Strain Fitness in Pantoea sp. MT58 around IAI47_00505

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
114,382	+		IAI47_00500	0.57	-0.6
114,446	+		IAI47_00500	0.60	-0.4
114,446	+		IAI47_00500	0.60	-0.6
114,446	+		IAI47_00500	0.60	+0.5
114,447	-		IAI47_00500	0.60	+0.4
114,447	-		IAI47_00500	0.60	-2.3
114,546	+		IAI47_00500	0.64	+0.3
114,546	+		IAI47_00500	0.64	-1.7
114,547	-		IAI47_00500	0.64	-0.1
114,547	-		IAI47_00500	0.64	-0.6
114,547	-		IAI47_00500	0.64	-0.4
114,547	-		IAI47_00500	0.64	+0.4
114,550	-		IAI47_00500	0.65	-0.6
114,550	-		IAI47_00500	0.65	-0.7
114,589	+		IAI47_00500	0.66	-2.7
114,589	+		IAI47_00500	0.66	-0.2
114,589	+		IAI47_00500	0.66	+0.7
114,589	+		IAI47_00500	0.66	+0.7
114,589	+		IAI47_00500	0.66	+1.5
114,590	-		IAI47_00500	0.67	-1.1
114,590	-		IAI47_00500	0.67	-2.3
114,614	+		IAI47_00500	0.68	+0.0
114,615	-		IAI47_00500	0.68	+1.5
114,713	+		IAI47_00500	0.72	-1.5
114,713	+		IAI47_00500	0.72	+1.2
114,714	-		IAI47_00500	0.72	+0.7
114,726	-		IAI47_00500	0.73	-2.1
114,831	+		IAI47_00500	0.78	-0.6
114,843	-		IAI47_00500	0.79	+1.5
114,843	-		IAI47_00500	0.79	-2.3
114,843	-		IAI47_00500	0.79	+0.3
114,843	-		IAI47_00500	0.79	-0.3
114,901	+		IAI47_00500	0.81	-0.1
114,901	+		IAI47_00500	0.81	+1.6
114,902	-		IAI47_00500	0.82	-0.1
114,902	-		IAI47_00500	0.82	-1.1
114,928	+		IAI47_00500	0.83	-0.7
114,929	-		IAI47_00500	0.83	-1.6
114,939	+		IAI47_00500	0.83	-0.7
114,939	+		IAI47_00500	0.83	+2.1
114,940	-		IAI47_00500	0.83	+1.7
114,940	-		IAI47_00500	0.83	-1.7
114,940	-		IAI47_00500	0.83	+0.1
114,940	-		IAI47_00500	0.83	-0.9
114,940	-		IAI47_00500	0.83	+1.3
114,940	-		IAI47_00500	0.83	-0.5
114,940	-		IAI47_00500	0.83	-0.1
114,947	-		IAI47_00500	0.84	-0.7
115,069	+		IAI47_00500	0.90	+0.3
115,069	+		IAI47_00500	0.90	-1.4
115,069	+		IAI47_00500	0.90	+3.6
115,070	-		IAI47_00500	0.90	-0.3
115,094	+				-0.1
115,094	+				-1.1
115,094	+				+0.5
115,094	+				-0.7
115,094	+				-0.4
115,095	-				+0.0
115,095	-				+2.9
115,095	-				-1.4
115,095	-				+0.6
115,095	-				-0.7
115,095	-				-1.6
115,095	-				+0.7
115,108	+				-0.7
115,129	+				-1.1
115,129	+				+0.1
115,129	+				+0.1
115,129	+				-0.7
115,129	+				+1.3
115,130	-				+0.3
115,130	-				+0.3
115,130	-				+0.4
115,130	-				-0.9
115,130	-				-1.4
115,130	-				-0.3
115,130	-				+0.6
115,130	-				-1.0
115,134	+				+0.5
115,134	+				+1.1
115,134	+				+1.9
115,134	+				-0.3
115,134	+				-0.9
115,134	+				+1.2
115,134	+				-1.1
115,134	+				+0.6
115,134	+				+0.9
115,134	+				-0.3
115,134	+				+0.3
115,134	+				+1.2
115,134	+				-2.6
115,135	-				+1.1
115,135	-				-0.7
115,135	-				+1.1
115,135	-				+0.3
115,135	-				-1.4
115,135	-				+0.3
115,135	-				+0.4
115,135	-				-0.4
115,135	-				-0.1
115,135	-				-0.6
115,135	-				+0.5
115,135	-				+0.7
115,135	-				-0.4
115,135	-				+1.9
115,135	-				+0.5
115,155	+				-1.7
115,155	+				+0.1
115,249	+				+0.4
115,249	+				-0.8
115,249	+				+0.2
115,249	+				+0.9
115,250	-				-0.8
115,250	-				+0.6
115,250	-				-0.4
115,293	+				-2.4
115,369	+		IAI47_00505	0.12	-1.4
115,369	+		IAI47_00505	0.12	-0.1
115,369	+		IAI47_00505	0.12	-1.1
115,369	+		IAI47_00505	0.12	-0.9
115,370	-		IAI47_00505	0.13	-0.2
115,457	+		IAI47_00505	0.25	+0.1
115,469	+		IAI47_00505	0.27	+0.6
115,469	+		IAI47_00505	0.27	-0.1
115,469	+		IAI47_00505	0.27	+0.6
115,469	+		IAI47_00505	0.27	+0.8
115,470	-		IAI47_00505	0.27	-0.9
115,505	+		IAI47_00505	0.32	-1.7
115,505	+		IAI47_00505	0.32	+0.9
115,505	+		IAI47_00505	0.32	-1.0
115,506	-		IAI47_00505	0.32	-0.7
115,506	-		IAI47_00505	0.32	-1.1
115,512	+		IAI47_00505	0.33	-0.7
115,513	-		IAI47_00505	0.33	-0.9
115,552	-		IAI47_00505	0.39	+0.3
115,650	+		IAI47_00505	0.53	-0.9
115,650	+		IAI47_00505	0.53	+1.3
115,650	+		IAI47_00505	0.53	-0.4
115,650	+		IAI47_00505	0.53	-1.1
115,650	+		IAI47_00505	0.53	-0.8
115,699	+		IAI47_00505	0.60	-0.6
115,699	+		IAI47_00505	0.60	+0.9
115,700	-		IAI47_00505	0.60	+0.0
115,732	+		IAI47_00505	0.64	-0.3
115,732	+		IAI47_00505	0.64	-2.3
115,732	+		IAI47_00505	0.64	+0.3
115,896	+		IAI47_00505	0.88	+0.9
115,896	+		IAI47_00505	0.88	-0.1
115,897	-		IAI47_00505	0.88	-2.8
115,897	-		IAI47_00505	0.88	-0.3
115,897	-		IAI47_00505	0.88	+0.0
115,984	+				+0.9
115,984	+				+0.1
115,984	+				-0.2
115,984	+				+0.9
115,984	+				-0.1
115,984	+				-1.6
115,984	+				-1.7
115,985	-				-0.1
115,985	-				+0.9
115,985	-				+0.2
115,985	-				+2.5
115,985	-				-0.1
115,988	+				-1.7
115,989	-				-0.3
115,989	-				-0.4
115,989	-				+0.4
115,989	-				+0.1
116,042	+				+0.9
116,043	-				-0.5
116,043	-				+1.3
116,043	-				-1.0
116,082	-				+0.1
116,092	+				+0.8
116,092	+				-0.6
116,092	+				+0.2
116,093	-				-0.3
116,168	+				-0.1
116,189	+				+0.3
116,190	-				-0.9
116,238	-		IAI47_00510	0.12	-0.8
116,388	-		IAI47_00510	0.19	+1.3
116,388	-		IAI47_00510	0.19	-2.1
116,388	-		IAI47_00510	0.19	-0.1
116,388	-		IAI47_00510	0.19	-0.2
116,388	-		IAI47_00510	0.19	+0.9
116,388	-		IAI47_00510	0.19	-1.8
116,411	+		IAI47_00510	0.20	+0.2
116,412	-		IAI47_00510	0.20	-0.4
116,926	+		IAI47_00510	0.45	+0.5