Strain Fitness in Pantoea sp. MT58 around IAI47_16415

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
3,475,006	-		IAI47_16405	0.65	+0.4
3,475,006	-		IAI47_16405	0.65	+0.2
3,475,008	+		IAI47_16405	0.65	+1.8
3,475,009	-		IAI47_16405	0.65	-1.2
3,475,024	-		IAI47_16405	0.67	+1.1
3,475,058	-		IAI47_16405	0.71	-0.1
3,475,112	+		IAI47_16405	0.78	+1.4
3,475,234	+				+1.8
3,475,285	+				+0.0
3,475,286	-				-1.0
3,475,286	-				-0.2
3,475,286	-				+0.4
3,475,295	+				+1.3
3,475,295	+				-0.3
3,475,295	+				-1.3
3,475,295	+				-1.2
3,475,295	+				-0.3
3,475,295	+				-0.3
3,475,295	+				-0.6
3,475,295	+				+0.3
3,475,295	+				-0.4
3,475,296	-				+1.2
3,475,296	-				+1.4
3,475,299	+				-1.0
3,475,299	+				+0.7
3,475,300	-				+0.6
3,475,317	+				-0.4
3,475,317	+				-0.5
3,475,318	-				+1.2
3,475,326	+				-2.0
3,475,327	-				+0.8
3,475,355	-				-1.0
3,475,643	-		IAI47_16410	0.56	+0.2
3,475,645	+		IAI47_16410	0.57	-1.1
3,475,645	+		IAI47_16410	0.57	+0.8
3,475,645	+		IAI47_16410	0.57	+0.0
3,475,645	+		IAI47_16410	0.57	+0.2
3,475,646	-		IAI47_16410	0.57	+0.0
3,475,646	-		IAI47_16410	0.57	-1.0
3,475,646	-		IAI47_16410	0.57	-0.5
3,475,646	-		IAI47_16410	0.57	+0.0
3,475,646	-		IAI47_16410	0.57	+0.6
3,475,709	+		IAI47_16410	0.70	+0.5
3,475,709	+		IAI47_16410	0.70	+0.3
3,475,710	-		IAI47_16410	0.71	-0.3
3,475,844	+				-0.4
3,475,844	+				+0.8
3,475,844	+				+2.0
3,475,844	+				+1.8
3,475,844	+				+0.2
3,475,845	-				+1.4
3,475,845	-				+0.0
3,475,845	-				-0.5
3,475,845	-				-0.0
3,475,845	-				-0.0
3,475,900	-				-0.7
3,475,900	-				+0.6
3,475,937	+				-0.4
3,475,938	-				-0.0
3,475,938	-				-0.2
3,475,952	+				+1.0
3,475,965	+				-1.0
3,475,965	+				-2.3
3,475,966	-				+0.2
3,475,966	-				-2.0
3,476,117	-		IAI47_16415	0.15	-0.3
3,476,138	+		IAI47_16415	0.17	-0.3
3,476,138	+		IAI47_16415	0.17	-0.3
3,476,138	+		IAI47_16415	0.17	+0.6
3,476,138	+		IAI47_16415	0.17	+1.2
3,476,139	-		IAI47_16415	0.18	+0.8
3,476,139	-		IAI47_16415	0.18	-0.7
3,476,139	-		IAI47_16415	0.18	-1.4
3,476,139	-		IAI47_16415	0.18	-0.8
3,476,139	-		IAI47_16415	0.18	+0.8
3,476,253	+		IAI47_16415	0.29	-1.2
3,476,253	+		IAI47_16415	0.29	-0.1
3,476,253	+		IAI47_16415	0.29	-0.4
3,476,253	+		IAI47_16415	0.29	+0.8
3,476,253	+		IAI47_16415	0.29	-0.5
3,476,253	+		IAI47_16415	0.29	+0.8
3,476,253	+		IAI47_16415	0.29	-0.1
3,476,254	-		IAI47_16415	0.29	+1.4
3,476,254	-		IAI47_16415	0.29	+3.4
3,476,254	-		IAI47_16415	0.29	-0.4
3,476,314	+		IAI47_16415	0.35	+2.9
3,476,314	+		IAI47_16415	0.35	-1.5
3,476,314	+		IAI47_16415	0.35	-1.2
3,476,314	+		IAI47_16415	0.35	+1.8
3,476,314	+		IAI47_16415	0.35	+0.2
3,476,314	+		IAI47_16415	0.35	+0.8
3,476,315	-		IAI47_16415	0.35	-0.3
3,476,315	-		IAI47_16415	0.35	-0.1
3,476,315	-		IAI47_16415	0.35	-0.6
3,476,315	-		IAI47_16415	0.35	-0.8
3,476,315	-		IAI47_16415	0.35	+0.4
3,476,315	-		IAI47_16415	0.35	-1.7
3,476,399	+		IAI47_16415	0.44	-1.7
3,476,399	+		IAI47_16415	0.44	-0.7
3,476,399	+		IAI47_16415	0.44	+1.0
3,476,399	+		IAI47_16415	0.44	+0.8
3,476,399	+		IAI47_16415	0.44	+0.8
3,476,400	-		IAI47_16415	0.44	+0.5
3,476,400	-		IAI47_16415	0.44	+1.0
3,476,400	-		IAI47_16415	0.44	+0.8
3,476,400	-		IAI47_16415	0.44	-2.0
3,476,446	+		IAI47_16415	0.48	+0.8
3,476,446	+		IAI47_16415	0.48	+1.5
3,476,447	-		IAI47_16415	0.48	-0.0
3,476,447	-		IAI47_16415	0.48	-0.1
3,476,447	-		IAI47_16415	0.48	-0.2
3,476,447	-		IAI47_16415	0.48	+0.8
3,476,447	-		IAI47_16415	0.48	+0.4
3,476,447	-		IAI47_16415	0.48	-1.2
3,476,448	+		IAI47_16415	0.49	-0.2
3,476,448	+		IAI47_16415	0.49	+0.0
3,476,448	+		IAI47_16415	0.49	-0.5
3,476,448	+		IAI47_16415	0.49	+0.9
3,476,448	+		IAI47_16415	0.49	+0.3
3,476,448	+		IAI47_16415	0.49	+0.0
3,476,448	+		IAI47_16415	0.49	+0.2
3,476,448	+		IAI47_16415	0.49	+1.0
3,476,449	-		IAI47_16415	0.49	-0.4
3,476,449	-		IAI47_16415	0.49	-1.2
3,476,449	-		IAI47_16415	0.49	-1.8
3,476,449	-		IAI47_16415	0.49	-0.2
3,476,449	-		IAI47_16415	0.49	-0.8
3,476,461	+		IAI47_16415	0.50	-0.2
3,476,461	+		IAI47_16415	0.50	-0.4
3,476,462	-		IAI47_16415	0.50	-0.0
3,476,462	-		IAI47_16415	0.50	-0.5
3,476,462	-		IAI47_16415	0.50	-0.7
3,476,567	-		IAI47_16415	0.61	+1.5
3,476,567	-		IAI47_16415	0.61	-0.3
3,476,567	-		IAI47_16415	0.61	+0.5
3,476,695	+		IAI47_16415	0.73	+0.2
3,476,696	-		IAI47_16415	0.73	+0.5
3,476,732	+		IAI47_16415	0.77	-0.4
3,476,824	+		IAI47_16415	0.86	-1.1
3,476,824	+		IAI47_16415	0.86	+1.9
3,476,824	+		IAI47_16415	0.86	-0.3
3,476,824	+		IAI47_16415	0.86	+0.8
3,476,825	-		IAI47_16415	0.86	-0.4
3,476,825	-		IAI47_16415	0.86	-0.3
3,476,825	-		IAI47_16415	0.86	-0.0
3,476,825	-		IAI47_16415	0.86	+1.2
3,476,825	-		IAI47_16415	0.86	+1.8
3,476,839	+		IAI47_16415	0.88	+0.6
3,476,839	+		IAI47_16415	0.88	+0.8
3,476,846	+		IAI47_16415	0.89	+0.9
3,476,847	-		IAI47_16415	0.89	+2.1
3,476,847	-		IAI47_16415	0.89	-0.2
3,476,847	-		IAI47_16415	0.89	-0.1
3,476,873	+				-0.6
3,476,873	+				+0.3
3,476,874	-				+0.9
3,476,874	-				-1.8
3,476,874	-				+0.7
3,476,874	-				+0.7
3,476,944	+				+0.6
3,476,945	-				+1.8
3,476,945	-				+0.5
3,476,945	-				-0.5
3,476,959	+				+0.5
3,476,960	-				+0.4
3,476,965	+				+0.8
3,476,965	+				+0.8
3,476,965	+				-0.8
3,476,966	-				-1.5
3,476,972	+				-0.5
3,476,972	+				+1.1
3,476,972	+				+1.2
3,476,972	+				+0.8
3,476,973	-				+0.8
3,476,973	-				+0.4
3,476,973	-				+0.0
3,477,020	+				-2.7
3,477,020	+				-2.8
3,477,020	+				-1.9
3,477,021	-				-3.4
3,477,021	-				-4.4
3,477,118	+		IAI47_16420	0.14	-4.0
3,477,119	-		IAI47_16420	0.14	-3.9
3,477,157	-		IAI47_16420	0.18	-3.0
3,477,241	-		IAI47_16420	0.26	-3.1
3,477,247	-		IAI47_16420	0.27	-2.0
3,477,247	-		IAI47_16420	0.27	-1.2
3,477,247	-		IAI47_16420	0.27	-4.5
3,477,282	+		IAI47_16420	0.30	-2.5
3,477,282	+		IAI47_16420	0.30	-2.3
3,477,282	+		IAI47_16420	0.30	-2.4
3,477,283	-		IAI47_16420	0.30	-1.3
3,477,283	-		IAI47_16420	0.30	-3.0
3,477,299	+		IAI47_16420	0.32	-1.5
3,477,300	-		IAI47_16420	0.32	-2.2
3,477,317	+		IAI47_16420	0.34	-2.2
3,477,317	+		IAI47_16420	0.34	-2.5
3,477,318	-		IAI47_16420	0.34	-2.9
3,477,318	-		IAI47_16420	0.34	-3.5
3,477,318	-		IAI47_16420	0.34	-2.8
3,477,318	-		IAI47_16420	0.34	-3.9
3,477,411	+		IAI47_16420	0.43	-2.9
3,477,412	-		IAI47_16420	0.43	-2.7
3,477,412	-		IAI47_16420	0.43	-3.7
3,477,412	-		IAI47_16420	0.43	-1.7
3,477,429	+		IAI47_16420	0.45	-3.7
3,477,430	-		IAI47_16420	0.45	-2.7
3,477,457	+		IAI47_16420	0.48	-3.7
3,477,457	+		IAI47_16420	0.48	-0.4
3,477,458	-		IAI47_16420	0.48	-4.0
3,477,458	-		IAI47_16420	0.48	-1.5
3,477,472	+		IAI47_16420	0.49	-2.2
3,477,472	+		IAI47_16420	0.49	-2.5
3,477,513	+		IAI47_16420	0.53	-2.7
3,477,513	+		IAI47_16420	0.53	-3.7
3,477,579	-		IAI47_16420	0.59	-1.2
3,477,584	+		IAI47_16420	0.60	-1.8
3,477,584	+		IAI47_16420	0.60	-3.5
3,477,584	+		IAI47_16420	0.60	-3.5
3,477,584	+		IAI47_16420	0.60	-1.5
3,477,584	+		IAI47_16420	0.60	-3.5
3,477,584	+		IAI47_16420	0.60	-2.6
3,477,584	+		IAI47_16420	0.60	-4.0
3,477,584	+		IAI47_16420	0.60	-2.7
3,477,585	-		IAI47_16420	0.60	+1.8
3,477,585	-		IAI47_16420	0.60	-2.1
3,477,585	-		IAI47_16420	0.60	-4.8
3,477,585	-		IAI47_16420	0.60	-2.6
3,477,585	-		IAI47_16420	0.60	-3.7
3,477,585	-		IAI47_16420	0.60	-2.4
3,477,585	-		IAI47_16420	0.60	-1.8
3,477,585	-		IAI47_16420	0.60	-3.2
3,477,608	+		IAI47_16420	0.62	-3.3
3,477,608	+		IAI47_16420	0.62	-1.5
3,477,608	+		IAI47_16420	0.62	-4.7
3,477,608	+		IAI47_16420	0.62	-0.8
3,477,633	+		IAI47_16420	0.65	-4.3
3,477,696	+		IAI47_16420	0.71	-2.5
3,477,696	+		IAI47_16420	0.71	-1.4
3,477,696	+		IAI47_16420	0.71	-3.8
3,477,697	-		IAI47_16420	0.71	-4.7
3,477,697	-		IAI47_16420	0.71	-2.7
3,477,697	-		IAI47_16420	0.71	-4.8
3,477,697	-		IAI47_16420	0.71	+0.8
3,477,765	+		IAI47_16420	0.78	-3.4
3,477,766	-		IAI47_16420	0.78	-1.9
3,477,768	+		IAI47_16420	0.78	-2.9
3,477,768	+		IAI47_16420	0.78	-3.9
3,477,768	+		IAI47_16420	0.78	-1.0
3,477,769	-		IAI47_16420	0.78	-1.2
3,477,769	-		IAI47_16420	0.78	-4.2
3,477,769	-		IAI47_16420	0.78	-3.4
3,477,769	-		IAI47_16420	0.78	-2.3
3,477,795	+		IAI47_16420	0.81	-2.9
3,477,795	+		IAI47_16420	0.81	-2.0
3,477,795	+		IAI47_16420	0.81	-2.8
3,477,795	+		IAI47_16420	0.81	-3.0
3,477,795	+		IAI47_16420	0.81	-2.7
3,477,795	+		IAI47_16420	0.81	-1.4
3,477,795	+		IAI47_16420	0.81	-3.8
3,477,795	+		IAI47_16420	0.81	-3.2
3,477,795	+		IAI47_16420	0.81	-1.2
3,477,795	+		IAI47_16420	0.81	-3.6
3,477,796	-		IAI47_16420	0.81	-2.0
3,477,796	-		IAI47_16420	0.81	-2.2
3,477,798	+		IAI47_16420	0.81	-3.2
3,477,849	+		IAI47_16420	0.86	-2.7
3,477,850	-		IAI47_16420	0.86	-2.4
3,477,863	-		IAI47_16420	0.87	-1.2
3,477,906	+				-3.5
3,477,906	+				-3.0
3,477,906	+				-2.5
3,477,914	+				-2.4
3,477,914	+				-4.8
3,477,914	+				-3.5
3,477,914	+				-3.0
3,477,914	+				-3.2
3,477,914	+				-3.1
3,477,914	+				-4.4
3,477,914	+				-1.8
3,477,914	+				-2.3
3,477,914	+				-1.7
3,477,914	+				-2.9
3,477,915	-				-3.2
3,477,915	-				-4.2
3,477,915	-				-1.8
3,477,915	-				-3.5
3,477,915	-				-3.3
3,477,915	-				-1.8
3,477,915	-				-4.5
3,477,915	-				-3.2
3,477,915	-				-2.2
3,477,915	-				-0.8