Strain Fitness in Pantoea sp. MT58 around IAI47_14890

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
3,140,573	-		IAI47_14880	0.33	-0.3
3,140,573	-		IAI47_14880	0.33	+0.2
3,140,651	+		IAI47_14880	0.45	+0.1
3,140,652	-		IAI47_14880	0.45	-0.8
3,140,652	-		IAI47_14880	0.45	+0.5
3,140,652	-		IAI47_14880	0.45	+0.2
3,140,652	-		IAI47_14880	0.45	+0.6
3,140,652	-		IAI47_14880	0.45	-0.2
3,140,652	-		IAI47_14880	0.45	-0.8
3,140,668	+		IAI47_14880	0.47	+1.0
3,140,668	+		IAI47_14880	0.47	-1.0
3,140,668	+		IAI47_14880	0.47	-0.0
3,140,668	+		IAI47_14880	0.47	+1.6
3,140,669	-		IAI47_14880	0.48	+0.1
3,140,669	-		IAI47_14880	0.48	+0.3
3,140,669	-		IAI47_14880	0.48	-1.1
3,140,669	-		IAI47_14880	0.48	-0.3
3,140,669	-		IAI47_14880	0.48	+0.4
3,140,684	+		IAI47_14880	0.50	-1.1
3,140,685	-		IAI47_14880	0.50	+1.6
3,140,845	+		IAI47_14880	0.74	-1.4
3,140,846	-		IAI47_14880	0.74	+1.6
3,140,846	-		IAI47_14880	0.74	-0.3
3,140,846	-		IAI47_14880	0.74	+0.8
3,140,846	-		IAI47_14880	0.74	+0.0
3,140,899	+		IAI47_14880	0.82	-0.0
3,140,985	+				+0.8
3,140,986	-				-1.0
3,141,027	+				-0.5
3,141,027	+				+0.4
3,141,028	-				+1.0
3,141,040	-				-0.2
3,141,040	-				-0.8
3,141,040	-				-0.4
3,141,051	-				+0.3
3,141,051	-				-0.2
3,141,051	-				+1.5
3,141,068	+				-0.5
3,141,096	+				-0.8
3,141,096	+				-0.7
3,141,096	+				-1.0
3,141,096	+				-0.5
3,141,097	-				-1.2
3,141,097	-				-0.2
3,141,104	+				-1.4
3,141,104	+				-0.8
3,141,104	+				+0.4
3,141,104	+				-0.4
3,141,104	+				+0.2
3,141,104	+				+1.8
3,141,105	-				+0.3
3,141,105	-				-2.0
3,141,105	-				+0.2
3,141,105	-				-0.2
3,141,105	-				+0.1
3,141,126	+				+0.3
3,141,126	+				-0.7
3,141,126	+				+0.3
3,141,127	-				+0.5
3,141,127	-				+0.6
3,141,127	-				-1.4
3,141,127	-				+0.6
3,141,127	-				+0.8
3,141,174	+				-0.4
3,141,175	-				+0.8
3,141,184	+				-0.5
3,141,188	+				-0.9
3,141,188	+				-1.2
3,141,192	-				-0.1
3,141,192	-				-0.2
3,141,192	-				-0.6
3,141,205	+				-0.2
3,141,205	+				-0.5
3,141,205	+				-0.3
3,141,206	-				+1.0
3,141,206	-				-1.2
3,141,206	-				+2.8
3,141,221	+		IAI47_14885	0.11	+0.8
3,141,222	-		IAI47_14885	0.11	+0.9
3,141,272	+		IAI47_14885	0.24	-0.4
3,141,272	+		IAI47_14885	0.24	+0.0
3,141,272	+		IAI47_14885	0.24	-0.9
3,141,272	+		IAI47_14885	0.24	+0.3
3,141,272	+		IAI47_14885	0.24	+0.1
3,141,273	-		IAI47_14885	0.24	-0.8
3,141,273	-		IAI47_14885	0.24	-0.2
3,141,273	-		IAI47_14885	0.24	+0.2
3,141,332	+		IAI47_14885	0.39	+0.3
3,141,332	+		IAI47_14885	0.39	+0.1
3,141,332	+		IAI47_14885	0.39	-0.5
3,141,435	+		IAI47_14885	0.66	-0.6
3,141,435	+		IAI47_14885	0.66	+0.3
3,141,436	-		IAI47_14885	0.66	+0.0
3,141,436	-		IAI47_14885	0.66	-0.4
3,141,436	-		IAI47_14885	0.66	+0.5
3,141,568	-				+0.2
3,141,705	+		IAI47_14890	0.13	-0.2
3,141,705	+		IAI47_14890	0.13	+0.8
3,141,705	+		IAI47_14890	0.13	-0.7
3,141,705	+		IAI47_14890	0.13	-1.4
3,141,705	+		IAI47_14890	0.13	+0.4
3,141,705	+		IAI47_14890	0.13	+0.1
3,141,706	-		IAI47_14890	0.13	+0.1
3,141,706	-		IAI47_14890	0.13	+2.3
3,141,706	-		IAI47_14890	0.13	-0.2
3,141,706	-		IAI47_14890	0.13	+0.4
3,141,706	-		IAI47_14890	0.13	-0.2
3,141,708	+		IAI47_14890	0.13	+0.6
3,141,708	+		IAI47_14890	0.13	+0.2
3,141,708	+		IAI47_14890	0.13	+0.6
3,141,708	+		IAI47_14890	0.13	-0.2
3,141,708	+		IAI47_14890	0.13	+0.6
3,141,708	+		IAI47_14890	0.13	+0.1
3,141,708	+		IAI47_14890	0.13	-0.2
3,141,708	+		IAI47_14890	0.13	-2.2
3,141,708	+		IAI47_14890	0.13	-1.0
3,141,709	-		IAI47_14890	0.13	+0.5
3,141,709	-		IAI47_14890	0.13	+1.3
3,141,709	-		IAI47_14890	0.13	+0.2
3,141,709	-		IAI47_14890	0.13	-1.4
3,141,709	-		IAI47_14890	0.13	+0.8
3,141,754	+		IAI47_14890	0.18	-0.0
3,141,852	-		IAI47_14890	0.27	-0.6
3,141,857	-		IAI47_14890	0.27	+1.8
3,141,899	-		IAI47_14890	0.31	+1.0
3,141,899	-		IAI47_14890	0.31	+2.6
3,141,908	-		IAI47_14890	0.32	+0.3
3,142,003	+		IAI47_14890	0.41	+0.9
3,142,003	+		IAI47_14890	0.41	-0.9
3,142,004	-		IAI47_14890	0.41	-0.8
3,142,004	-		IAI47_14890	0.41	+0.2
3,142,042	+		IAI47_14890	0.45	-1.0
3,142,043	-		IAI47_14890	0.45	+1.6
3,142,043	-		IAI47_14890	0.45	+1.9
3,142,043	-		IAI47_14890	0.45	+1.1
3,142,135	+		IAI47_14890	0.53	+0.0
3,142,135	+		IAI47_14890	0.53	+0.3
3,142,136	-		IAI47_14890	0.53	+0.8
3,142,150	+		IAI47_14890	0.55	+1.3
3,142,150	+		IAI47_14890	0.55	+0.9
3,142,150	+		IAI47_14890	0.55	-0.5
3,142,151	-		IAI47_14890	0.55	+1.8
3,142,200	+		IAI47_14890	0.59	-0.7
3,142,201	-		IAI47_14890	0.59	-1.2
3,142,241	+		IAI47_14890	0.63	+0.5
3,142,242	-		IAI47_14890	0.63	+1.1
3,142,319	+		IAI47_14890	0.71	-0.0
3,142,321	+		IAI47_14890	0.71	+1.9
3,142,321	+		IAI47_14890	0.71	+0.0
3,142,322	-		IAI47_14890	0.71	+0.6
3,142,323	+		IAI47_14890	0.71	+0.5
3,142,323	+		IAI47_14890	0.71	+0.2
3,142,323	+		IAI47_14890	0.71	-0.4
3,142,323	+		IAI47_14890	0.71	-0.5
3,142,323	+		IAI47_14890	0.71	+1.4
3,142,323	+		IAI47_14890	0.71	+0.0
3,142,323	+		IAI47_14890	0.71	+0.8
3,142,323	+		IAI47_14890	0.71	+0.0
3,142,323	+		IAI47_14890	0.71	-0.0
3,142,323	+		IAI47_14890	0.71	+0.3
3,142,323	+		IAI47_14890	0.71	+0.0
3,142,324	-		IAI47_14890	0.71	+0.3
3,142,324	-		IAI47_14890	0.71	+1.1
3,142,324	-		IAI47_14890	0.71	-0.2
3,142,324	-		IAI47_14890	0.71	-0.6
3,142,324	-		IAI47_14890	0.71	+1.2
3,142,324	-		IAI47_14890	0.71	-0.8
3,142,324	-		IAI47_14890	0.71	+0.1
3,142,324	-		IAI47_14890	0.71	-0.8
3,142,324	-		IAI47_14890	0.71	-0.8
3,142,324	-		IAI47_14890	0.71	+1.2
3,142,328	+		IAI47_14890	0.71	+0.1
3,142,328	+		IAI47_14890	0.71	+0.6
3,142,328	+		IAI47_14890	0.71	+0.1
3,142,328	+		IAI47_14890	0.71	+0.8
3,142,328	+		IAI47_14890	0.71	+0.1
3,142,328	+		IAI47_14890	0.71	-1.7
3,142,329	-		IAI47_14890	0.71	-0.4
3,142,329	-		IAI47_14890	0.71	+0.3
3,142,329	-		IAI47_14890	0.71	+0.8
3,142,329	-		IAI47_14890	0.71	-0.1
3,142,338	-		IAI47_14890	0.72	-0.2
3,142,352	-		IAI47_14890	0.74	+0.8
3,142,352	-		IAI47_14890	0.74	+0.2
3,142,365	+		IAI47_14890	0.75	-2.0
3,142,365	+		IAI47_14890	0.75	+0.6
3,142,382	-		IAI47_14890	0.76	+0.6
3,142,425	+		IAI47_14890	0.80	+0.3
3,142,425	+		IAI47_14890	0.80	+0.2
3,142,425	+		IAI47_14890	0.80	-0.0
3,142,425	+		IAI47_14890	0.80	-0.3
3,142,425	+		IAI47_14890	0.80	-0.0
3,142,425	+		IAI47_14890	0.80	-0.2
3,142,425	+		IAI47_14890	0.80	-1.0
3,142,425	+		IAI47_14890	0.80	+1.1
3,142,425	+		IAI47_14890	0.80	-0.2
3,142,426	-		IAI47_14890	0.81	+0.1
3,142,426	-		IAI47_14890	0.81	+0.8
3,142,426	-		IAI47_14890	0.81	+0.1
3,142,426	-		IAI47_14890	0.81	-0.3
3,142,426	-		IAI47_14890	0.81	+0.8
3,142,430	-		IAI47_14890	0.81	-0.2
3,142,525	+		IAI47_14890	0.90	-0.7
3,142,525	+		IAI47_14890	0.90	+1.3
3,142,525	+		IAI47_14890	0.90	+2.0
3,142,525	+		IAI47_14890	0.90	-0.0
3,142,525	+		IAI47_14890	0.90	-0.4
3,142,526	-		IAI47_14890	0.90	+0.1
3,142,526	-		IAI47_14890	0.90	+0.5
3,142,526	-		IAI47_14890	0.90	-0.4
3,142,526	-		IAI47_14890	0.90	-1.2
3,142,526	-		IAI47_14890	0.90	-0.4
3,142,536	-				-1.0
3,142,536	-				-1.7
3,142,536	-				-0.1
3,142,616	+				-1.6
3,142,692	-				-0.8
3,142,829	+				-0.1
3,142,954	+		IAI47_14895	0.16	-0.4
3,142,954	+		IAI47_14895	0.16	-0.8
3,142,955	-		IAI47_14895	0.16	-0.1
3,142,981	-		IAI47_14895	0.19	-0.1
3,143,081	+		IAI47_14895	0.28	+0.8
3,143,081	+		IAI47_14895	0.28	-0.0
3,143,082	-		IAI47_14895	0.29	+0.2
3,143,082	-		IAI47_14895	0.29	+0.3
3,143,082	-		IAI47_14895	0.29	+0.4
3,143,178	-		IAI47_14895	0.38	-1.6
3,143,178	-		IAI47_14895	0.38	+2.3
3,143,178	-		IAI47_14895	0.38	-1.0
3,143,178	-		IAI47_14895	0.38	+0.9
3,143,227	+		IAI47_14895	0.43	+0.4
3,143,227	+		IAI47_14895	0.43	-0.2
3,143,228	-		IAI47_14895	0.43	-1.0
3,143,228	-		IAI47_14895	0.43	-0.8
3,143,228	-		IAI47_14895	0.43	-0.2
3,143,268	+		IAI47_14895	0.47	-2.2
3,143,268	+		IAI47_14895	0.47	+0.3
3,143,269	-		IAI47_14895	0.47	+0.6
3,143,269	-		IAI47_14895	0.47	+1.7
3,143,304	+		IAI47_14895	0.51	+0.8
3,143,305	-		IAI47_14895	0.51	-0.8
3,143,331	+		IAI47_14895	0.53	-0.4
3,143,331	+		IAI47_14895	0.53	+0.1
3,143,332	-		IAI47_14895	0.53	-0.1
3,143,367	+		IAI47_14895	0.57	+0.2
3,143,367	+		IAI47_14895	0.57	+1.2
3,143,367	+		IAI47_14895	0.57	+0.0
3,143,367	+		IAI47_14895	0.57	+0.3
3,143,367	+		IAI47_14895	0.57	-0.2
3,143,368	-		IAI47_14895	0.57	-0.2
3,143,392	-		IAI47_14895	0.59	-1.0
3,143,470	+		IAI47_14895	0.67	+0.1
3,143,470	+		IAI47_14895	0.67	+0.2
3,143,470	+		IAI47_14895	0.67	-0.3
3,143,470	+		IAI47_14895	0.67	-1.2
3,143,470	+		IAI47_14895	0.67	-1.6
3,143,470	+		IAI47_14895	0.67	-1.1
3,143,470	+		IAI47_14895	0.67	+2.3
3,143,470	+		IAI47_14895	0.67	+1.6
3,143,470	+		IAI47_14895	0.67	+0.8
3,143,470	+		IAI47_14895	0.67	+2.3
3,143,470	+		IAI47_14895	0.67	-0.8
3,143,470	+		IAI47_14895	0.67	-0.1
3,143,470	+		IAI47_14895	0.67	+1.5
3,143,471	-		IAI47_14895	0.67	-0.1
3,143,471	-		IAI47_14895	0.67	-1.5
3,143,471	-		IAI47_14895	0.67	-0.3
3,143,471	-		IAI47_14895	0.67	-0.2
3,143,471	-		IAI47_14895	0.67	+0.8
3,143,471	-		IAI47_14895	0.67	+0.3
3,143,471	-		IAI47_14895	0.67	-0.2
3,143,471	-		IAI47_14895	0.67	+0.2
3,143,471	-		IAI47_14895	0.67	-0.7
3,143,471	-		IAI47_14895	0.67	+0.8
3,143,471	-		IAI47_14895	0.67	-0.8
3,143,471	-		IAI47_14895	0.67	-0.8
3,143,474	+		IAI47_14895	0.68	-0.3
3,143,474	+		IAI47_14895	0.68	-0.2
3,143,475	-		IAI47_14895	0.68	-0.2
3,143,475	-		IAI47_14895	0.68	+0.8
3,143,475	-		IAI47_14895	0.68	+1.9
3,143,475	-		IAI47_14895	0.68	+1.1
3,143,475	-		IAI47_14895	0.68	-0.6
3,143,475	-		IAI47_14895	0.68	+0.6
3,143,509	+		IAI47_14895	0.71	-1.1
3,143,509	+		IAI47_14895	0.71	+0.2
3,143,509	+		IAI47_14895	0.71	-1.3
3,143,550	+		IAI47_14895	0.75	-1.6
3,143,550	+		IAI47_14895	0.75	-0.2
3,143,550	+		IAI47_14895	0.75	+0.1
3,143,551	-		IAI47_14895	0.75	+0.3
3,143,551	-		IAI47_14895	0.75	-1.8
3,143,615	+		IAI47_14895	0.82	+1.2
3,143,615	+		IAI47_14895	0.82	-0.6
3,143,616	-		IAI47_14895	0.82	+0.3
3,143,616	-		IAI47_14895	0.82	-0.7
3,143,616	-		IAI47_14895	0.82	+1.4
3,143,616	-		IAI47_14895	0.82	+0.1