Strain Fitness in Pantoea sp. MT58 around IAI47_21470

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
33,634	-		IAI47_21460	0.73	+0.3
33,634	-		IAI47_21460	0.73	-1.3
33,803	+		IAI47_21460	0.89	-1.0
33,803	+		IAI47_21460	0.89	-2.1
33,803	+		IAI47_21460	0.89	-0.8
33,845	+				-1.1
33,845	+				-0.8
33,845	+				-0.8
33,845	+				-0.2
33,845	+				-1.2
33,846	-				-1.2
33,846	-				+1.0
33,882	+				+0.0
33,883	-				-0.5
33,883	-				-1.1
33,883	-				-0.8
33,921	-				+0.5
33,921	-				+0.0
33,921	-				-0.3
33,921	-				+1.0
33,927	+				+0.1
33,928	-				-1.0
33,928	-				-2.0
33,962	+				-0.5
34,044	-				+0.0
34,044	-				-0.3
34,049	+				-0.6
34,049	+				+1.0
34,050	-				+0.0
34,050	-				-0.4
34,051	+				-0.8
34,052	-				+0.0
34,056	+				-0.0
34,057	-				-1.5
34,057	-				+0.3
34,068	+				+2.0
34,071	+				+1.6
34,072	-				-1.0
34,072	-				-0.7
34,076	-				+1.2
34,120	+				+0.9
34,120	+				-0.5
34,175	+		IAI47_21465	0.12	+1.3
34,176	-		IAI47_21465	0.12	+0.5
34,176	-		IAI47_21465	0.12	-1.0
34,176	-		IAI47_21465	0.12	-1.3
34,176	-		IAI47_21465	0.12	-0.3
34,240	+		IAI47_21465	0.26	-0.5
34,240	+		IAI47_21465	0.26	-0.3
34,241	-		IAI47_21465	0.26	+0.8
34,241	-		IAI47_21465	0.26	-1.0
34,241	-		IAI47_21465	0.26	-0.4
34,275	+		IAI47_21465	0.33	-0.5
34,275	+		IAI47_21465	0.33	-1.3
34,282	-		IAI47_21465	0.35	-1.0
34,282	-		IAI47_21465	0.35	+2.0
34,282	-		IAI47_21465	0.35	-0.5
34,283	+		IAI47_21465	0.35	-0.3
34,283	+		IAI47_21465	0.35	-1.0
34,284	-		IAI47_21465	0.35	+1.2
34,284	-		IAI47_21465	0.35	+1.0
34,290	+		IAI47_21465	0.37	-0.5
34,291	-		IAI47_21465	0.37	+2.8
34,318	-		IAI47_21465	0.43	+1.5
34,318	-		IAI47_21465	0.43	-1.7
34,355	+		IAI47_21465	0.50	+1.0
34,359	+		IAI47_21465	0.51	-2.3
34,360	-		IAI47_21465	0.51	+0.2
34,365	+		IAI47_21465	0.53	-0.8
34,366	-		IAI47_21465	0.53	-0.1
34,366	-		IAI47_21465	0.53	-0.5
34,376	+		IAI47_21465	0.55	-1.3
34,377	-		IAI47_21465	0.55	+0.0
34,380	+		IAI47_21465	0.56	-0.3
34,381	-		IAI47_21465	0.56	+0.6
34,391	+		IAI47_21465	0.58	+2.0
34,391	+		IAI47_21465	0.58	-0.1
34,391	+		IAI47_21465	0.58	-0.1
34,391	+		IAI47_21465	0.58	-0.8
34,392	-		IAI47_21465	0.58	+1.8
34,416	-		IAI47_21465	0.63	+0.5
34,416	-		IAI47_21465	0.63	-0.0
34,434	-		IAI47_21465	0.67	+0.4
34,442	+		IAI47_21465	0.69	-0.7
34,442	+		IAI47_21465	0.69	-0.5
34,442	+		IAI47_21465	0.69	-1.0
34,442	+		IAI47_21465	0.69	-0.2
34,443	-		IAI47_21465	0.69	+0.8
34,505	+		IAI47_21465	0.82	+0.4
34,505	+		IAI47_21465	0.82	-1.0
34,505	+		IAI47_21465	0.82	-0.3
34,506	-		IAI47_21465	0.83	-0.5
34,507	+		IAI47_21465	0.83	-0.5
34,507	+		IAI47_21465	0.83	+2.4
34,507	+		IAI47_21465	0.83	-0.3
34,508	-		IAI47_21465	0.83	+0.5
34,508	-		IAI47_21465	0.83	+0.8
34,508	-		IAI47_21465	0.83	-0.5
34,508	-		IAI47_21465	0.83	-1.6
34,508	-		IAI47_21465	0.83	+0.5
34,533	+		IAI47_21465	0.88	-0.8
34,533	+		IAI47_21465	0.88	+0.5
34,533	+		IAI47_21465	0.88	-0.2
34,534	-		IAI47_21465	0.89	-0.2
34,534	-		IAI47_21465	0.89	+0.1
34,534	-		IAI47_21465	0.89	+1.0
34,534	-		IAI47_21465	0.89	-0.1
34,534	-		IAI47_21465	0.89	+1.0
34,550	+				+0.2
34,551	-				-0.4
34,551	-				-0.9
34,592	+				+0.2
34,592	+				+0.5
34,592	+				+0.7
34,593	-				+0.0
34,606	+				+0.2
34,617	+				+0.7
34,617	+				+0.8
34,617	+				+0.0
34,618	-				-0.7
34,618	-				-0.3
34,652	+		IAI47_21470	0.11	+0.3
34,652	+		IAI47_21470	0.11	-2.0
34,653	-		IAI47_21470	0.11	+0.1
34,680	-		IAI47_21470	0.19	-0.8
34,680	-		IAI47_21470	0.19	+0.5
34,680	-		IAI47_21470	0.19	-0.5
34,680	-		IAI47_21470	0.19	+1.0
34,706	+		IAI47_21470	0.27	+1.0
34,706	+		IAI47_21470	0.27	+0.2
34,706	+		IAI47_21470	0.27	-1.1
34,707	-		IAI47_21470	0.28	-1.1
34,707	-		IAI47_21470	0.28	-0.8
34,708	+		IAI47_21470	0.28	+2.3
34,709	-		IAI47_21470	0.28	+0.2
34,709	-		IAI47_21470	0.28	+0.5
34,715	+		IAI47_21470	0.30	+2.5
34,715	+		IAI47_21470	0.30	+1.6
34,715	+		IAI47_21470	0.30	-0.8
34,715	+		IAI47_21470	0.30	-0.2
34,716	-		IAI47_21470	0.30	+1.5
34,757	+		IAI47_21470	0.43	+0.0
34,757	+		IAI47_21470	0.43	+1.5
34,762	+		IAI47_21470	0.44	-1.8
34,762	+		IAI47_21470	0.44	+0.3
34,762	+		IAI47_21470	0.44	+0.2
34,763	-		IAI47_21470	0.45	-2.1
34,763	-		IAI47_21470	0.45	+0.3
34,763	-		IAI47_21470	0.45	+0.0
34,783	+		IAI47_21470	0.51	+0.1
34,783	+		IAI47_21470	0.51	-0.7
34,783	+		IAI47_21470	0.51	+0.5
34,783	+		IAI47_21470	0.51	+1.0
34,783	+		IAI47_21470	0.51	+0.2
34,784	-		IAI47_21470	0.51	-2.5
34,784	-		IAI47_21470	0.51	+1.0
34,784	-		IAI47_21470	0.51	+1.0
34,784	-		IAI47_21470	0.51	+1.0
34,784	-		IAI47_21470	0.51	-1.1
34,784	-		IAI47_21470	0.51	-1.0
34,796	-		IAI47_21470	0.55	-0.3
34,805	-		IAI47_21470	0.57	+0.8
34,825	+		IAI47_21470	0.63	+2.6
34,878	+		IAI47_21470	0.79	-1.3
34,879	-		IAI47_21470	0.80	-0.5
34,893	-		IAI47_21470	0.84	+1.0
34,893	-		IAI47_21470	0.84	+0.3
34,897	+		IAI47_21470	0.85	+1.5
34,932	+				+0.6
34,932	+				+1.4
34,932	+				+0.3
34,932	+				-0.5
34,932	+				+1.2
34,932	+				+0.3
34,933	-				+1.0
34,933	-				+0.4
34,933	-				+0.8
34,933	-				+0.0
34,933	-				+0.7
34,933	-				+0.4
34,933	-				+0.3
34,933	-				+0.5
34,934	+				+2.8
34,935	-				-2.1
34,945	+				-0.5
34,945	+				+0.0
34,945	+				+0.0
34,945	+				-0.5
34,945	+				+0.6
34,946	-				-0.4
34,946	-				+2.0
34,946	-				-1.1
34,946	-				+0.0
34,946	-				+0.0
34,946	-				+0.3
34,946	-				+0.3
34,946	-				-0.2
34,946	-				+1.3
34,958	+				-0.2
34,959	-				+0.4
34,959	-				-1.0
34,959	-				-0.5
34,995	+				+0.8
34,995	+				-0.8
34,995	+				-0.4
34,995	+				+0.5
34,996	-				-0.1
34,996	-				+0.7
34,996	-				-2.3
34,996	-				-0.3
34,996	-				+0.3
34,996	-				-0.1
34,998	+				+0.0
34,998	+				+0.8
34,998	+				+0.0
34,999	-				+0.5
34,999	-				+0.1
35,012	+		IAI47_21475	0.11	+1.3
35,033	+		IAI47_21475	0.15	+1.0
35,034	-		IAI47_21475	0.16	+0.4
35,072	+		IAI47_21475	0.23	+1.0
35,073	-		IAI47_21475	0.24	+0.0
35,086	-		IAI47_21475	0.26	+0.3
35,098	-		IAI47_21475	0.29	+1.5
35,098	-		IAI47_21475	0.29	+0.5
35,104	+		IAI47_21475	0.30	-0.5
35,115	+		IAI47_21475	0.32	+0.1
35,115	+		IAI47_21475	0.32	+1.2
35,116	-		IAI47_21475	0.32	+0.0
35,116	-		IAI47_21475	0.32	+2.0
35,116	-		IAI47_21475	0.32	+0.5
35,134	-		IAI47_21475	0.36	-0.4
35,137	+		IAI47_21475	0.37	+0.6
35,137	+		IAI47_21475	0.37	+0.0
35,138	-		IAI47_21475	0.37	-0.1
35,138	-		IAI47_21475	0.37	+1.9
35,138	-		IAI47_21475	0.37	-0.2
35,138	-		IAI47_21475	0.37	+0.9
35,143	+		IAI47_21475	0.38	-1.0
35,144	-		IAI47_21475	0.38	-1.0
35,147	+		IAI47_21475	0.39	-1.0
35,148	-		IAI47_21475	0.39	-0.1
35,169	-		IAI47_21475	0.43	-0.1
35,169	-		IAI47_21475	0.43	+0.0
35,172	+		IAI47_21475	0.44	+2.5
35,172	+		IAI47_21475	0.44	+0.3
35,173	-		IAI47_21475	0.44	+1.8
35,188	-		IAI47_21475	0.47	-0.5
35,203	+		IAI47_21475	0.50	-1.5
35,203	+		IAI47_21475	0.50	-0.1
35,203	+		IAI47_21475	0.50	-0.7
35,204	-		IAI47_21475	0.50	-1.3
35,271	+		IAI47_21475	0.64	+1.5
35,271	+		IAI47_21475	0.64	+1.0
35,317	-		IAI47_21475	0.73	-0.3
35,317	-		IAI47_21475	0.73	+2.0
35,322	+		IAI47_21475	0.74	+0.3
35,322	+		IAI47_21475	0.74	-0.4
35,332	+		IAI47_21475	0.76	-0.5
35,332	+		IAI47_21475	0.76	-0.6
35,332	+		IAI47_21475	0.76	+1.8
35,332	+		IAI47_21475	0.76	-0.8
35,333	-		IAI47_21475	0.76	-1.4
35,333	-		IAI47_21475	0.76	-0.8
35,333	-		IAI47_21475	0.76	-0.4
35,354	-		IAI47_21475	0.81	-1.3
35,359	+		IAI47_21475	0.82	-0.4
35,359	+		IAI47_21475	0.82	-1.1
35,362	-		IAI47_21475	0.82	+1.0
35,362	-		IAI47_21475	0.82	-2.3
35,362	-		IAI47_21475	0.82	+0.5
35,418	-				-0.5
35,428	+				+0.8
35,429	-				-0.2
35,429	-				+0.9
35,432	+				-0.5
35,432	+				-0.3
35,432	+				-0.9
35,433	-				-0.5
35,433	-				-0.5
35,433	-				+2.6
35,433	-				+1.6
35,487	-				+0.7
35,563	-				+0.0
35,584	+				+0.2
35,584	+				+0.0
35,585	-				-1.5
35,585	-				+1.3
35,585	-				+0.2
35,661	+				+0.0
35,661	+				-0.2
35,661	+				+0.8
35,661	+				+0.0
35,662	-				-1.0
35,662	-				-0.3
35,662	-				+0.7
35,843	+				+0.9
35,843	+				+1.0
35,848	+				+1.6
35,848	+				-0.1
35,848	+				+0.2
35,849	-				-0.5
35,856	+				+0.5
35,866	+				+2.0
35,867	-				-0.5
35,895	+				+0.7
35,895	+				+0.9
35,896	-				-0.2
35,934	+				+0.3
35,935	-				-1.2
35,935	-				+1.4
35,943	-				+1.0
35,943	-				-1.0