Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02865 and IAI47_02870 are separated by 202 nucleotides IAI47_02870 and IAI47_02875 overlap by 1 nucleotides IAI47_02875 and IAI47_02880 are separated by 2 nucleotides IAI47_02880 and IAI47_02885 are separated by 35 nucleotides IAI47_02885 and IAI47_02890 are separated by 189 nucleotides IAI47_02890 and IAI47_02895 overlap by 1 nucleotides
IAI47_02865: IAI47_02865 - DoxX family protein, at 591,523 to 591,918
_02865
IAI47_02870: IAI47_02870 - YqjK-like family protein, at 592,121 to 592,405
_02870
IAI47_02875: IAI47_02875 - phage holin family protein, at 592,405 to 592,800
_02875
IAI47_02880: IAI47_02880 - DUF883 domain-containing protein, at 592,803 to 593,108
_02880
IAI47_02885: IAI47_02885 - DUF1090 domain-containing protein, at 593,144 to 593,518
_02885
IAI47_02890: IAI47_02890 - EnvZ/OmpR regulon moderator MzrA, at 593,708 to 594,055
_02890
IAI47_02895: IAI47_02895 - DedA family protein, at 594,055 to 594,729
_02895
Position (kb) 592
593
594 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.819 kb on + strand, within IAI47_02865 at 591.820 kb on - strand, within IAI47_02865 at 591.820 kb on - strand, within IAI47_02865 at 591.820 kb on - strand, within IAI47_02865 at 591.827 kb on + strand, within IAI47_02865 at 591.828 kb on - strand, within IAI47_02865 at 591.889 kb on + strand at 591.889 kb on + strand at 591.890 kb on - strand at 591.892 kb on + strand at 591.923 kb on + strand at 591.924 kb on - strand at 591.924 kb on - strand at 591.968 kb on + strand at 591.968 kb on + strand at 591.968 kb on + strand at 591.968 kb on + strand at 591.969 kb on - strand at 591.969 kb on - strand at 591.969 kb on - strand at 591.969 kb on - strand at 591.986 kb on + strand at 591.986 kb on + strand at 591.986 kb on + strand at 591.987 kb on - strand at 591.987 kb on - strand at 592.019 kb on + strand at 592.019 kb on + strand at 592.019 kb on + strand at 592.019 kb on + strand at 592.020 kb on - strand at 592.020 kb on - strand at 592.020 kb on - strand at 592.020 kb on - strand at 592.041 kb on + strand at 592.042 kb on - strand at 592.042 kb on - strand at 592.042 kb on - strand at 592.050 kb on + strand at 592.050 kb on + strand at 592.050 kb on + strand at 592.051 kb on - strand at 592.051 kb on - strand at 592.051 kb on - strand at 592.052 kb on + strand at 592.052 kb on + strand at 592.053 kb on - strand at 592.053 kb on - strand at 592.053 kb on - strand at 592.053 kb on - strand at 592.111 kb on - strand at 592.114 kb on - strand at 592.144 kb on + strand at 592.144 kb on + strand at 592.145 kb on - strand at 592.145 kb on - strand at 592.145 kb on - strand at 592.145 kb on - strand at 592.159 kb on + strand, within IAI47_02870 at 592.160 kb on - strand, within IAI47_02870 at 592.193 kb on + strand, within IAI47_02870 at 592.194 kb on - strand, within IAI47_02870 at 592.201 kb on + strand, within IAI47_02870 at 592.210 kb on + strand, within IAI47_02870 at 592.211 kb on - strand, within IAI47_02870 at 592.222 kb on - strand, within IAI47_02870 at 592.254 kb on + strand, within IAI47_02870 at 592.255 kb on - strand, within IAI47_02870 at 592.262 kb on + strand, within IAI47_02870 at 592.262 kb on + strand, within IAI47_02870 at 592.262 kb on + strand, within IAI47_02870 at 592.262 kb on + strand, within IAI47_02870 at 592.262 kb on + strand, within IAI47_02870 at 592.262 kb on + strand, within IAI47_02870 at 592.263 kb on - strand, within IAI47_02870 at 592.263 kb on - strand, within IAI47_02870 at 592.263 kb on - strand, within IAI47_02870 at 592.276 kb on + strand, within IAI47_02870 at 592.276 kb on + strand, within IAI47_02870 at 592.277 kb on - strand, within IAI47_02870 at 592.277 kb on - strand, within IAI47_02870 at 592.293 kb on + strand, within IAI47_02870 at 592.334 kb on + strand, within IAI47_02870 at 592.334 kb on + strand, within IAI47_02870 at 592.334 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.364 kb on - strand, within IAI47_02870 at 592.364 kb on - strand, within IAI47_02870 at 592.364 kb on - strand, within IAI47_02870 at 592.364 kb on - strand, within IAI47_02870 at 592.429 kb on - strand at 592.449 kb on + strand, within IAI47_02875 at 592.449 kb on + strand, within IAI47_02875 at 592.449 kb on + strand, within IAI47_02875 at 592.450 kb on - strand, within IAI47_02875 at 592.455 kb on + strand, within IAI47_02875 at 592.456 kb on - strand, within IAI47_02875 at 592.456 kb on - strand, within IAI47_02875 at 592.463 kb on - strand, within IAI47_02875 at 592.562 kb on + strand, within IAI47_02875 at 592.562 kb on + strand, within IAI47_02875 at 592.562 kb on + strand, within IAI47_02875 at 592.563 kb on - strand, within IAI47_02875 at 592.573 kb on + strand, within IAI47_02875 at 592.573 kb on + strand, within IAI47_02875 at 592.573 kb on + strand, within IAI47_02875 at 592.573 kb on + strand, within IAI47_02875 at 592.573 kb on + strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.584 kb on + strand, within IAI47_02875 at 592.665 kb on + strand, within IAI47_02875 at 592.665 kb on + strand, within IAI47_02875 at 592.666 kb on - strand, within IAI47_02875 at 592.666 kb on - strand, within IAI47_02875 at 592.740 kb on + strand, within IAI47_02875 at 592.740 kb on + strand, within IAI47_02875 at 592.755 kb on + strand, within IAI47_02875 at 592.755 kb on + strand, within IAI47_02875 at 592.755 kb on + strand, within IAI47_02875 at 592.756 kb on - strand, within IAI47_02875 at 592.756 kb on - strand, within IAI47_02875 at 592.800 kb on + strand at 592.800 kb on + strand at 592.800 kb on + strand at 592.800 kb on + strand at 592.800 kb on + strand at 592.801 kb on - strand at 592.801 kb on - strand at 592.801 kb on - strand at 592.804 kb on + strand at 592.804 kb on + strand at 592.804 kb on + strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.885 kb on + strand, within IAI47_02880 at 592.885 kb on + strand, within IAI47_02880 at 592.885 kb on + strand, within IAI47_02880 at 592.885 kb on + strand, within IAI47_02880 at 592.885 kb on + strand, within IAI47_02880 at 592.886 kb on - strand, within IAI47_02880 at 592.886 kb on - strand, within IAI47_02880 at 592.886 kb on - strand, within IAI47_02880 at 592.886 kb on - strand, within IAI47_02880 at 592.886 kb on - strand, within IAI47_02880 at 592.916 kb on + strand, within IAI47_02880 at 592.998 kb on - strand, within IAI47_02880 at 593.025 kb on - strand, within IAI47_02880 at 593.037 kb on + strand, within IAI47_02880 at 593.038 kb on - strand, within IAI47_02880 at 593.038 kb on - strand, within IAI47_02880 at 593.038 kb on - strand, within IAI47_02880 at 593.038 kb on - strand, within IAI47_02880 at 593.052 kb on - strand, within IAI47_02880 at 593.103 kb on - strand at 593.109 kb on - strand at 593.136 kb on - strand at 593.136 kb on - strand at 593.209 kb on + strand, within IAI47_02885 at 593.209 kb on + strand, within IAI47_02885 at 593.293 kb on + strand, within IAI47_02885 at 593.294 kb on - strand, within IAI47_02885 at 593.294 kb on - strand, within IAI47_02885 at 593.327 kb on - strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.393 kb on - strand, within IAI47_02885 at 593.393 kb on - strand, within IAI47_02885 at 593.425 kb on + strand, within IAI47_02885 at 593.425 kb on + strand, within IAI47_02885 at 593.426 kb on - strand, within IAI47_02885 at 593.426 kb on - strand, within IAI47_02885 at 593.426 kb on - strand, within IAI47_02885 at 593.504 kb on + strand at 593.504 kb on + strand at 593.504 kb on + strand at 593.504 kb on + strand at 593.505 kb on - strand at 593.505 kb on - strand at 593.505 kb on - strand at 593.505 kb on - strand at 593.511 kb on + strand at 593.511 kb on + strand at 593.511 kb on + strand at 593.511 kb on + strand at 593.512 kb on - strand at 593.512 kb on - strand at 593.512 kb on - strand at 593.512 kb on - strand at 593.602 kb on + strand at 593.603 kb on - strand at 593.608 kb on + strand at 593.608 kb on + strand at 593.608 kb on + strand at 593.609 kb on - strand at 593.609 kb on - strand at 593.609 kb on - strand at 593.619 kb on - strand at 593.622 kb on - strand at 593.647 kb on + strand at 593.648 kb on - strand at 593.648 kb on - strand at 593.648 kb on - strand at 593.709 kb on + strand at 593.709 kb on + strand at 593.709 kb on + strand at 593.709 kb on + strand at 593.710 kb on - strand at 593.752 kb on + strand, within IAI47_02890 at 593.752 kb on + strand, within IAI47_02890 at 593.752 kb on + strand, within IAI47_02890 at 593.752 kb on + strand, within IAI47_02890 at 593.752 kb on + strand, within IAI47_02890 at 593.752 kb on + strand, within IAI47_02890 at 593.752 kb on + strand, within IAI47_02890 at 593.753 kb on - strand, within IAI47_02890 at 593.753 kb on - strand, within IAI47_02890 at 593.753 kb on - strand, within IAI47_02890 at 593.753 kb on - strand, within IAI47_02890 at 593.753 kb on - strand, within IAI47_02890 at 593.753 kb on - strand, within IAI47_02890 at 593.850 kb on - strand, within IAI47_02890 at 593.850 kb on - strand, within IAI47_02890 at 593.861 kb on - strand, within IAI47_02890 at 593.866 kb on + strand, within IAI47_02890 at 593.867 kb on - strand, within IAI47_02890 at 593.867 kb on - strand, within IAI47_02890 at 593.867 kb on - strand, within IAI47_02890 at 593.879 kb on + strand, within IAI47_02890 at 593.879 kb on + strand, within IAI47_02890 at 593.879 kb on + strand, within IAI47_02890 at 593.880 kb on - strand, within IAI47_02890 at 593.880 kb on - strand, within IAI47_02890 at 593.880 kb on - strand, within IAI47_02890 at 593.880 kb on - strand, within IAI47_02890 at 593.880 kb on - strand, within IAI47_02890 at 593.880 kb on - strand, within IAI47_02890 at 593.889 kb on + strand, within IAI47_02890 at 593.889 kb on + strand, within IAI47_02890 at 593.889 kb on + strand, within IAI47_02890 at 593.890 kb on - strand, within IAI47_02890 at 593.890 kb on - strand, within IAI47_02890 at 593.890 kb on - strand, within IAI47_02890 at 593.895 kb on + strand, within IAI47_02890 at 593.895 kb on + strand, within IAI47_02890 at 593.895 kb on + strand, within IAI47_02890 at 593.896 kb on - strand, within IAI47_02890 at 593.896 kb on - strand, within IAI47_02890 at 593.896 kb on - strand, within IAI47_02890 at 593.896 kb on - strand, within IAI47_02890 at 593.896 kb on - strand, within IAI47_02890 at 594.031 kb on + strand at 594.031 kb on + strand at 594.031 kb on + strand at 594.031 kb on + strand at 594.031 kb on + strand at 594.031 kb on + strand at 594.031 kb on + strand at 594.037 kb on + strand at 594.037 kb on + strand at 594.038 kb on - strand at 594.090 kb on + strand at 594.097 kb on + strand at 594.097 kb on + strand at 594.097 kb on + strand at 594.097 kb on + strand at 594.097 kb on + strand at 594.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 591,807 + IAI47_02865 0.72 +0.0 591,807 + IAI47_02865 0.72 -0.4 591,807 + IAI47_02865 0.72 +1.0 591,807 + IAI47_02865 0.72 -0.2 591,807 + IAI47_02865 0.72 -1.2 591,807 + IAI47_02865 0.72 +0.6 591,807 + IAI47_02865 0.72 +0.5 591,807 + IAI47_02865 0.72 +0.2 591,807 + IAI47_02865 0.72 -1.5 591,807 + IAI47_02865 0.72 +0.7 591,807 + IAI47_02865 0.72 -0.9 591,808 - IAI47_02865 0.72 -0.5 591,808 - IAI47_02865 0.72 +0.1 591,808 - IAI47_02865 0.72 -0.3 591,808 - IAI47_02865 0.72 +0.2 591,808 - IAI47_02865 0.72 -0.8 591,808 - IAI47_02865 0.72 -0.8 591,808 - IAI47_02865 0.72 +0.8 591,808 - IAI47_02865 0.72 -0.8 591,808 - IAI47_02865 0.72 -0.2 591,808 - IAI47_02865 0.72 -0.2 591,808 - IAI47_02865 0.72 +0.8 591,809 + IAI47_02865 0.72 +0.3 591,809 + IAI47_02865 0.72 -0.4 591,809 + IAI47_02865 0.72 +0.7 591,809 + IAI47_02865 0.72 -0.6 591,809 + IAI47_02865 0.72 -0.0 591,809 + IAI47_02865 0.72 +2.8 591,809 + IAI47_02865 0.72 -0.9 591,809 + IAI47_02865 0.72 +1.1 591,809 + IAI47_02865 0.72 +1.3 591,809 + IAI47_02865 0.72 -1.0 591,809 + IAI47_02865 0.72 +0.0 591,810 - IAI47_02865 0.72 -1.8 591,810 - IAI47_02865 0.72 -0.4 591,810 - IAI47_02865 0.72 +0.4 591,810 - IAI47_02865 0.72 -0.5 591,810 - IAI47_02865 0.72 +1.4 591,810 - IAI47_02865 0.72 +0.6 591,810 - IAI47_02865 0.72 +0.7 591,810 - IAI47_02865 0.72 -0.4 591,810 - IAI47_02865 0.72 +1.0 591,819 + IAI47_02865 0.75 -0.4 591,820 - IAI47_02865 0.75 -0.2 591,820 - IAI47_02865 0.75 +1.4 591,820 - IAI47_02865 0.75 -0.7 591,827 + IAI47_02865 0.77 -0.2 591,828 - IAI47_02865 0.77 +1.1 591,889 + +0.2 591,889 + -0.6 591,890 - +2.4 591,892 + -0.8 591,923 + +1.0 591,924 - +1.7 591,924 - -0.4 591,968 + -1.6 591,968 + -1.5 591,968 + +0.4 591,968 + -0.2 591,969 - +0.8 591,969 - -1.1 591,969 - +2.1 591,969 - -0.2 591,986 + -0.4 591,986 + -0.2 591,986 + +0.5 591,987 - +0.4 591,987 - +0.1 592,019 + +1.1 592,019 + +0.2 592,019 + +1.1 592,019 + -0.8 592,020 - +0.2 592,020 - +0.3 592,020 - -1.0 592,020 - +0.4 592,041 + +0.3 592,042 - +0.1 592,042 - +1.2 592,042 - -0.4 592,050 + -0.2 592,050 + -1.8 592,050 + +0.4 592,051 - -0.2 592,051 - -0.2 592,051 - -1.0 592,052 + +1.4 592,052 + -1.0 592,053 - +0.2 592,053 - -0.2 592,053 - -1.3 592,053 - -1.2 592,111 - +0.3 592,114 - -1.3 592,144 + +0.8 592,144 + +0.4 592,145 - -0.8 592,145 - +0.2 592,145 - -0.8 592,145 - +0.5 592,159 + IAI47_02870 0.13 -1.2 592,160 - IAI47_02870 0.14 +1.4 592,193 + IAI47_02870 0.25 +0.1 592,194 - IAI47_02870 0.26 -2.2 592,201 + IAI47_02870 0.28 -1.0 592,210 + IAI47_02870 0.31 +0.0 592,211 - IAI47_02870 0.32 -0.5 592,222 - IAI47_02870 0.35 -0.5 592,254 + IAI47_02870 0.47 +0.8 592,255 - IAI47_02870 0.47 -0.8 592,262 + IAI47_02870 0.49 +0.6 592,262 + IAI47_02870 0.49 -0.5 592,262 + IAI47_02870 0.49 -0.4 592,262 + IAI47_02870 0.49 +1.7 592,262 + IAI47_02870 0.49 -0.2 592,262 + IAI47_02870 0.49 +0.5 592,263 - IAI47_02870 0.50 -0.5 592,263 - IAI47_02870 0.50 +0.5 592,263 - IAI47_02870 0.50 +1.6 592,276 + IAI47_02870 0.54 +1.3 592,276 + IAI47_02870 0.54 +0.3 592,277 - IAI47_02870 0.55 +0.0 592,277 - IAI47_02870 0.55 -0.7 592,293 + IAI47_02870 0.60 -0.2 592,334 + IAI47_02870 0.75 +0.6 592,334 + IAI47_02870 0.75 +1.4 592,334 + IAI47_02870 0.75 -0.4 592,363 + IAI47_02870 0.85 -0.2 592,363 + IAI47_02870 0.85 +0.6 592,363 + IAI47_02870 0.85 -2.0 592,363 + IAI47_02870 0.85 -1.4 592,363 + IAI47_02870 0.85 -0.0 592,363 + IAI47_02870 0.85 +0.3 592,363 + IAI47_02870 0.85 +0.2 592,363 + IAI47_02870 0.85 -1.2 592,364 - IAI47_02870 0.85 +0.5 592,364 - IAI47_02870 0.85 +0.4 592,364 - IAI47_02870 0.85 +1.2 592,364 - IAI47_02870 0.85 -0.6 592,429 - -0.8 592,449 + IAI47_02875 0.11 -0.6 592,449 + IAI47_02875 0.11 +0.0 592,449 + IAI47_02875 0.11 +0.2 592,450 - IAI47_02875 0.11 +0.1 592,455 + IAI47_02875 0.13 +0.8 592,456 - IAI47_02875 0.13 +0.3 592,456 - IAI47_02875 0.13 -0.2 592,463 - IAI47_02875 0.15 -1.0 592,562 + IAI47_02875 0.40 -0.7 592,562 + IAI47_02875 0.40 -1.8 592,562 + IAI47_02875 0.40 +0.2 592,563 - IAI47_02875 0.40 +1.2 592,573 + IAI47_02875 0.42 +0.5 592,573 + IAI47_02875 0.42 +0.8 592,573 + IAI47_02875 0.42 +0.8 592,573 + IAI47_02875 0.42 +0.4 592,573 + IAI47_02875 0.42 -1.0 592,574 - IAI47_02875 0.43 -0.1 592,574 - IAI47_02875 0.43 -1.0 592,574 - IAI47_02875 0.43 -0.3 592,574 - IAI47_02875 0.43 -2.0 592,574 - IAI47_02875 0.43 -0.3 592,574 - IAI47_02875 0.43 -1.3 592,574 - IAI47_02875 0.43 +0.9 592,584 + IAI47_02875 0.45 -0.7 592,665 + IAI47_02875 0.66 -0.2 592,665 + IAI47_02875 0.66 -0.2 592,666 - 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Or see this region's nucleotide sequence