_09160	0.41	-1.3
1,930,479	+		IAI47_09160	0.57	+0.5
1,930,479	+		IAI47_09160	0.57	-1.7
1,930,496	-		IAI47_09160	0.62	-0.5
1,930,509	+		IAI47_09160	0.66	+1.7
1,930,509	+		IAI47_09160	0.66	-2.5
1,930,510	-		IAI47_09160	0.67	+1.0
1,930,510	-		IAI47_09160	0.67	+0.4
1,930,510	-		IAI47_09160	0.67	-0.3
1,930,510	-		IAI47_09160	0.67	+0.6
1,930,511	+		IAI47_09160	0.67	+1.4
1,930,511	+		IAI47_09160	0.67	-0.4
1,930,511	+		IAI47_09160	0.67	-0.4
1,930,511	+		IAI47_09160	0.67	-0.6
1,930,511	+		IAI47_09160	0.67	+2.5
1,930,511	+		IAI47_09160	0.67	+0.6
1,930,512	-		IAI47_09160	0.67	+0.5
1,930,512	-		IAI47_09160	0.67	+0.0
1,930,512	-		IAI47_09160	0.67	-1.7
1,930,512	-		IAI47_09160	0.67	+1.7
1,930,512	-		IAI47_09160	0.67	+0.3
1,930,512	-		IAI47_09160	0.67	-0.3
1,930,512	-		IAI47_09160	0.67	-0.3
1,930,512	-		IAI47_09160	0.67	-1.5
1,930,512	-		IAI47_09160	0.67	-0.3
1,930,582	+		IAI47_09160	0.90	+0.9
1,930,701	+				-0.3
1,930,702	-				-0.7
1,930,737	-				+1.7
1,930,746	+				+1.3
1,930,746	+				-0.8
1,930,765	+				+0.1
1,930,960	+		IAI47_09165	0.24	-1.8
1,931,044	+		IAI47_09165	0.35	-3.0
1,931,044	+		IAI47_09165	0.35	-2.4
1,931,044	+		IAI47_09165	0.35	-2.3
1,931,044	+		IAI47_09165	0.35	-3.3
1,931,045	-		IAI47_09165	0.35	-2.6
1,931,045	-		IAI47_09165	0.35	-2.3
1,931,045	-		IAI47_09165	0.35	-2.3
1,931,045	-		IAI47_09165	0.35	-2.4
1,931,045	-		IAI47_09165	0.35	-2.6
1,931,045	-		IAI47_09165	0.35	-1.8
1,931,045	-		IAI47_09165	0.35	-3.5
1,931,045	-		IAI47_09165	0.35	-2.3
1,931,045	-		IAI47_09165	0.35	-3.7
1,931,048	+		IAI47_09165	0.35	-2.6
1,931,048	+		IAI47_09165	0.35	-3.6
1,931,048	+		IAI47_09165	0.35	-2.4
1,931,048	+		IAI47_09165	0.35	-1.8
1,931,048	+		IAI47_09165	0.35	-4.2
1,931,048	+		IAI47_09165	0.35	-2.7
1,931,048	+		IAI47_09165	0.35	-1.3
1,931,049	-		IAI47_09165	0.35	-2.7
1,931,049	-		IAI47_09165	0.35	-1.8
1,931,049	-		IAI47_09165	0.35	-1.8
1,931,049	-		IAI47_09165	0.35	-2.1
1,931,049	-		IAI47_09165	0.35	-2.3
1,931,049	-		IAI47_09165	0.35	-3.3
1,931,049	-		IAI47_09165	0.35	-2.7
1,931,050	+		IAI47_09165	0.36	-2.6
1,931,050	+		IAI47_09165	0.36	-2.6
1,931,111	+		IAI47_09165	0.43	-3.3
1,931,111	+		IAI47_09165	0.43	-1.6
1,931,111	+		IAI47_09165	0.43	-2.3
1,931,111	+		IAI47_09165	0.43	-2.1
1,931,112	-		IAI47_09165	0.43	-2.7
1,931,112	-		IAI47_09165	0.43	-4.3
1,931,112	-		IAI47_09165	0.43	-2.3
1,931,112	-		IAI47_09165	0.43	-3.3
1,931,112	-		IAI47_09165	0.43	-3.2
1,931,117	+		IAI47_09165	0.44	-2.7
1,931,118	-		IAI47_09165	0.44	-1.8
1,931,118	-		IAI47_09165	0.44	-1.3
1,931,224	+		IAI47_09165	0.57	-3.8
1,931,224	+		IAI47_09165	0.57	-3.2
1,931,263	+		IAI47_09165	0.62	-1.6
1,931,263	+		IAI47_09165	0.62	-1.6
1,931,263	+		IAI47_09165	0.62	-0.8
1,931,263	+		IAI47_09165	0.62	-3.1
1,931,264	-		IAI47_09165	0.62	-2.6
1,931,264	-		IAI47_09165	0.62	-4.1
1,931,264	-		IAI47_09165	0.62	-1.3
1,931,264	-		IAI47_09165	0.62	-3.4
1,931,264	-		IAI47_09165	0.62	-3.3
1,931,264	-		IAI47_09165	0.62	-0.3
1,931,272	-		IAI47_09165	0.63	-2.4
1,931,272	-		IAI47_09165	0.63	-4.1
1,931,306	+		IAI47_09165	0.67	-4.0
1,931,544	-				-2.8
1,931,557	+				-0.3
1,931,557	+				-3.5
1,931,558	-				-4.2
1,931,558	-				-3.8
1,931,611	+				-1.8