Strain Fitness in Pantoea sp. MT58 around IAI47_21460

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
31,911	+		IAI47_21455	0.55	-0.5
31,911	+		IAI47_21455	0.55	-1.3
31,911	+		IAI47_21455	0.55	+0.8
31,911	+		IAI47_21455	0.55	+1.2
31,912	-		IAI47_21455	0.55	+0.5
31,912	-		IAI47_21455	0.55	-0.5
31,912	-		IAI47_21455	0.55	-1.1
32,022	+		IAI47_21455	0.61	+2.6
32,023	-		IAI47_21455	0.61	-0.5
32,023	-		IAI47_21455	0.61	+0.8
32,023	-		IAI47_21455	0.61	+0.4
32,062	+		IAI47_21455	0.63	-0.5
32,083	+		IAI47_21455	0.64	+0.0
32,083	+		IAI47_21455	0.64	+0.4
32,083	+		IAI47_21455	0.64	+0.1
32,084	-		IAI47_21455	0.64	+1.5
32,117	+		IAI47_21455	0.66	+1.0
32,124	+		IAI47_21455	0.66	-0.5
32,124	+		IAI47_21455	0.66	+1.4
32,124	+		IAI47_21455	0.66	-1.1
32,125	-		IAI47_21455	0.66	+0.0
32,125	-		IAI47_21455	0.66	+1.0
32,151	+		IAI47_21455	0.68	+0.3
32,152	-		IAI47_21455	0.68	-0.4
32,158	+		IAI47_21455	0.68	-0.1
32,158	+		IAI47_21455	0.68	-0.3
32,158	+		IAI47_21455	0.68	+2.0
32,158	+		IAI47_21455	0.68	+1.0
32,159	-		IAI47_21455	0.68	+0.8
32,159	-		IAI47_21455	0.68	+0.8
32,159	-		IAI47_21455	0.68	+1.0
32,159	-		IAI47_21455	0.68	+0.5
32,159	-		IAI47_21455	0.68	-0.8
32,259	+		IAI47_21455	0.73	+1.6
32,259	+		IAI47_21455	0.73	+1.0
32,259	+		IAI47_21455	0.73	+0.3
32,260	-		IAI47_21455	0.73	-0.5
32,260	-		IAI47_21455	0.73	-0.9
32,262	+		IAI47_21455	0.73	-0.4
32,262	+		IAI47_21455	0.73	+0.2
32,263	-		IAI47_21455	0.73	+0.5
32,263	-		IAI47_21455	0.73	-1.8
32,358	+		IAI47_21455	0.78	-2.0
32,359	-		IAI47_21455	0.78	-0.5
32,376	+		IAI47_21455	0.79	-1.4
32,377	-		IAI47_21455	0.79	+0.7
32,377	-		IAI47_21455	0.79	+0.8
32,377	-		IAI47_21455	0.79	+0.0
32,377	-		IAI47_21455	0.79	+1.5
32,418	-		IAI47_21455	0.81	+0.0
32,524	-		IAI47_21455	0.86	+1.4
32,524	-		IAI47_21455	0.86	-1.0
32,614	-				+0.2
32,614	-				-1.1
32,629	-				-0.4
32,756	+				+0.2
32,756	+				+1.7
32,781	+				+0.7
32,793	+				+0.6
32,794	-				+1.0
32,801	+				+1.5
32,802	-				+0.0
32,823	+				-0.3
32,823	+				-0.3
32,823	+				+0.6
32,824	-				-2.0
32,860	+				-0.6
32,860	+				+1.0
32,860	+				-0.5
32,860	+				+0.0
32,860	+				-0.4
32,861	-				-0.4
32,861	-				+0.6
32,861	-				+0.2
32,890	+				+0.6
32,890	+				-0.7
32,890	+				-0.8
32,890	+				-2.7
32,891	-				-0.3
32,891	-				-1.1
32,891	-				-0.8
32,891	-				+0.0
32,891	-				+0.5
32,903	+				-1.8
32,903	+				-1.0
32,910	+				-0.2
32,910	+				+1.9
32,911	-				-0.5
32,946	+				+1.0
32,946	+				-1.5
32,946	+				+0.0
32,946	+				-1.9
32,946	+				+0.0
32,946	+				-0.2
32,947	-				+1.0
32,947	-				-0.2
32,947	-				-2.3
32,947	-				+0.3
32,952	+				-1.0
32,952	+				-1.0
32,952	+				+0.7
32,952	+				+0.6
32,952	+				-0.5
32,952	+				-1.1
32,952	+				-1.2
32,953	-				-1.1
32,953	-				+1.0
32,953	-				+0.0
32,953	-				+0.5
32,953	-				-2.0
33,000	+		IAI47_21460	0.10	+0.7
33,000	+		IAI47_21460	0.10	+0.0
33,000	+		IAI47_21460	0.10	+0.0
33,001	-		IAI47_21460	0.10	+1.0
33,085	+		IAI47_21460	0.19	+0.0
33,085	+		IAI47_21460	0.19	+1.0
33,085	+		IAI47_21460	0.19	-1.1
33,085	+		IAI47_21460	0.19	+0.0
33,085	+		IAI47_21460	0.19	+0.0
33,085	+		IAI47_21460	0.19	+0.0
33,085	+		IAI47_21460	0.19	-0.5
33,086	-		IAI47_21460	0.19	+0.7
33,086	-		IAI47_21460	0.19	+0.5
33,086	-		IAI47_21460	0.19	-0.5
33,126	-		IAI47_21460	0.23	+0.0
33,126	-		IAI47_21460	0.23	+0.5
33,151	+		IAI47_21460	0.25	-1.3
33,152	-		IAI47_21460	0.25	-0.5
33,197	+		IAI47_21460	0.30	-0.0
33,197	+		IAI47_21460	0.30	+0.0
33,197	+		IAI47_21460	0.30	+0.4
33,197	+		IAI47_21460	0.30	-0.5
33,198	-		IAI47_21460	0.30	+0.6
33,198	-		IAI47_21460	0.30	-0.8
33,198	-		IAI47_21460	0.30	-0.5
33,198	-		IAI47_21460	0.30	+0.1
33,200	+		IAI47_21460	0.30	-0.5
33,215	+		IAI47_21460	0.31	-0.5
33,215	+		IAI47_21460	0.31	-0.8
33,322	+		IAI47_21460	0.42	+0.7
33,322	+		IAI47_21460	0.42	-1.5
33,322	+		IAI47_21460	0.42	-1.0
33,322	+		IAI47_21460	0.42	-0.4
33,322	+		IAI47_21460	0.42	+0.0
33,322	+		IAI47_21460	0.42	+1.0
33,323	-		IAI47_21460	0.42	-1.3
33,323	-		IAI47_21460	0.42	+0.0
33,323	-		IAI47_21460	0.42	+1.2
33,323	-		IAI47_21460	0.42	+0.8
33,323	-		IAI47_21460	0.42	+0.0
33,323	-		IAI47_21460	0.42	-0.2
33,353	+		IAI47_21460	0.45	-0.5
33,353	+		IAI47_21460	0.45	+0.5
33,353	+		IAI47_21460	0.45	+1.4
33,354	-		IAI47_21460	0.45	+1.0
33,383	+		IAI47_21460	0.48	-0.8
33,383	+		IAI47_21460	0.48	-0.3
33,384	-		IAI47_21460	0.48	+0.0
33,384	-		IAI47_21460	0.48	+1.5
33,384	-		IAI47_21460	0.48	+0.9
33,437	+		IAI47_21460	0.53	-0.4
33,437	+		IAI47_21460	0.53	+1.0
33,437	+		IAI47_21460	0.53	-1.4
33,437	+		IAI47_21460	0.53	+1.5
33,437	+		IAI47_21460	0.53	+0.4
33,437	+		IAI47_21460	0.53	-1.0
33,437	+		IAI47_21460	0.53	+1.0
33,437	+		IAI47_21460	0.53	+0.0
33,438	-		IAI47_21460	0.53	-0.3
33,438	-		IAI47_21460	0.53	-1.0
33,438	-		IAI47_21460	0.53	-0.2
33,438	-		IAI47_21460	0.53	-0.5
33,500	+		IAI47_21460	0.59	+0.3
33,500	+		IAI47_21460	0.59	-0.4
33,500	+		IAI47_21460	0.59	-0.5
33,500	+		IAI47_21460	0.59	+0.3
33,500	+		IAI47_21460	0.59	-0.5
33,500	+		IAI47_21460	0.59	-0.8
33,500	+		IAI47_21460	0.59	-0.2
33,500	+		IAI47_21460	0.59	-0.7
33,501	-		IAI47_21460	0.60	-0.8
33,501	-		IAI47_21460	0.60	-1.0
33,634	-		IAI47_21460	0.73	+0.3
33,634	-		IAI47_21460	0.73	-1.3
33,803	+		IAI47_21460	0.89	-1.0
33,803	+		IAI47_21460	0.89	-2.1
33,803	+		IAI47_21460	0.89	-0.8
33,845	+				-1.1
33,845	+				-0.8
33,845	+				-0.8
33,845	+				-0.2
33,845	+				-1.2
33,846	-				-1.2
33,846	-				+1.0
33,882	+				+0.0
33,883	-				-0.5
33,883	-				-1.1
33,883	-				-0.8
33,921	-				+0.5
33,921	-				+0.0
33,921	-				-0.3
33,921	-				+1.0
33,927	+				+0.1
33,928	-				-1.0
33,928	-				-2.0
33,962	+				-0.5
34,044	-				+0.0
34,044	-				-0.3
34,049	+				-0.6
34,049	+				+1.0
34,050	-				+0.0
34,050	-				-0.4
34,051	+				-0.8
34,052	-				+0.0
34,056	+				-0.0
34,057	-				-1.5
34,057	-				+0.3
34,068	+				+2.0
34,071	+				+1.6
34,072	-				-1.0
34,072	-				-0.7
34,076	-				+1.2
34,120	+				+0.9
34,120	+				-0.5
34,175	+		IAI47_21465	0.12	+1.3
34,176	-		IAI47_21465	0.12	+0.5
34,176	-		IAI47_21465	0.12	-1.0
34,176	-		IAI47_21465	0.12	-1.3
34,176	-		IAI47_21465	0.12	-0.3
34,240	+		IAI47_21465	0.26	-0.5
34,240	+		IAI47_21465	0.26	-0.3
34,241	-		IAI47_21465	0.26	+0.8
34,241	-		IAI47_21465	0.26	-1.0
34,241	-		IAI47_21465	0.26	-0.4
34,275	+		IAI47_21465	0.33	-0.5
34,275	+		IAI47_21465	0.33	-1.3
34,282	-		IAI47_21465	0.35	-1.0
34,282	-		IAI47_21465	0.35	+2.0
34,282	-		IAI47_21465	0.35	-0.5
34,283	+		IAI47_21465	0.35	-0.3
34,283	+		IAI47_21465	0.35	-1.0
34,284	-		IAI47_21465	0.35	+1.2
34,284	-		IAI47_21465	0.35	+1.0
34,290	+		IAI47_21465	0.37	-0.5
34,291	-		IAI47_21465	0.37	+2.8
34,318	-		IAI47_21465	0.43	+1.5
34,318	-		IAI47_21465	0.43	-1.7
34,355	+		IAI47_21465	0.50	+1.0
34,359	+		IAI47_21465	0.51	-2.3
34,360	-		IAI47_21465	0.51	+0.2
34,365	+		IAI47_21465	0.53	-0.8
34,366	-		IAI47_21465	0.53	-0.1
34,366	-		IAI47_21465	0.53	-0.5
34,376	+		IAI47_21465	0.55	-1.3
34,377	-		IAI47_21465	0.55	+0.0
34,380	+		IAI47_21465	0.56	-0.3
34,381	-		IAI47_21465	0.56	+0.6
34,391	+		IAI47_21465	0.58	+2.0
34,391	+		IAI47_21465	0.58	-0.1
34,391	+		IAI47_21465	0.58	-0.1
34,391	+		IAI47_21465	0.58	-0.8
34,392	-		IAI47_21465	0.58	+1.8
34,416	-		IAI47_21465	0.63	+0.5
34,416	-		IAI47_21465	0.63	-0.0
34,434	-		IAI47_21465	0.67	+0.4
34,442	+		IAI47_21465	0.69	-0.7
34,442	+		IAI47_21465	0.69	-0.5
34,442	+		IAI47_21465	0.69	-1.0
34,442	+		IAI47_21465	0.69	-0.2
34,443	-		IAI47_21465	0.69	+0.8
34,505	+		IAI47_21465	0.82	+0.4
34,505	+		IAI47_21465	0.82	-1.0
34,505	+		IAI47_21465	0.82	-0.3
34,506	-		IAI47_21465	0.83	-0.5
34,507	+		IAI47_21465	0.83	-0.5
34,507	+		IAI47_21465	0.83	+2.4
34,507	+		IAI47_21465	0.83	-0.3
34,508	-		IAI47_21465	0.83	+0.5
34,508	-		IAI47_21465	0.83	+0.8
34,508	-		IAI47_21465	0.83	-0.5
34,508	-		IAI47_21465	0.83	-1.6
34,508	-		IAI47_21465	0.83	+0.5
34,533	+		IAI47_21465	0.88	-0.8
34,533	+		IAI47_21465	0.88	+0.5
34,533	+		IAI47_21465	0.88	-0.2
34,534	-		IAI47_21465	0.89	-0.2
34,534	-		IAI47_21465	0.89	+0.1
34,534	-		IAI47_21465	0.89	+1.0
34,534	-		IAI47_21465	0.89	-0.1
34,534	-		IAI47_21465	0.89	+1.0
34,550	+				+0.2
34,551	-				-0.4
34,551	-				-0.9
34,592	+				+0.2
34,592	+				+0.5
34,592	+				+0.7
34,593	-				+0.0
34,606	+				+0.2
34,617	+				+0.7
34,617	+				+0.8
34,617	+				+0.0
34,618	-				-0.7
34,618	-				-0.3
34,652	+		IAI47_21470	0.11	+0.3
34,652	+		IAI47_21470	0.11	-2.0
34,653	-		IAI47_21470	0.11	+0.1
34,680	-		IAI47_21470	0.19	-0.8
34,680	-		IAI47_21470	0.19	+0.5
34,680	-		IAI47_21470	0.19	-0.5
34,680	-		IAI47_21470	0.19	+1.0
34,706	+		IAI47_21470	0.27	+1.0
34,706	+		IAI47_21470	0.27	+0.2
34,706	+		IAI47_21470	0.27	-1.1
34,707	-		IAI47_21470	0.28	-1.1
34,707	-		IAI47_21470	0.28	-0.8
34,708	+		IAI47_21470	0.28	+2.3
34,709	-		IAI47_21470	0.28	+0.2
34,709	-		IAI47_21470	0.28	+0.5
34,715	+		IAI47_21470	0.30	+2.5
34,715	+		IAI47_21470	0.30	+1.6
34,715	+		IAI47_21470	0.30	-0.8
34,715	+		IAI47_21470	0.30	-0.2
34,716	-		IAI47_21470	0.30	+1.5
34,757	+		IAI47_21470	0.43	+0.0
34,757	+		IAI47_21470	0.43	+1.5
34,762	+		IAI47_21470	0.44	-1.8
34,762	+		IAI47_21470	0.44	+0.3
34,762	+		IAI47_21470	0.44	+0.2
34,763	-		IAI47_21470	0.45	-2.1
34,763	-		IAI47_21470	0.45	+0.3
34,763	-		IAI47_21470	0.45	+0.0
34,783	+		IAI47_21470	0.51	+0.1
34,783	+		IAI47_21470	0.51	-0.7
34,783	+		IAI47_21470	0.51	+0.5
34,783	+		IAI47_21470	0.51	+1.0
34,783	+		IAI47_21470	0.51	+0.2
34,784	-		IAI47_21470	0.51	-2.5
34,784	-		IAI47_21470	0.51	+1.0
34,784	-		IAI47_21470	0.51	+1.0
34,784	-		IAI47_21470	0.51	+1.0
34,784	-		IAI47_21470	0.51	-1.1
34,784	-		IAI47_21470	0.51	-1.0
34,796	-		IAI47_21470	0.55	-0.3
34,805	-		IAI47_21470	0.57	+0.8
34,825	+		IAI47_21470	0.63	+2.6
34,878	+		IAI47_21470	0.79	-1.3
34,879	-		IAI47_21470	0.80	-0.5
34,893	-		IAI47_21470	0.84	+1.0
34,893	-		IAI47_21470	0.84	+0.3
34,897	+		IAI47_21470	0.85	+1.5