Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04455 and IAI47_04460 are separated by 74 nucleotides IAI47_04460 and IAI47_04465 are separated by 276 nucleotides IAI47_04465 and IAI47_04470 are separated by 348 nucleotides
IAI47_04455: IAI47_04455 - 23S ribosomal RNA, at 933,950 to 936,884
_04455
IAI47_04460: IAI47_04460 - 5S ribosomal RNA, at 936,959 to 937,074
_04460
IAI47_04465: IAI47_04465 - MFS transporter, at 937,351 to 938,640
_04465
IAI47_04470: IAI47_04470 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 938,989 to 940,344
_04470
Position (kb) 937
938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 936.916 kb on + strand at 936.916 kb on + strand at 936.918 kb on + strand at 936.918 kb on + strand at 936.918 kb on + strand at 936.918 kb on + strand at 936.918 kb on + strand at 936.932 kb on + strand at 937.119 kb on + strand at 937.137 kb on + strand at 937.138 kb on - strand at 937.237 kb on - strand at 937.256 kb on - strand at 937.256 kb on - strand at 937.279 kb on + strand at 937.280 kb on - strand at 937.295 kb on - strand at 937.295 kb on - strand at 937.295 kb on - strand at 937.295 kb on - strand at 937.303 kb on + strand at 937.303 kb on + strand at 937.304 kb on - strand at 937.316 kb on - strand at 937.345 kb on + strand at 937.345 kb on + strand at 937.345 kb on + strand at 937.346 kb on - strand at 937.346 kb on - strand at 937.346 kb on - strand at 937.365 kb on + strand at 937.366 kb on - strand at 937.366 kb on - strand at 937.368 kb on + strand at 937.368 kb on + strand at 937.369 kb on - strand at 937.369 kb on - strand at 937.369 kb on - strand at 937.369 kb on - strand at 937.369 kb on - strand at 937.369 kb on - strand at 937.387 kb on - strand at 937.387 kb on - strand at 937.398 kb on + strand at 937.398 kb on + strand at 937.398 kb on + strand at 937.399 kb on - strand at 937.399 kb on - strand at 937.399 kb on - strand at 937.399 kb on - strand at 937.399 kb on - strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.459 kb on + strand at 937.459 kb on + strand at 937.459 kb on + strand at 937.459 kb on + strand at 937.459 kb on + strand at 937.460 kb on - strand at 937.460 kb on - strand at 937.460 kb on - strand at 937.460 kb on - strand at 937.460 kb on - strand at 937.477 kb on + strand at 937.477 kb on + strand at 937.477 kb on + strand at 937.478 kb on - strand at 937.523 kb on + strand, within IAI47_04465 at 937.523 kb on + strand, within IAI47_04465 at 937.524 kb on - strand, within IAI47_04465 at 937.559 kb on + strand, within IAI47_04465 at 937.583 kb on + strand, within IAI47_04465 at 937.584 kb on - strand, within IAI47_04465 at 937.591 kb on + strand, within IAI47_04465 at 937.591 kb on + strand, within IAI47_04465 at 937.591 kb on + strand, within IAI47_04465 at 937.594 kb on - strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.685 kb on - strand, within IAI47_04465 at 937.731 kb on + strand, within IAI47_04465 at 937.731 kb on + strand, within IAI47_04465 at 937.745 kb on + strand, within IAI47_04465 at 937.762 kb on + strand, within IAI47_04465 at 937.762 kb on + strand, within IAI47_04465 at 937.763 kb on - strand, within IAI47_04465 at 937.763 kb on - strand, within IAI47_04465 at 937.763 kb on - strand, within IAI47_04465 at 937.763 kb on - strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.820 kb on - strand, within IAI47_04465 at 937.820 kb on - strand, within IAI47_04465 at 937.820 kb on - strand, within IAI47_04465 at 937.820 kb on - strand, within IAI47_04465 at 937.820 kb on - strand, within IAI47_04465 at 937.820 kb on - strand, within IAI47_04465 at 937.834 kb on + strand, within IAI47_04465 at 937.973 kb on + strand, within IAI47_04465 at 937.973 kb on + strand, within IAI47_04465 at 937.974 kb on - strand, within IAI47_04465 at 938.007 kb on + strand, within IAI47_04465 at 938.007 kb on + strand, within IAI47_04465 at 938.007 kb on + strand, within IAI47_04465 at 938.008 kb on - strand, within IAI47_04465 at 938.008 kb on - strand, within IAI47_04465 at 938.051 kb on + strand, within IAI47_04465 at 938.065 kb on - strand, within IAI47_04465 at 938.119 kb on + strand, within IAI47_04465 at 938.119 kb on + strand, within IAI47_04465 at 938.120 kb on - strand, within IAI47_04465 at 938.120 kb on - strand, within IAI47_04465 at 938.134 kb on + strand, within IAI47_04465 at 938.134 kb on + strand, within IAI47_04465 at 938.134 kb on + strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.146 kb on + strand, within IAI47_04465 at 938.146 kb on + strand, within IAI47_04465 at 938.146 kb on + strand, within IAI47_04465 at 938.147 kb on - strand, within IAI47_04465 at 938.155 kb on - strand, within IAI47_04465 at 938.234 kb on + strand, within IAI47_04465 at 938.234 kb on + strand, within IAI47_04465 at 938.235 kb on - strand, within IAI47_04465 at 938.253 kb on + strand, within IAI47_04465 at 938.303 kb on + strand, within IAI47_04465 at 938.303 kb on + strand, within IAI47_04465 at 938.304 kb on - strand, within IAI47_04465 at 938.304 kb on - strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.312 kb on + strand, within IAI47_04465 at 938.313 kb on - strand, within IAI47_04465 at 938.313 kb on - strand, within IAI47_04465 at 938.313 kb on - strand, within IAI47_04465 at 938.354 kb on + strand, within IAI47_04465 at 938.355 kb on - strand, within IAI47_04465 at 938.355 kb on - strand, within IAI47_04465 at 938.366 kb on + strand, within IAI47_04465 at 938.366 kb on + strand, within IAI47_04465 at 938.367 kb on - strand, within IAI47_04465 at 938.367 kb on - strand, within IAI47_04465 at 938.389 kb on - strand, within IAI47_04465 at 938.389 kb on - strand, within IAI47_04465 at 938.398 kb on + strand, within IAI47_04465 at 938.398 kb on + strand, within IAI47_04465 at 938.398 kb on + strand, within IAI47_04465 at 938.399 kb on - strand, within IAI47_04465 at 938.399 kb on - strand, within IAI47_04465 at 938.421 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.513 kb on - strand at 938.513 kb on - strand at 938.513 kb on - strand at 938.513 kb on - strand at 938.563 kb on + strand at 938.563 kb on + strand at 938.563 kb on + strand at 938.563 kb on + strand at 938.564 kb on - strand at 938.631 kb on + strand at 938.632 kb on - strand at 938.632 kb on - strand at 938.638 kb on + strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.746 kb on + strand at 938.746 kb on + strand at 938.746 kb on + strand at 938.746 kb on + strand at 938.747 kb on - strand at 938.747 kb on - strand at 938.747 kb on - strand at 938.747 kb on - strand at 938.768 kb on + strand at 938.768 kb on + strand at 938.768 kb on + strand at 938.768 kb on + strand at 938.769 kb on - strand at 938.769 kb on - strand at 938.772 kb on + strand at 938.773 kb on - strand at 938.773 kb on - strand at 938.793 kb on - strand at 938.793 kb on - strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.834 kb on - strand at 938.834 kb on - strand at 938.834 kb on - strand at 938.834 kb on - strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.838 kb on - strand at 938.838 kb on - strand at 938.838 kb on - strand at 938.915 kb on + strand at 938.916 kb on - strand at 938.963 kb on - strand at 938.975 kb on + strand at 938.975 kb on + strand at 938.976 kb on - strand at 938.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 936,916 + -0.2 936,916 + -0.6 936,918 + -0.8 936,918 + +1.7 936,918 + -0.9 936,918 + +1.6 936,918 + +0.0 936,932 + +0.0 937,119 + -0.2 937,137 + -0.2 937,138 - +0.4 937,237 - +0.3 937,256 - -0.5 937,256 - -0.0 937,279 + -0.5 937,280 - -2.1 937,295 - -0.3 937,295 - -2.0 937,295 - -0.5 937,295 - +0.6 937,303 + +0.7 937,303 + -0.8 937,304 - -0.9 937,316 - -1.4 937,345 + +1.2 937,345 + -0.4 937,345 + -0.4 937,346 - -0.6 937,346 - +0.1 937,346 - -0.8 937,365 + +0.1 937,366 - +1.1 937,366 - +0.5 937,368 + +0.8 937,368 + -0.2 937,369 - -1.0 937,369 - +0.3 937,369 - -0.5 937,369 - -0.7 937,369 - -2.2 937,369 - +0.2 937,387 - -0.4 937,387 - -1.2 937,398 + -1.3 937,398 + -0.2 937,398 + -0.2 937,399 - +0.4 937,399 - +1.6 937,399 - -0.7 937,399 - -0.8 937,399 - -0.3 937,453 + +1.6 937,453 + -0.3 937,453 + -1.7 937,453 + +0.2 937,453 + -0.1 937,453 + -2.2 937,453 + +0.1 937,453 + -0.6 937,453 + -0.2 937,453 + -0.2 937,453 + +1.8 937,453 + -1.5 937,454 - +0.3 937,454 - -1.6 937,454 - -2.0 937,454 - -0.2 937,454 - -0.7 937,454 - +0.5 937,454 - -1.6 937,454 - -2.9 937,454 - -0.5 937,454 - -0.5 937,454 - -0.5 937,454 - -1.3 937,454 - -1.3 937,454 - -0.7 937,454 - -1.2 937,454 - -2.2 937,454 - +0.4 937,454 - +0.8 937,454 - -0.3 937,459 + +0.6 937,459 + -0.4 937,459 + -1.3 937,459 + -2.4 937,459 + -1.2 937,460 - +0.8 937,460 - -1.5 937,460 - +0.5 937,460 - -1.6 937,460 - -0.5 937,477 + +1.7 937,477 + -0.7 937,477 + -0.4 937,478 - +0.4 937,523 + IAI47_04465 0.13 -0.8 937,523 + IAI47_04465 0.13 -0.9 937,524 - IAI47_04465 0.13 -0.4 937,559 + IAI47_04465 0.16 -0.5 937,583 + IAI47_04465 0.18 -0.7 937,584 - IAI47_04465 0.18 -0.5 937,591 + IAI47_04465 0.19 +0.1 937,591 + IAI47_04465 0.19 +0.5 937,591 + IAI47_04465 0.19 +1.3 937,594 - IAI47_04465 0.19 -1.7 937,641 + IAI47_04465 0.22 +1.0 937,641 + IAI47_04465 0.22 -0.1 937,641 + IAI47_04465 0.22 +0.8 937,641 + IAI47_04465 0.22 -2.0 937,641 + IAI47_04465 0.22 -2.5 937,641 + IAI47_04465 0.22 +0.1 937,641 + IAI47_04465 0.22 -1.2 937,642 - IAI47_04465 0.23 +1.3 937,642 - IAI47_04465 0.23 +0.4 937,642 - IAI47_04465 0.23 -0.4 937,642 - IAI47_04465 0.23 +0.6 937,642 - IAI47_04465 0.23 -1.6 937,642 - IAI47_04465 0.23 +0.6 937,642 - IAI47_04465 0.23 -0.7 937,642 - IAI47_04465 0.23 +0.4 937,642 - IAI47_04465 0.23 +0.3 937,685 - IAI47_04465 0.26 +0.8 937,731 + IAI47_04465 0.29 -0.8 937,731 + IAI47_04465 0.29 +0.7 937,745 + IAI47_04465 0.31 -2.2 937,762 + IAI47_04465 0.32 +1.3 937,762 + IAI47_04465 0.32 +0.1 937,763 - IAI47_04465 0.32 +0.7 937,763 - IAI47_04465 0.32 -0.2 937,763 - IAI47_04465 0.32 +0.1 937,763 - IAI47_04465 0.32 +0.4 937,780 + IAI47_04465 0.33 +0.1 937,780 + IAI47_04465 0.33 -1.5 937,780 + IAI47_04465 0.33 -0.5 937,780 + IAI47_04465 0.33 -0.4 937,780 + IAI47_04465 0.33 +1.3 937,780 + IAI47_04465 0.33 -1.7 937,780 + IAI47_04465 0.33 -0.2 937,780 + IAI47_04465 0.33 +0.1 937,780 + IAI47_04465 0.33 +0.1 937,780 + IAI47_04465 0.33 -2.0 937,781 - IAI47_04465 0.33 +0.1 937,781 - IAI47_04465 0.33 -0.4 937,781 - IAI47_04465 0.33 -0.2 937,781 - IAI47_04465 0.33 -0.7 937,781 - IAI47_04465 0.33 -0.7 937,781 - IAI47_04465 0.33 -0.2 937,781 - IAI47_04465 0.33 +0.3 937,781 - IAI47_04465 0.33 -2.2 937,819 + IAI47_04465 0.36 +0.6 937,819 + IAI47_04465 0.36 +1.4 937,819 + IAI47_04465 0.36 +0.3 937,819 + IAI47_04465 0.36 +0.3 937,819 + IAI47_04465 0.36 -0.9 937,819 + IAI47_04465 0.36 -0.6 937,819 + IAI47_04465 0.36 +1.1 937,819 + IAI47_04465 0.36 +0.6 937,819 + IAI47_04465 0.36 +0.2 937,820 - IAI47_04465 0.36 -0.3 937,820 - IAI47_04465 0.36 +2.2 937,820 - IAI47_04465 0.36 -0.5 937,820 - IAI47_04465 0.36 -1.0 937,820 - IAI47_04465 0.36 -0.7 937,820 - IAI47_04465 0.36 -0.8 937,834 + IAI47_04465 0.37 -0.2 937,973 + IAI47_04465 0.48 -1.5 937,973 + IAI47_04465 0.48 +0.8 937,974 - IAI47_04465 0.48 -0.4 938,007 + IAI47_04465 0.51 -0.3 938,007 + IAI47_04465 0.51 +0.4 938,007 + IAI47_04465 0.51 -0.6 938,008 - IAI47_04465 0.51 -0.4 938,008 - IAI47_04465 0.51 +1.3 938,051 + IAI47_04465 0.54 +1.2 938,065 - IAI47_04465 0.55 -0.6 938,119 + IAI47_04465 0.60 -1.0 938,119 + IAI47_04465 0.60 -0.9 938,120 - 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Or see this region's nucleotide sequence