Strain Fitness in Pantoea sp. MT58 around IAI47_00545

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
122,479	+		IAI47_00535	0.67	+0.1
122,480	-		IAI47_00535	0.67	+0.5
122,480	-		IAI47_00535	0.67	+1.1
122,480	-		IAI47_00535	0.67	-0.9
122,480	-		IAI47_00535	0.67	+0.4
122,497	+		IAI47_00535	0.70	-1.4
122,497	+		IAI47_00535	0.70	+0.2
122,525	-		IAI47_00535	0.74	+3.2
122,525	-		IAI47_00535	0.74	+0.3
122,525	-		IAI47_00535	0.74	+0.3
122,525	-		IAI47_00535	0.74	+0.4
122,525	-		IAI47_00535	0.74	-0.9
122,537	+		IAI47_00535	0.76	+0.2
122,537	+		IAI47_00535	0.76	-1.1
122,537	+		IAI47_00535	0.76	-1.1
122,546	+		IAI47_00535	0.78	+0.2
122,547	-		IAI47_00535	0.78	-1.7
122,547	-		IAI47_00535	0.78	-0.3
122,548	+		IAI47_00535	0.78	-0.3
122,567	-		IAI47_00535	0.81	+0.0
122,662	+				+1.0
122,662	+				+1.1
122,665	+				-0.3
122,666	-				+0.1
122,666	-				+0.6
122,666	-				+3.0
122,681	+				-0.0
122,689	+				+1.1
122,692	+				-0.5
122,692	+				-0.7
122,693	-				-2.4
122,693	-				-0.9
122,693	-				+0.1
122,730	+				-0.6
122,770	-				-1.2
122,773	+				-0.1
122,805	-		IAI47_00540	0.12	-0.1
122,805	-		IAI47_00540	0.12	-0.1
122,826	+		IAI47_00540	0.20	+0.7
122,834	-		IAI47_00540	0.23	-1.0
122,867	+		IAI47_00540	0.36	-0.1
122,867	+		IAI47_00540	0.36	-0.3
123,061	-				+0.9
123,090	+				+0.5
123,091	-				+0.1
123,101	-				+1.0
123,104	+				+0.6
123,109	+				+0.6
123,163	+				+0.9
123,163	+				-1.9
123,163	+				-0.6
123,164	-				+1.1
123,176	+				-1.0
123,177	-				+0.9
123,180	-				-0.3
123,219	+				-0.1
123,219	+				-0.4
123,219	+				-0.0
123,220	-				-0.5
123,220	-				+0.1
123,224	+				-0.3
123,224	+				-0.1
123,225	-				+1.3
123,225	-				-0.2
123,225	-				+1.5
123,225	-				-0.7
123,225	-				-0.7
123,225	-				+0.7
123,225	-				+0.2
123,233	-				+1.1
123,233	-				-1.8
123,287	+				-0.7
123,287	+				-0.2
123,287	+				-0.8
123,288	-				+0.3
123,288	-				+1.1
123,288	-				+0.0
123,288	-				+0.5
123,302	+				+0.3
123,332	+				+0.4
123,332	+				+0.5
123,333	-				-0.4
123,333	-				-0.3
123,333	-				-1.0
123,333	-				+1.4
123,348	+				-0.9
123,348	+				-0.5
123,348	+				+0.3
123,349	-				+0.5
123,349	-				-1.7
123,357	-				-1.8
123,369	+				+0.9
123,370	-				-1.4
123,370	-				-1.1
123,370	-				-0.6
123,377	+				-1.2
123,378	-				+0.1
123,386	+				+0.1
123,386	+				-0.2
123,387	-				+0.6
123,387	-				+0.9
123,387	-				-0.5
123,387	-				-0.1
123,387	-				+0.9
123,387	-				-1.9
123,387	-				+0.7
123,393	+				-0.0
123,393	+				+0.7
123,394	-				-0.5
123,437	+				-0.3
123,437	+				-0.8
123,438	-				+0.5
123,438	-				+1.1
123,438	-				-1.9
123,441	+				+1.0
123,441	+				-0.3
123,441	+				+1.1
123,441	+				+0.6
123,441	+				+1.9
123,441	+				+2.1
123,442	-				-0.4
123,442	-				-0.2
123,442	-				-0.0
123,442	-				-0.1
123,442	-				+0.2
123,474	-				+0.7
123,513	+		IAI47_00545	0.10	-1.4
123,514	-		IAI47_00545	0.11	+0.6
123,535	-		IAI47_00545	0.16	-0.1
123,535	-		IAI47_00545	0.16	-0.4
123,535	-		IAI47_00545	0.16	-0.9
123,535	-		IAI47_00545	0.16	-1.4
123,535	-		IAI47_00545	0.16	+0.2
123,552	+		IAI47_00545	0.20	+0.9
123,553	-		IAI47_00545	0.20	+0.9
123,581	-		IAI47_00545	0.28	+0.9
123,623	+		IAI47_00545	0.38	+0.5
123,623	+		IAI47_00545	0.38	+0.6
123,623	+		IAI47_00545	0.38	-1.4
123,623	+		IAI47_00545	0.38	-0.8
123,623	+		IAI47_00545	0.38	+0.1
123,623	+		IAI47_00545	0.38	-1.4
123,623	+		IAI47_00545	0.38	+0.5
123,623	+		IAI47_00545	0.38	-0.3
123,623	+		IAI47_00545	0.38	+1.9
123,623	+		IAI47_00545	0.38	+0.6
123,623	+		IAI47_00545	0.38	-0.5
123,624	-		IAI47_00545	0.38	-1.9
123,624	-		IAI47_00545	0.38	+0.9
123,624	-		IAI47_00545	0.38	-1.1
123,624	-		IAI47_00545	0.38	+0.2
123,624	-		IAI47_00545	0.38	-0.2
123,624	-		IAI47_00545	0.38	-1.5
123,624	-		IAI47_00545	0.38	+0.9
123,624	-		IAI47_00545	0.38	+0.0
123,664	+		IAI47_00545	0.48	+0.6
123,664	+		IAI47_00545	0.48	-0.3
123,664	+		IAI47_00545	0.48	+0.5
123,664	+		IAI47_00545	0.48	+0.1
123,665	-		IAI47_00545	0.49	+1.5
123,680	+		IAI47_00545	0.53	+0.4
123,680	+		IAI47_00545	0.53	-1.1
123,680	+		IAI47_00545	0.53	+0.3
123,680	+		IAI47_00545	0.53	+0.3
123,680	+		IAI47_00545	0.53	+2.3
123,680	+		IAI47_00545	0.53	+0.3
123,680	+		IAI47_00545	0.53	-0.3
123,680	+		IAI47_00545	0.53	-1.0
123,680	+		IAI47_00545	0.53	+0.1
123,680	+		IAI47_00545	0.53	-0.9
123,680	+		IAI47_00545	0.53	+0.2
123,681	-		IAI47_00545	0.53	+0.3
123,681	-		IAI47_00545	0.53	-0.1
123,681	-		IAI47_00545	0.53	-1.4
123,681	-		IAI47_00545	0.53	-0.6
123,681	-		IAI47_00545	0.53	-0.2
123,681	-		IAI47_00545	0.53	-1.3
123,681	-		IAI47_00545	0.53	-0.1
123,681	-		IAI47_00545	0.53	+0.9
123,721	-		IAI47_00545	0.63	+0.4
123,721	-		IAI47_00545	0.63	+0.9
123,722	-		IAI47_00545	0.63	+0.8
123,748	+		IAI47_00545	0.70	+2.1
123,748	+		IAI47_00545	0.70	+1.2
123,748	+		IAI47_00545	0.70	-0.6
123,748	+		IAI47_00545	0.70	-0.5
123,748	+		IAI47_00545	0.70	+0.9
123,748	+		IAI47_00545	0.70	-1.2
123,749	-		IAI47_00545	0.70	+1.4
123,749	-		IAI47_00545	0.70	+1.2
123,749	-		IAI47_00545	0.70	+0.5
123,749	-		IAI47_00545	0.70	+0.2
123,749	-		IAI47_00545	0.70	-0.9
123,749	-		IAI47_00545	0.70	+1.3
123,749	-		IAI47_00545	0.70	-0.9
123,804	+		IAI47_00545	0.84	-0.0
123,805	-		IAI47_00545	0.84	+0.3
123,805	-		IAI47_00545	0.84	+0.6
123,812	+		IAI47_00545	0.86	+0.7
123,812	+		IAI47_00545	0.86	-0.5
123,820	+		IAI47_00545	0.88	+1.2
123,820	+		IAI47_00545	0.88	-1.6
123,820	+		IAI47_00545	0.88	+0.6
123,821	-		IAI47_00545	0.88	+0.4
123,821	-		IAI47_00545	0.88	+0.4
123,869	+				+0.8
123,869	+				-1.4
123,869	+				-0.7
123,869	+				+0.9
123,869	+				-1.3
123,869	+				+1.1
123,869	+				+0.6
123,870	-				-0.6
123,870	-				-0.3
123,870	-				+0.4
123,870	-				-0.4
123,870	-				-0.4
123,870	-				+0.9
123,870	-				+0.9
123,870	-				+1.0
123,870	-				-0.8
123,883	+				-1.4
123,883	+				-0.0
123,899	+				+0.7
123,899	+				+0.4
123,899	+				+1.5
123,900	-				+0.1
123,931	+				+0.3
123,931	+				+1.6
123,937	+				+2.2
123,937	+				+0.3
123,938	-				-0.3
123,938	-				-0.4
123,964	+				+0.3
124,045	+				-0.7
124,045	+				+0.3
124,045	+				+0.9
124,046	-				+0.4
124,046	-				-0.0
124,117	+				+1.2
124,117	+				-1.1
124,117	+				-0.3
124,118	-				-0.1
124,118	-				-0.8
124,118	-				-0.1
124,197	+		IAI47_00550	0.17	-0.0
124,197	+		IAI47_00550	0.17	+0.5
124,197	+		IAI47_00550	0.17	-1.1
124,197	+		IAI47_00550	0.17	-0.8
124,197	+		IAI47_00550	0.17	+1.1
124,198	-		IAI47_00550	0.17	+0.4
124,198	-		IAI47_00550	0.17	+0.7
124,198	-		IAI47_00550	0.17	+0.3
124,198	-		IAI47_00550	0.17	+3.1
124,198	-		IAI47_00550	0.17	-0.2
124,198	-		IAI47_00550	0.17	-0.3
124,198	-		IAI47_00550	0.17	+1.9
124,198	-		IAI47_00550	0.17	-0.1
124,198	-		IAI47_00550	0.17	+1.1
124,201	+		IAI47_00550	0.17	+1.0
124,201	+		IAI47_00550	0.17	-1.1
124,201	+		IAI47_00550	0.17	+2.0
124,201	+		IAI47_00550	0.17	-0.1
124,202	-		IAI47_00550	0.17	+0.9
124,202	-		IAI47_00550	0.17	-1.1
124,202	-		IAI47_00550	0.17	-1.0
124,202	-		IAI47_00550	0.17	-0.2
124,202	-		IAI47_00550	0.17	+0.1
124,261	+		IAI47_00550	0.22	+0.7
124,330	+		IAI47_00550	0.29	-1.4
124,331	-		IAI47_00550	0.29	+0.3
124,384	+		IAI47_00550	0.33	+0.6
124,384	+		IAI47_00550	0.33	+0.8
124,384	+		IAI47_00550	0.33	+1.4
124,384	+		IAI47_00550	0.33	-0.7
124,385	-		IAI47_00550	0.33	-0.4
124,385	-		IAI47_00550	0.33	-0.0
124,385	-		IAI47_00550	0.33	+0.2
124,385	-		IAI47_00550	0.33	-1.3
124,401	+		IAI47_00550	0.35	+1.3
124,401	+		IAI47_00550	0.35	+0.6
124,401	+		IAI47_00550	0.35	+0.2
124,401	+		IAI47_00550	0.35	+1.3
124,401	+		IAI47_00550	0.35	-0.8
124,401	+		IAI47_00550	0.35	-0.1
124,401	+		IAI47_00550	0.35	-1.0
124,401	+		IAI47_00550	0.35	-0.2
124,401	+		IAI47_00550	0.35	+0.2
124,401	+		IAI47_00550	0.35	-1.1
124,401	+		IAI47_00550	0.35	+1.9
124,401	+		IAI47_00550	0.35	-0.1
124,401	+		IAI47_00550	0.35	+0.1
124,401	+		IAI47_00550	0.35	-1.7
124,401	+		IAI47_00550	0.35	-1.3
124,401	+		IAI47_00550	0.35	+0.5
124,401	+		IAI47_00550	0.35	-1.1
124,401	+		IAI47_00550	0.35	-0.1
124,402	-		IAI47_00550	0.35	-1.1
124,402	-		IAI47_00550	0.35	-0.3
124,402	-		IAI47_00550	0.35	+0.5
124,402	-		IAI47_00550	0.35	+0.6
124,402	-		IAI47_00550	0.35	-0.7
124,405	+		IAI47_00550	0.35	+0.5
124,406	-		IAI47_00550	0.35	+0.9
124,406	-		IAI47_00550	0.35	+0.2
124,406	-		IAI47_00550	0.35	-0.7
124,423	+		IAI47_00550	0.37	+1.2
124,424	-		IAI47_00550	0.37	+0.4
124,424	-		IAI47_00550	0.37	+0.4
124,424	-		IAI47_00550	0.37	+0.9
124,456	+		IAI47_00550	0.40	+0.5
124,457	-		IAI47_00550	0.40	-0.4
124,584	+		IAI47_00550	0.51	+0.9
124,584	+		IAI47_00550	0.51	+0.7
124,584	+		IAI47_00550	0.51	+0.2
124,584	+		IAI47_00550	0.51	+1.8
124,584	+		IAI47_00550	0.51	+1.2
124,585	-		IAI47_00550	0.51	-0.3
124,585	-		IAI47_00550	0.51	+0.4
124,607	+		IAI47_00550	0.53	-0.2
124,607	+		IAI47_00550	0.53	-0.7
124,607	+		IAI47_00550	0.53	-0.7
124,607	+		IAI47_00550	0.53	-1.7
124,622	+		IAI47_00550	0.54	+0.1
124,622	+		IAI47_00550	0.54	+1.6
124,623	-		IAI47_00550	0.54	-0.9
124,637	+		IAI47_00550	0.55	+0.1
124,637	+		IAI47_00550	0.55	-1.1
124,637	+		IAI47_00550	0.55	+0.2
124,637	+		IAI47_00550	0.55	-0.7
124,637	+		IAI47_00550	0.55	-1.7
124,637	+		IAI47_00550	0.55	+0.3
124,637	+		IAI47_00550	0.55	+0.3
124,637	+		IAI47_00550	0.55	+0.9
124,637	+		IAI47_00550	0.55	-0.6
124,638	-		IAI47_00550	0.55	-0.1
124,638	-		IAI47_00550	0.55	+0.2
124,638	-		IAI47_00550	0.55	+0.2
124,694	+		IAI47_00550	0.60	+1.8
124,694	+		IAI47_00550	0.60	-0.2
124,695	-		IAI47_00550	0.60	+0.6
124,695	-		IAI47_00550	0.60	-0.6
124,695	-		IAI47_00550	0.60	-0.0
124,695	-		IAI47_00550	0.60	-0.7
124,695	-		IAI47_00550	0.60	+1.0
124,711	+		IAI47_00550	0.62	-1.5
124,711	+		IAI47_00550	0.62	-2.0
124,712	-		IAI47_00550	0.62	-0.6
124,832	+		IAI47_00550	0.72	-0.9
124,833	-		IAI47_00550	0.73	+0.5
124,833	-		IAI47_00550	0.73	-1.2
124,856	+		IAI47_00550	0.75	-0.3
124,856	+		IAI47_00550	0.75	+0.4
124,856	+		IAI47_00550	0.75	+1.4
124,857	-		IAI47_00550	0.75	+1.5
124,857	-		IAI47_00550	0.75	+1.1
124,857	-		IAI47_00550	0.75	-2.3
124,857	-		IAI47_00550	0.75	+0.1