Strain Fitness in Pantoea sp. MT58 around IAI47_06335

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
1,287,256	-				+3.6
1,287,289	+				-0.9
1,287,290	-				+3.4
1,287,294	+				-0.5
1,287,294	+				-0.5
1,287,295	-				+1.1
1,287,295	-				-0.1
1,287,295	-				-0.2
1,287,309	+				-0.4
1,287,310	-				-0.2
1,287,314	-				-0.6
1,287,335	+				-0.4
1,287,336	-				+1.4
1,287,351	-				-0.7
1,287,351	-				-0.6
1,287,376	-				-0.0
1,287,381	-				+1.1
1,287,523	-				+0.2
1,287,523	-				-0.1
1,287,523	-				+2.1
1,287,523	-				+0.3
1,287,523	-				+1.4
1,287,538	+				-0.9
1,287,554	+				-1.2
1,287,698	+		IAI47_06330	0.13	+0.5
1,287,698	+		IAI47_06330	0.13	+0.4
1,287,698	+		IAI47_06330	0.13	+0.6
1,287,698	+		IAI47_06330	0.13	+0.8
1,287,698	+		IAI47_06330	0.13	+0.5
1,287,698	+		IAI47_06330	0.13	+0.1
1,287,698	+		IAI47_06330	0.13	+0.8
1,287,698	+		IAI47_06330	0.13	-1.8
1,287,698	+		IAI47_06330	0.13	-0.1
1,287,698	+		IAI47_06330	0.13	-0.7
1,287,698	+		IAI47_06330	0.13	-0.6
1,287,698	+		IAI47_06330	0.13	-0.5
1,287,698	+		IAI47_06330	0.13	-0.1
1,287,698	+		IAI47_06330	0.13	+0.2
1,287,699	-		IAI47_06330	0.13	-0.2
1,287,699	-		IAI47_06330	0.13	+0.4
1,287,699	-		IAI47_06330	0.13	+1.2
1,287,699	-		IAI47_06330	0.13	+0.8
1,287,699	-		IAI47_06330	0.13	-0.6
1,287,699	-		IAI47_06330	0.13	-0.8
1,287,699	-		IAI47_06330	0.13	-1.3
1,287,699	-		IAI47_06330	0.13	-0.0
1,287,699	-		IAI47_06330	0.13	-0.1
1,287,699	-		IAI47_06330	0.13	+0.8
1,287,699	-		IAI47_06330	0.13	-0.2
1,287,699	-		IAI47_06330	0.13	+0.4
1,287,699	-		IAI47_06330	0.13	+0.8
1,287,699	-		IAI47_06330	0.13	+0.2
1,287,699	-		IAI47_06330	0.13	-0.3
1,287,699	-		IAI47_06330	0.13	+0.9
1,287,700	+		IAI47_06330	0.13	+0.9
1,287,700	+		IAI47_06330	0.13	+0.2
1,287,700	+		IAI47_06330	0.13	+0.5
1,287,701	-		IAI47_06330	0.13	-0.6
1,287,701	-		IAI47_06330	0.13	-0.2
1,287,701	-		IAI47_06330	0.13	-2.6
1,287,701	-		IAI47_06330	0.13	-0.2
1,287,701	-		IAI47_06330	0.13	+0.5
1,287,701	-		IAI47_06330	0.13	-1.0
1,287,701	-		IAI47_06330	0.13	+0.3
1,287,701	-		IAI47_06330	0.13	-0.2
1,287,701	-		IAI47_06330	0.13	+0.4
1,287,701	-		IAI47_06330	0.13	+0.6
1,287,701	-		IAI47_06330	0.13	-0.1
1,287,701	-		IAI47_06330	0.13	+1.8
1,287,722	-		IAI47_06330	0.18	+0.8
1,287,722	-		IAI47_06330	0.18	-0.2
1,287,787	+		IAI47_06330	0.32	+0.6
1,287,787	+		IAI47_06330	0.32	-1.4
1,287,787	+		IAI47_06330	0.32	-0.1
1,287,787	+		IAI47_06330	0.32	-0.3
1,287,787	+		IAI47_06330	0.32	-0.1
1,287,809	-		IAI47_06330	0.37	-1.7
1,287,946	+		IAI47_06330	0.67	+0.1
1,287,946	+		IAI47_06330	0.67	-0.4
1,287,947	-		IAI47_06330	0.68	-0.0
1,287,947	-		IAI47_06330	0.68	+0.2
1,287,947	-		IAI47_06330	0.68	-0.1
1,287,947	-		IAI47_06330	0.68	-0.3
1,288,022	+		IAI47_06330	0.84	+0.3
1,288,022	+		IAI47_06330	0.84	-0.6
1,288,057	+				-0.9
1,288,058	-				+1.6
1,288,058	-				-0.5
1,288,092	-				+0.6
1,288,092	-				+0.8
1,288,117	+				+0.6
1,288,117	+				-1.7
1,288,118	-				+0.8
1,288,118	-				-0.1
1,288,121	+				-1.2
1,288,122	-				-0.4
1,288,128	-				+2.4
1,288,281	+				-1.2
1,288,282	-				-1.1
1,288,283	+				+0.5
1,288,283	+				-0.4
1,288,284	-				+0.9
1,288,284	-				+0.9
1,288,284	-				-1.2
1,288,284	-				+1.0
1,288,357	-		IAI47_06335	0.24	+0.4
1,288,430	+		IAI47_06335	0.39	-1.7
1,288,431	-		IAI47_06335	0.39	-0.6
1,288,433	+		IAI47_06335	0.39	-0.6
1,288,434	-		IAI47_06335	0.39	-0.2
1,288,434	-		IAI47_06335	0.39	+0.1
1,288,481	+		IAI47_06335	0.49	+0.8
1,288,481	+		IAI47_06335	0.49	-0.0
1,288,481	+		IAI47_06335	0.49	-0.6
1,288,481	+		IAI47_06335	0.49	-0.2
1,288,482	-		IAI47_06335	0.49	-0.7
1,288,482	-		IAI47_06335	0.49	-0.1
1,288,482	-		IAI47_06335	0.49	+0.2
1,288,482	-		IAI47_06335	0.49	-0.4
1,288,554	+		IAI47_06335	0.64	-1.0
1,288,554	+		IAI47_06335	0.64	+0.3
1,288,555	-		IAI47_06335	0.64	-0.5
1,288,565	+		IAI47_06335	0.66	-1.0
1,288,565	+		IAI47_06335	0.66	+0.8
1,288,566	-		IAI47_06335	0.66	+0.2
1,288,574	+		IAI47_06335	0.68	+0.2
1,288,574	+		IAI47_06335	0.68	+3.4
1,288,574	+		IAI47_06335	0.68	-0.2
1,288,574	+		IAI47_06335	0.68	-1.2
1,288,574	+		IAI47_06335	0.68	-0.6
1,288,574	+		IAI47_06335	0.68	+0.6
1,288,575	-		IAI47_06335	0.68	+1.5
1,288,575	-		IAI47_06335	0.68	+1.2
1,288,587	+		IAI47_06335	0.70	-0.2
1,288,587	+		IAI47_06335	0.70	+0.2
1,288,587	+		IAI47_06335	0.70	-2.0
1,288,589	+		IAI47_06335	0.71	+0.8
1,288,589	+		IAI47_06335	0.71	+0.3
1,288,589	+		IAI47_06335	0.71	+0.1
1,288,589	+		IAI47_06335	0.71	-0.0
1,288,607	+		IAI47_06335	0.74	-0.5
1,288,647	+		IAI47_06335	0.82	+0.2
1,288,647	+		IAI47_06335	0.82	+1.1
1,288,647	+		IAI47_06335	0.82	-1.0
1,288,648	-		IAI47_06335	0.83	-0.1
1,288,660	+		IAI47_06335	0.85	+1.2
1,288,660	+		IAI47_06335	0.85	-1.2
1,288,660	+		IAI47_06335	0.85	-0.2
1,288,661	-		IAI47_06335	0.85	-2.2
1,288,661	-		IAI47_06335	0.85	-0.2
1,288,661	-		IAI47_06335	0.85	+0.2
1,288,661	-		IAI47_06335	0.85	-0.7
1,288,690	-				-1.1
1,288,690	-				+1.0
1,288,696	+				+0.3
1,288,696	+				-0.6
1,288,696	+				-0.5
1,288,696	+				-1.3
1,288,696	+				-0.2
1,288,697	-				+1.2
1,288,697	-				-0.6
1,288,697	-				-1.8
1,288,697	-				-0.5
1,288,707	+				-0.8
1,288,753	+				-0.5
1,288,753	+				+2.8
1,288,754	-				-0.8
1,288,754	-				-1.2
1,288,766	+				-0.8
1,288,766	+				+0.4
1,288,775	+				+0.4
1,288,846	-		IAI47_06340	0.15	-0.6
1,288,872	+		IAI47_06340	0.19	+0.2
1,288,873	-		IAI47_06340	0.19	+0.1
1,288,935	+		IAI47_06340	0.28	-0.3
1,288,935	+		IAI47_06340	0.28	-0.1
1,288,935	+		IAI47_06340	0.28	+0.4
1,288,936	-		IAI47_06340	0.29	+0.5
1,288,937	+		IAI47_06340	0.29	-1.1
1,288,937	+		IAI47_06340	0.29	+0.0
1,288,937	+		IAI47_06340	0.29	-0.0
1,288,937	+		IAI47_06340	0.29	+0.2
1,288,938	-		IAI47_06340	0.29	+2.0
1,288,938	-		IAI47_06340	0.29	-0.7
1,288,938	-		IAI47_06340	0.29	+1.2
1,288,938	-		IAI47_06340	0.29	+0.2
1,288,950	+		IAI47_06340	0.31	+1.8
1,289,043	+		IAI47_06340	0.45	+0.8
1,289,043	+		IAI47_06340	0.45	+0.1
1,289,044	-		IAI47_06340	0.45	+2.3
1,289,044	-		IAI47_06340	0.45	-0.2
1,289,044	-		IAI47_06340	0.45	-1.1
1,289,044	-		IAI47_06340	0.45	+2.7
1,289,044	-		IAI47_06340	0.45	-0.2
1,289,111	+		IAI47_06340	0.55	+1.6
1,289,133	+		IAI47_06340	0.58	+0.4
1,289,158	-		IAI47_06340	0.62	-0.2
1,289,158	-		IAI47_06340	0.62	-0.0
1,289,176	+		IAI47_06340	0.65	-1.0
1,289,177	-		IAI47_06340	0.65	+0.9
1,289,222	+		IAI47_06340	0.72	-0.0
1,289,223	-		IAI47_06340	0.72	-0.5
1,289,286	+		IAI47_06340	0.82	+0.2
1,289,286	+		IAI47_06340	0.82	-1.0
1,289,286	+		IAI47_06340	0.82	+0.4
1,289,287	-		IAI47_06340	0.82	+0.5
1,289,287	-		IAI47_06340	0.82	-2.2
1,289,287	-		IAI47_06340	0.82	-1.2
1,289,287	-		IAI47_06340	0.82	-0.2
1,289,287	-		IAI47_06340	0.82	-0.8
1,289,289	+		IAI47_06340	0.82	+0.4
1,289,289	+		IAI47_06340	0.82	-0.0
1,289,289	+		IAI47_06340	0.82	-0.4
1,289,289	+		IAI47_06340	0.82	+1.4
1,289,290	-		IAI47_06340	0.82	-0.5
1,289,290	-		IAI47_06340	0.82	+1.1
1,289,290	-		IAI47_06340	0.82	+0.8
1,289,290	-		IAI47_06340	0.82	-1.2
1,289,332	-		IAI47_06340	0.89	-0.3
1,289,358	-				+1.1
1,289,358	-				-0.4
1,289,385	+				-0.4
1,289,385	+				+1.3
1,289,385	+				+0.4
1,289,391	+				+0.1
1,289,391	+				+0.4
1,289,391	+				-0.6
1,289,391	+				+0.8
1,289,404	+				-0.5
1,289,404	+				-1.4
1,289,404	+				+0.1
1,289,405	-				+0.1
1,289,437	+				-1.0
1,289,438	-				+0.2
1,289,438	-				-0.2
1,289,438	-				+0.1
1,289,447	+				-0.2
1,289,447	+				+1.2
1,289,448	-				-0.2
1,289,448	-				-0.7
1,289,448	-				-1.2
1,289,448	-				-0.6
1,289,506	+		IAI47_06345	0.12	-0.6
1,289,507	-		IAI47_06345	0.12	-0.6
1,289,507	-		IAI47_06345	0.12	-0.2
1,289,576	+		IAI47_06345	0.23	-0.4
1,289,606	+		IAI47_06345	0.28	-0.6
1,289,606	+		IAI47_06345	0.28	+0.4
1,289,606	+		IAI47_06345	0.28	+2.1
1,289,606	+		IAI47_06345	0.28	-0.4
1,289,606	+		IAI47_06345	0.28	+0.1
1,289,606	+		IAI47_06345	0.28	+0.6
1,289,606	+		IAI47_06345	0.28	-0.5
1,289,606	+		IAI47_06345	0.28	-0.7
1,289,606	+		IAI47_06345	0.28	-0.4
1,289,606	+		IAI47_06345	0.28	+0.8
1,289,607	-				-0.6
1,289,607	-		IAI47_06345	0.28	-1.6
1,289,607	-		IAI47_06345	0.28	+1.2
1,289,607	-		IAI47_06345	0.28	+0.8
1,289,607	-		IAI47_06345	0.28	-0.2
1,289,607	-		IAI47_06345	0.28	-0.4
1,289,611	+		IAI47_06345	0.29	+0.2
1,289,611	+		IAI47_06345	0.29	-0.4
1,289,611	+		IAI47_06345	0.29	+0.8
1,289,611	+		IAI47_06345	0.29	+0.2
1,289,612	-		IAI47_06345	0.29	-0.7
1,289,612	-		IAI47_06345	0.29	+0.9
1,289,612	-		IAI47_06345	0.29	-0.2
1,289,612	-		IAI47_06345	0.29	+2.5
1,289,612	-		IAI47_06345	0.29	-1.2
1,289,660	+		IAI47_06345	0.37	-1.2
1,289,660	+		IAI47_06345	0.37	+1.4
1,289,660	+		IAI47_06345	0.37	+0.1
1,289,661	-		IAI47_06345	0.38	+0.2
1,289,674	+		IAI47_06345	0.40	+2.4
1,289,689	+		IAI47_06345	0.42	+0.3