Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00930 and IAI47_00935 overlap by 18 nucleotides IAI47_00935 and IAI47_00940 are separated by 192 nucleotides IAI47_00940 and IAI47_00945 are separated by 14 nucleotides
IAI47_00930: IAI47_00930 - DNA-binding transcriptional regulator OxyR, at 198,897 to 199,814
_00930
IAI47_00935: IAI47_00935 - Si-specific NAD(P)(+) transhydrogenase, at 199,797 to 201,197
_00935
IAI47_00940: IAI47_00940 - HTH-type transcriptional repressor FabR, at 201,390 to 202,037
_00940
IAI47_00945: IAI47_00945 - YijD family membrane protein, at 202,052 to 202,405
_00945
Position (kb) 199
200
201
202 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 198.814 kb on + strand at 198.814 kb on + strand at 198.815 kb on - strand at 198.815 kb on - strand at 198.853 kb on + strand at 198.854 kb on - strand at 198.858 kb on + strand at 198.859 kb on - strand at 198.892 kb on + strand at 198.892 kb on + strand at 198.892 kb on + strand at 198.892 kb on + strand at 198.892 kb on + strand at 198.893 kb on - strand at 198.893 kb on - strand at 198.895 kb on + strand at 198.895 kb on + strand at 198.895 kb on + strand at 198.895 kb on + strand at 198.895 kb on + strand at 198.895 kb on + strand at 198.896 kb on - strand at 198.902 kb on + strand at 198.902 kb on + strand at 198.902 kb on + strand at 198.902 kb on + strand at 198.903 kb on - strand at 198.903 kb on - strand at 198.903 kb on - strand at 198.903 kb on - strand at 198.903 kb on - strand at 198.918 kb on + strand at 198.918 kb on + strand at 198.918 kb on + strand at 198.919 kb on - strand at 198.919 kb on - strand at 198.992 kb on - strand, within IAI47_00930 at 198.992 kb on - strand, within IAI47_00930 at 199.008 kb on - strand, within IAI47_00930 at 199.055 kb on + strand, within IAI47_00930 at 199.056 kb on - strand, within IAI47_00930 at 199.056 kb on - strand, within IAI47_00930 at 199.081 kb on + strand, within IAI47_00930 at 199.081 kb on + strand, within IAI47_00930 at 199.103 kb on + strand, within IAI47_00930 at 199.103 kb on + strand, within IAI47_00930 at 199.104 kb on - strand, within IAI47_00930 at 199.178 kb on + strand, within IAI47_00930 at 199.179 kb on - strand, within IAI47_00930 at 199.207 kb on - strand, within IAI47_00930 at 199.210 kb on + strand, within IAI47_00930 at 199.210 kb on + strand, within IAI47_00930 at 199.210 kb on + strand, within IAI47_00930 at 199.211 kb on - strand, within IAI47_00930 at 199.224 kb on - strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.404 kb on + strand, within IAI47_00930 at 199.404 kb on + strand, within IAI47_00930 at 199.405 kb on - strand, within IAI47_00930 at 199.405 kb on - strand, within IAI47_00930 at 199.544 kb on + strand, within IAI47_00930 at 199.544 kb on + strand, within IAI47_00930 at 199.583 kb on + strand, within IAI47_00930 at 199.583 kb on + strand, within IAI47_00930 at 199.584 kb on - strand, within IAI47_00930 at 199.584 kb on - strand, within IAI47_00930 at 199.607 kb on + strand, within IAI47_00930 at 199.607 kb on + strand, within IAI47_00930 at 199.607 kb on + strand, within IAI47_00930 at 199.607 kb on + strand, within IAI47_00930 at 199.608 kb on - strand, within IAI47_00930 at 199.608 kb on - strand, within IAI47_00930 at 199.608 kb on - strand, within IAI47_00930 at 199.643 kb on + strand, within IAI47_00930 at 199.662 kb on + strand, within IAI47_00930 at 199.662 kb on + strand, within IAI47_00930 at 199.662 kb on + strand, within IAI47_00930 at 199.662 kb on + strand, within IAI47_00930 at 199.663 kb on - strand, within IAI47_00930 at 199.674 kb on + strand, within IAI47_00930 at 199.674 kb on + strand, within IAI47_00930 at 199.674 kb on + strand, within IAI47_00930 at 199.675 kb on - strand, within IAI47_00930 at 199.710 kb on + strand, within IAI47_00930 at 199.711 kb on - strand, within IAI47_00930 at 199.741 kb on - strand at 199.763 kb on + strand at 199.763 kb on + strand at 199.764 kb on - strand at 199.764 kb on - strand at 199.764 kb on - strand at 199.782 kb on + strand at 199.782 kb on + strand at 199.799 kb on - strand at 199.799 kb on - strand at 199.799 kb on - strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.863 kb on - strand at 199.863 kb on - strand at 199.863 kb on - strand at 199.863 kb on - strand at 199.863 kb on - strand at 200.057 kb on + strand, within IAI47_00935 at 200.146 kb on + strand, within IAI47_00935 at 200.147 kb on - strand, within IAI47_00935 at 200.162 kb on + strand, within IAI47_00935 at 200.279 kb on - strand, within IAI47_00935 at 200.279 kb on - strand, within IAI47_00935 at 200.302 kb on + strand, within IAI47_00935 at 200.302 kb on + strand, within IAI47_00935 at 200.302 kb on + strand, within IAI47_00935 at 200.302 kb on + strand, within IAI47_00935 at 200.302 kb on + strand, within IAI47_00935 at 200.303 kb on - strand, within IAI47_00935 at 200.399 kb on - strand, within IAI47_00935 at 200.525 kb on - strand, within IAI47_00935 at 200.525 kb on - strand, within IAI47_00935 at 200.627 kb on - strand, within IAI47_00935 at 200.657 kb on + strand, within IAI47_00935 at 200.658 kb on - strand, within IAI47_00935 at 200.658 kb on - strand, within IAI47_00935 at 200.687 kb on + strand, within IAI47_00935 at 200.688 kb on - strand, within IAI47_00935 at 200.693 kb on + strand, within IAI47_00935 at 200.694 kb on - strand, within IAI47_00935 at 200.723 kb on + strand, within IAI47_00935 at 200.828 kb on + strand, within IAI47_00935 at 200.885 kb on - strand, within IAI47_00935 at 200.937 kb on - strand, within IAI47_00935 at 201.179 kb on - strand at 201.213 kb on + strand at 201.214 kb on - strand at 201.241 kb on - strand at 201.267 kb on - strand at 201.268 kb on + strand at 201.268 kb on + strand at 201.269 kb on - strand at 201.269 kb on - strand at 201.337 kb on + strand at 201.337 kb on + strand at 201.338 kb on - strand at 201.354 kb on + strand at 201.354 kb on + strand at 201.354 kb on + strand at 201.354 kb on + strand at 201.355 kb on - strand at 201.355 kb on - strand at 201.356 kb on + strand at 201.357 kb on - strand at 201.357 kb on - strand at 201.376 kb on + strand at 201.419 kb on + strand at 201.419 kb on + strand at 201.419 kb on + strand at 201.420 kb on - strand at 201.420 kb on - strand at 201.420 kb on - strand at 201.428 kb on + strand at 201.428 kb on + strand at 201.428 kb on + strand at 201.428 kb on + strand at 201.429 kb on - strand at 201.429 kb on - strand at 201.429 kb on - strand at 201.653 kb on + strand, within IAI47_00940 at 201.653 kb on + strand, within IAI47_00940 at 201.654 kb on - strand, within IAI47_00940 at 201.654 kb on - strand, within IAI47_00940 at 201.674 kb on + strand, within IAI47_00940 at 201.675 kb on - strand, within IAI47_00940 at 201.675 kb on - strand, within IAI47_00940 at 201.675 kb on - strand, within IAI47_00940 at 201.715 kb on + strand, within IAI47_00940 at 201.716 kb on - strand, within IAI47_00940 at 201.782 kb on + strand, within IAI47_00940 at 201.782 kb on + strand, within IAI47_00940 at 201.782 kb on + strand, within IAI47_00940 at 201.783 kb on - strand, within IAI47_00940 at 201.783 kb on - strand, within IAI47_00940 at 201.801 kb on + strand, within IAI47_00940 at 201.801 kb on + strand, within IAI47_00940 at 201.801 kb on + strand, within IAI47_00940 at 201.801 kb on + strand, within IAI47_00940 at 201.801 kb on + strand, within IAI47_00940 at 201.801 kb on + strand, within IAI47_00940 at 201.802 kb on - strand, within IAI47_00940 at 201.802 kb on - strand, within IAI47_00940 at 201.802 kb on - strand, within IAI47_00940 at 201.837 kb on - strand, within IAI47_00940 at 201.920 kb on + strand, within IAI47_00940 at 201.920 kb on + strand, within IAI47_00940 at 201.920 kb on + strand, within IAI47_00940 at 201.920 kb on + strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.943 kb on + strand, within IAI47_00940 at 201.943 kb on + strand, within IAI47_00940 at 201.943 kb on + strand, within IAI47_00940 at 201.943 kb on + strand, within IAI47_00940 at 201.944 kb on - strand, within IAI47_00940 at 201.944 kb on - strand, within IAI47_00940 at 201.944 kb on - strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.973 kb on - strand at 201.973 kb on - strand at 201.973 kb on - strand at 201.973 kb on - strand at 201.975 kb on + strand at 201.975 kb on + strand at 201.975 kb on + strand at 201.975 kb on + strand at 201.975 kb on + strand at 201.976 kb on - strand at 201.976 kb on - strand at 201.976 kb on - strand at 201.976 kb on - strand at 201.982 kb on - strand at 202.039 kb on + strand at 202.039 kb on + strand at 202.039 kb on + strand at 202.039 kb on + strand at 202.040 kb on - strand at 202.040 kb on - strand at 202.066 kb on + strand at 202.075 kb on + strand at 202.076 kb on - strand at 202.099 kb on + strand, within IAI47_00945 at 202.099 kb on + strand, within IAI47_00945 at 202.099 kb on + strand, within IAI47_00945 at 202.099 kb on + strand, within IAI47_00945 at 202.102 kb on + strand, within IAI47_00945 at 202.110 kb on + strand, within IAI47_00945 at 202.110 kb on + strand, within IAI47_00945
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 198,814 + +1.5 198,814 + +1.3 198,815 - +0.2 198,815 - -0.1 198,853 + -0.0 198,854 - +0.1 198,858 + -0.1 198,859 - +0.3 198,892 + +0.1 198,892 + +0.9 198,892 + +0.5 198,892 + -0.3 198,892 + -1.1 198,893 - +0.7 198,893 - +0.4 198,895 + +0.9 198,895 + -0.5 198,895 + +1.1 198,895 + -1.0 198,895 + +1.0 198,895 + -0.1 198,896 - -0.0 198,902 + -1.0 198,902 + +1.2 198,902 + +0.2 198,902 + +0.4 198,903 - -1.7 198,903 - +2.2 198,903 - +0.5 198,903 - +0.3 198,903 - -0.1 198,918 + +0.9 198,918 + -1.1 198,918 + +0.1 198,919 - -0.7 198,919 - +1.2 198,992 - IAI47_00930 0.10 +0.0 198,992 - IAI47_00930 0.10 -0.1 199,008 - IAI47_00930 0.12 +2.5 199,055 + IAI47_00930 0.17 -2.7 199,056 - IAI47_00930 0.17 -0.0 199,056 - IAI47_00930 0.17 -0.1 199,081 + IAI47_00930 0.20 +0.9 199,081 + IAI47_00930 0.20 -0.4 199,103 + IAI47_00930 0.22 -0.0 199,103 + IAI47_00930 0.22 -0.2 199,104 - IAI47_00930 0.23 +1.2 199,178 + IAI47_00930 0.31 +0.4 199,179 - IAI47_00930 0.31 -0.7 199,207 - IAI47_00930 0.34 +0.5 199,210 + IAI47_00930 0.34 +1.4 199,210 + IAI47_00930 0.34 -0.6 199,210 + IAI47_00930 0.34 -1.1 199,211 - IAI47_00930 0.34 -0.3 199,224 - IAI47_00930 0.36 +1.6 199,263 + IAI47_00930 0.40 +1.6 199,263 + IAI47_00930 0.40 +0.6 199,263 + IAI47_00930 0.40 +1.9 199,263 + IAI47_00930 0.40 +0.9 199,263 + IAI47_00930 0.40 -1.4 199,263 + IAI47_00930 0.40 +0.9 199,263 + IAI47_00930 0.40 -0.1 199,263 + IAI47_00930 0.40 -0.8 199,263 + IAI47_00930 0.40 -0.4 199,263 + IAI47_00930 0.40 +0.0 199,263 + IAI47_00930 0.40 +0.9 199,264 - IAI47_00930 0.40 -0.2 199,264 - IAI47_00930 0.40 -1.4 199,264 - IAI47_00930 0.40 -0.1 199,264 - IAI47_00930 0.40 -0.6 199,264 - IAI47_00930 0.40 -1.1 199,264 - IAI47_00930 0.40 +0.9 199,264 - IAI47_00930 0.40 -1.9 199,264 - IAI47_00930 0.40 -0.6 199,264 - IAI47_00930 0.40 -0.1 199,404 + IAI47_00930 0.55 +0.1 199,404 + IAI47_00930 0.55 -0.3 199,405 - IAI47_00930 0.55 +0.0 199,405 - IAI47_00930 0.55 -0.9 199,544 + IAI47_00930 0.70 +0.9 199,544 + IAI47_00930 0.70 +0.6 199,583 + IAI47_00930 0.75 -0.1 199,583 + IAI47_00930 0.75 +0.4 199,584 - IAI47_00930 0.75 +0.9 199,584 - IAI47_00930 0.75 +1.1 199,607 + IAI47_00930 0.77 +0.5 199,607 + IAI47_00930 0.77 -0.3 199,607 + IAI47_00930 0.77 +2.5 199,607 + IAI47_00930 0.77 -0.1 199,608 - IAI47_00930 0.77 -0.1 199,608 - IAI47_00930 0.77 +0.2 199,608 - IAI47_00930 0.77 +0.2 199,643 + IAI47_00930 0.81 +1.3 199,662 + IAI47_00930 0.83 +1.5 199,662 + IAI47_00930 0.83 -0.8 199,662 + IAI47_00930 0.83 -0.6 199,662 + IAI47_00930 0.83 +0.9 199,663 - IAI47_00930 0.83 +0.7 199,674 + IAI47_00930 0.85 -0.0 199,674 + IAI47_00930 0.85 -1.7 199,674 + IAI47_00930 0.85 -0.4 199,675 - IAI47_00930 0.85 +0.3 199,710 + IAI47_00930 0.89 -0.4 199,711 - IAI47_00930 0.89 +1.5 199,741 - +0.3 199,763 + -0.1 199,763 + +1.2 199,764 - +0.3 199,764 - +0.4 199,764 - +0.1 199,782 + -0.5 199,782 + +0.6 199,799 - -0.4 199,799 - +1.7 199,799 - +0.5 199,862 + +0.1 199,862 + -1.7 199,862 + -0.7 199,862 + -1.1 199,863 - -0.1 199,863 - +0.9 199,863 - -1.9 199,863 - -0.7 199,863 - -0.1 200,057 + IAI47_00935 0.19 -1.7 200,146 + IAI47_00935 0.25 -2.5 200,147 - IAI47_00935 0.25 +0.3 200,162 + IAI47_00935 0.26 -1.1 200,279 - IAI47_00935 0.34 -0.1 200,279 - IAI47_00935 0.34 -0.7 200,302 + IAI47_00935 0.36 -3.0 200,302 + IAI47_00935 0.36 -0.1 200,302 + IAI47_00935 0.36 +1.9 200,302 + IAI47_00935 0.36 -0.7 200,302 + IAI47_00935 0.36 -1.1 200,303 - IAI47_00935 0.36 -1.4 200,399 - IAI47_00935 0.43 -0.7 200,525 - IAI47_00935 0.52 -1.7 200,525 - IAI47_00935 0.52 -1.4 200,627 - IAI47_00935 0.59 -2.1 200,657 + IAI47_00935 0.61 -1.4 200,658 - IAI47_00935 0.61 -3.9 200,658 - IAI47_00935 0.61 -1.3 200,687 + IAI47_00935 0.64 -1.4 200,688 - IAI47_00935 0.64 -1.9 200,693 + IAI47_00935 0.64 -0.1 200,694 - IAI47_00935 0.64 -3.4 200,723 + IAI47_00935 0.66 -1.7 200,828 + IAI47_00935 0.74 -1.1 200,885 - IAI47_00935 0.78 -1.1 200,937 - IAI47_00935 0.81 -1.1 201,179 - +0.9 201,213 + -0.1 201,214 - -0.7 201,241 - +0.3 201,267 - +0.9 201,268 + +1.9 201,268 + +2.1 201,269 - +0.1 201,269 - +0.6 201,337 + +0.9 201,337 + +0.1 201,338 - +1.3 201,354 + -0.7 201,354 + +0.1 201,354 + -1.1 201,354 + +0.7 201,355 - -1.1 201,355 - +1.6 201,356 + +0.0 201,357 - -0.9 201,357 - -0.1 201,376 + +0.9 201,419 + +0.1 201,419 + -0.7 201,419 + +3.5 201,420 - -0.7 201,420 - +1.5 201,420 - +0.3 201,428 + -1.3 201,428 + -1.6 201,428 + +0.1 201,428 + +1.4 201,429 - +0.5 201,429 - +0.1 201,429 - +0.1 201,653 + IAI47_00940 0.41 -0.3 201,653 + IAI47_00940 0.41 -0.1 201,654 - IAI47_00940 0.41 -0.6 201,654 - IAI47_00940 0.41 +0.7 201,674 + IAI47_00940 0.44 -0.9 201,675 - IAI47_00940 0.44 +0.5 201,675 - IAI47_00940 0.44 -0.5 201,675 - IAI47_00940 0.44 +0.4 201,715 + IAI47_00940 0.50 +1.7 201,716 - IAI47_00940 0.50 -0.4 201,782 + IAI47_00940 0.60 +0.1 201,782 + IAI47_00940 0.60 +2.2 201,782 + IAI47_00940 0.60 +2.3 201,783 - IAI47_00940 0.61 +0.4 201,783 - IAI47_00940 0.61 +1.1 201,801 + IAI47_00940 0.63 +0.1 201,801 + IAI47_00940 0.63 +1.2 201,801 + IAI47_00940 0.63 +3.2 201,801 + IAI47_00940 0.63 -0.0 201,801 + IAI47_00940 0.63 -0.2 201,801 + IAI47_00940 0.63 -0.2 201,802 - IAI47_00940 0.64 +1.3 201,802 - IAI47_00940 0.64 +0.3 201,802 - IAI47_00940 0.64 +1.0 201,837 - IAI47_00940 0.69 -0.0 201,920 + IAI47_00940 0.82 -0.1 201,920 + IAI47_00940 0.82 -1.1 201,920 + IAI47_00940 0.82 +0.1 201,920 + IAI47_00940 0.82 +0.6 201,921 - IAI47_00940 0.82 +0.3 201,921 - IAI47_00940 0.82 +0.4 201,921 - IAI47_00940 0.82 +1.8 201,921 - IAI47_00940 0.82 +0.4 201,921 - IAI47_00940 0.82 +1.6 201,921 - IAI47_00940 0.82 +2.1 201,921 - IAI47_00940 0.82 -1.6 201,921 - IAI47_00940 0.82 +1.4 201,921 - IAI47_00940 0.82 +2.1 201,921 - IAI47_00940 0.82 -1.0 201,943 + IAI47_00940 0.85 +0.9 201,943 + IAI47_00940 0.85 +0.4 201,943 + IAI47_00940 0.85 +0.1 201,943 + IAI47_00940 0.85 +0.0 201,944 - IAI47_00940 0.85 +0.9 201,944 - IAI47_00940 0.85 +1.9 201,944 - IAI47_00940 0.85 -0.4 201,972 + IAI47_00940 0.90 +0.0 201,972 + IAI47_00940 0.90 -1.4 201,972 + IAI47_00940 0.90 +2.6 201,972 + IAI47_00940 0.90 +1.6 201,972 + IAI47_00940 0.90 +2.1 201,972 + IAI47_00940 0.90 +0.9 201,972 + IAI47_00940 0.90 +0.5 201,973 - +3.3 201,973 - +0.3 201,973 - +0.1 201,973 - -2.6 201,975 + -3.0 201,975 + +2.2 201,975 + +0.9 201,975 + +2.2 201,975 + +1.1 201,976 - +0.7 201,976 - +2.0 201,976 - +0.2 201,976 - -0.3 201,982 - +0.0 202,039 + -0.5 202,039 + +0.1 202,039 + +1.8 202,039 + -0.1 202,040 - -1.2 202,040 - +0.9 202,066 + -0.5 202,075 + +0.5 202,076 - -0.4 202,099 + IAI47_00945 0.13 -1.2 202,099 + IAI47_00945 0.13 +1.2 202,099 + IAI47_00945 0.13 +1.0 202,099 + IAI47_00945 0.13 -0.4 202,102 + IAI47_00945 0.14 +0.6 202,110 + IAI47_00945 0.16 -1.9 202,110 + IAI47_00945 0.16 -0.3
Or see this region's nucleotide sequence