Strain Fitness in Pantoea sp. MT58 around IAI47_08165

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
1,721,344	+				+0.7
1,721,385	+				-0.2
1,721,386	-				+0.6
1,721,386	-				-0.1
1,721,400	-				-0.7
1,721,400	-				+0.3
1,721,400	-				+0.1
1,721,452	+				-0.3
1,721,452	+				-3.6
1,721,452	+				-2.1
1,721,452	+				-2.0
1,721,452	+				+0.2
1,721,452	+				-0.9
1,721,453	-				-0.1
1,721,453	-				+0.4
1,721,453	-				+0.6
1,721,453	-				-2.1
1,721,474	-				-0.6
1,721,483	+				+0.8
1,721,503	+				+0.1
1,721,503	+				-1.4
1,721,503	+				+1.9
1,721,504	-				-0.5
1,721,548	+				+0.3
1,721,549	-				-0.8
1,721,549	-				-0.8
1,721,640	-		IAI47_08160	0.21	-1.7
1,721,648	+		IAI47_08160	0.22	+0.9
1,721,649	-		IAI47_08160	0.22	-0.3
1,721,665	+		IAI47_08160	0.24	+1.2
1,721,682	+		IAI47_08160	0.26	+3.5
1,721,682	+		IAI47_08160	0.26	+0.4
1,721,683	-		IAI47_08160	0.27	-0.8
1,721,683	-		IAI47_08160	0.27	+0.7
1,721,691	+		IAI47_08160	0.28	+0.1
1,721,691	+		IAI47_08160	0.28	+1.4
1,721,692	-		IAI47_08160	0.28	-0.9
1,721,699	-		IAI47_08160	0.29	+1.1
1,721,699	-		IAI47_08160	0.29	-0.1
1,721,712	+		IAI47_08160	0.31	+0.9
1,721,713	-		IAI47_08160	0.31	+0.7
1,721,713	-		IAI47_08160	0.31	+0.9
1,721,713	-		IAI47_08160	0.31	-0.3
1,721,775	+		IAI47_08160	0.39	+1.3
1,721,881	+		IAI47_08160	0.54	-0.1
1,722,088	+		IAI47_08160	0.83	+0.9
1,722,088	+		IAI47_08160	0.83	+0.3
1,722,088	+		IAI47_08160	0.83	+1.6
1,722,088	+		IAI47_08160	0.83	+0.3
1,722,088	+		IAI47_08160	0.83	+0.4
1,722,088	+		IAI47_08160	0.83	+3.6
1,722,088	+		IAI47_08160	0.83	+0.3
1,722,088	+		IAI47_08160	0.83	+0.7
1,722,089	-		IAI47_08160	0.83	-0.1
1,722,089	-		IAI47_08160	0.83	+2.3
1,722,089	-		IAI47_08160	0.83	+1.1
1,722,089	-		IAI47_08160	0.83	+0.0
1,722,091	+		IAI47_08160	0.83	+0.7
1,722,091	+		IAI47_08160	0.83	+2.0
1,722,091	+		IAI47_08160	0.83	-0.4
1,722,091	+		IAI47_08160	0.83	+0.4
1,722,092	-		IAI47_08160	0.83	+1.7
1,722,092	-		IAI47_08160	0.83	+0.7
1,722,092	-		IAI47_08160	0.83	-0.3
1,722,092	-		IAI47_08160	0.83	+1.7
1,722,212	-				-0.1
1,722,217	+				-1.0
1,722,217	+				-0.7
1,722,217	+				-1.0
1,722,218	-				+2.1
1,722,218	-				-2.0
1,722,218	-				-2.3
1,722,243	+				-0.9
1,722,262	+				-1.5
1,722,292	+				-1.0
1,722,292	+				-2.1
1,722,293	-				-2.6
1,722,300	+				+0.7
1,722,305	+				+2.2
1,722,306	-				-3.7
1,722,306	-				-3.6
1,722,306	-				+0.7
1,722,312	+				-2.5
1,722,312	+				-0.9
1,722,313	+				-2.5
1,722,313	-				-2.3
1,722,313	-				-1.2
1,722,313	-				-3.0
1,722,313	-				-0.9
1,722,314	+				-3.3
1,722,314	+				-1.6
1,722,315	-		IAI47_08165	0.10	-2.0
1,722,315	-		IAI47_08165	0.10	-2.6
1,722,315	-		IAI47_08165	0.10	-1.8
1,722,315	-		IAI47_08165	0.10	-1.5
1,722,315	-		IAI47_08165	0.10	-2.5
1,722,352	+		IAI47_08165	0.17	-1.9
1,722,352	+		IAI47_08165	0.17	-2.3
1,722,352	+		IAI47_08165	0.17	-3.1
1,722,353	-		IAI47_08165	0.18	-1.3
1,722,353	-		IAI47_08165	0.18	-1.9
1,722,353	-		IAI47_08165	0.18	-2.1
1,722,355	+		IAI47_08165	0.18	-2.3
1,722,355	+		IAI47_08165	0.18	+0.7
1,722,356	-		IAI47_08165	0.18	-0.7
1,722,356	-		IAI47_08165	0.18	-1.3
1,722,356	-				-0.3
1,722,395	+		IAI47_08165	0.26	-1.6
1,722,395	+		IAI47_08165	0.26	-1.9
1,722,396	-		IAI47_08165	0.26	+0.1
1,722,396	-		IAI47_08165	0.26	-2.9
1,722,485	+		IAI47_08165	0.44	-2.3
1,722,513	-		IAI47_08165	0.49	+0.7
1,722,513	-		IAI47_08165	0.49	-2.1
1,722,513	-		IAI47_08165	0.49	-3.9
1,722,516	+		IAI47_08165	0.50	-2.6
1,722,516	+		IAI47_08165	0.50	-3.0
1,722,516	+		IAI47_08165	0.50	-1.5
1,722,516	+		IAI47_08165	0.50	-0.6
1,722,516	+		IAI47_08165	0.50	-0.6
1,722,543	+		IAI47_08165	0.55	-3.1
1,722,543	+		IAI47_08165	0.55	+0.4
1,722,544	-		IAI47_08165	0.56	-2.5
1,722,544	-		IAI47_08165	0.56	-2.5
1,722,544	-		IAI47_08165	0.56	-3.0
1,722,588	+		IAI47_08165	0.64	-0.0
1,722,589	-		IAI47_08165	0.64	+0.7
1,722,589	-		IAI47_08165	0.64	-2.5
1,722,589	-		IAI47_08165	0.64	-1.7
1,722,589	-		IAI47_08165	0.64	-1.7
1,722,589	-		IAI47_08165	0.64	-1.9
1,722,653	+		IAI47_08165	0.77	-1.9
1,722,662	+		IAI47_08165	0.79	-0.9
1,722,662	+		IAI47_08165	0.79	-2.3
1,722,663	-		IAI47_08165	0.79	-1.1
1,722,663	-		IAI47_08165	0.79	-0.6
1,722,705	-		IAI47_08165	0.88	-2.0
1,722,705	-		IAI47_08165	0.88	-2.3
1,722,707	+		IAI47_08165	0.88	-3.4
1,722,707	+		IAI47_08165	0.88	-2.6
1,722,708	-		IAI47_08165	0.88	-0.6
1,722,714	+		IAI47_08165	0.89	-2.9
1,722,714	+		IAI47_08165	0.89	-1.6
1,722,715	-		IAI47_08165	0.89	-1.6
1,722,715	-		IAI47_08165	0.89	+0.1
1,722,735	+				-3.0
1,722,735	+				-1.1
1,722,735	+				+0.1
1,722,736	-				-1.7
1,722,736	-				-2.9
1,722,736	-				-1.5
1,722,749	-				-2.7
1,722,749	-				-1.9
1,722,749	-				-2.2
1,722,749	-				-2.2
1,722,749	-				-2.1
1,722,765	+				+1.4
1,722,765	+				+0.5
1,722,766	-				-1.0
1,722,766	-				-1.2
1,722,951	+				-0.3
1,722,952	-				-1.1
1,722,952	-				-0.3
1,722,957	+				-0.9
1,722,958	-				+1.1
1,723,001	+				+1.8
1,723,001	+				+3.0
1,723,001	+				-0.5
1,723,002	-				-0.1
1,723,047	-				-0.6
1,723,072	+				-0.7
1,723,193	+		IAI47_08170	0.21	+0.5
1,723,193	+		IAI47_08170	0.21	+0.3
1,723,193	+		IAI47_08170	0.21	+0.5
1,723,296	+		IAI47_08170	0.32	-0.4
1,723,313	-		IAI47_08170	0.33	+0.2
1,723,338	-		IAI47_08170	0.36	-0.2
1,723,444	+		IAI47_08170	0.47	-0.1
1,723,444	+		IAI47_08170	0.47	+0.1
1,723,444	+		IAI47_08170	0.47	-0.5
1,723,444	+		IAI47_08170	0.47	+0.0
1,723,445	-		IAI47_08170	0.47	-0.9
1,723,445	-		IAI47_08170	0.47	+0.6
1,723,445	-		IAI47_08170	0.47	-0.1
1,723,445	-		IAI47_08170	0.47	-0.5
1,723,445	-		IAI47_08170	0.47	+0.6
1,723,445	-		IAI47_08170	0.47	-0.7
1,723,484	+		IAI47_08170	0.51	-0.9
1,723,485	-		IAI47_08170	0.51	+1.9
1,723,485	-		IAI47_08170	0.51	+0.1
1,723,485	-		IAI47_08170	0.51	-1.1
1,723,485	-		IAI47_08170	0.51	-0.4
1,723,485	-		IAI47_08170	0.51	-0.6
1,723,489	+		IAI47_08170	0.51	+0.2
1,723,489	+		IAI47_08170	0.51	+1.5
1,723,489	+		IAI47_08170	0.51	+1.2
1,723,489	+		IAI47_08170	0.51	-0.2
1,723,489	+		IAI47_08170	0.51	-1.7
1,723,489	+		IAI47_08170	0.51	-0.4
1,723,489	+		IAI47_08170	0.51	-1.9
1,723,490	-		IAI47_08170	0.51	+2.0
1,723,490	-		IAI47_08170	0.51	-0.4
1,723,490	-		IAI47_08170	0.51	+2.3
1,723,490	-		IAI47_08170	0.51	+0.6
1,723,490	-		IAI47_08170	0.51	+1.5
1,723,490	-		IAI47_08170	0.51	-0.3
1,723,490	-		IAI47_08170	0.51	-0.2
1,723,490	-		IAI47_08170	0.51	-0.3
1,723,595	+		IAI47_08170	0.62	-0.6
1,723,596	-		IAI47_08170	0.62	+1.0
1,723,596	-		IAI47_08170	0.62	-0.5
1,723,715	+		IAI47_08170	0.74	-0.1
1,723,715	+		IAI47_08170	0.74	+0.4
1,723,716	-		IAI47_08170	0.74	+1.7
1,723,716	-		IAI47_08170	0.74	-0.3
1,723,716	-		IAI47_08170	0.74	+0.3
1,723,723	-		IAI47_08170	0.75	+0.0
1,723,723	-		IAI47_08170	0.75	+0.7
1,723,731	+		IAI47_08170	0.76	-0.0
1,723,731	+		IAI47_08170	0.76	+0.2
1,723,731	+		IAI47_08170	0.76	-0.9
1,723,731	+		IAI47_08170	0.76	-2.7
1,723,731	+		IAI47_08170	0.76	-0.3
1,723,732	-		IAI47_08170	0.76	+0.2
1,723,732	-		IAI47_08170	0.76	-0.3
1,723,732	-		IAI47_08170	0.76	+0.3
1,723,732	-		IAI47_08170	0.76	+0.7
1,723,732	-		IAI47_08170	0.76	-0.6
1,723,732	-		IAI47_08170	0.76	-0.6
1,723,732	-		IAI47_08170	0.76	-1.8