Strain Fitness in Pantoea sp. MT58 around IAI47_13165

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
2,783,605	+		IAI47_13160	0.39	-0.0
2,783,605	+		IAI47_13160	0.39	-0.6
2,783,638	+		IAI47_13160	0.41	+1.8
2,783,638	+		IAI47_13160	0.41	-0.6
2,783,639	-		IAI47_13160	0.41	+1.2
2,783,648	+		IAI47_13160	0.42	+1.6
2,783,677	+		IAI47_13160	0.43	-1.0
2,783,677	+		IAI47_13160	0.43	+0.4
2,783,677	+		IAI47_13160	0.43	+0.2
2,783,677	+		IAI47_13160	0.43	-0.8
2,783,677	+		IAI47_13160	0.43	-0.4
2,783,678	-		IAI47_13160	0.44	+0.0
2,783,732	+		IAI47_13160	0.47	+0.2
2,783,733	-		IAI47_13160	0.47	-0.2
2,783,766	+		IAI47_13160	0.49	+0.8
2,783,766	+		IAI47_13160	0.49	-0.2
2,783,767	-		IAI47_13160	0.49	+0.2
2,783,842	+		IAI47_13160	0.54	+0.9
2,783,842	+		IAI47_13160	0.54	+0.2
2,783,842	+		IAI47_13160	0.54	+0.2
2,783,842	+		IAI47_13160	0.54	-0.8
2,783,843	-		IAI47_13160	0.54	+0.8
2,783,843	-		IAI47_13160	0.54	-0.2
2,783,887	+		IAI47_13160	0.57	+0.5
2,783,887	+		IAI47_13160	0.57	+0.5
2,783,887	+		IAI47_13160	0.57	-0.1
2,783,887	+		IAI47_13160	0.57	+0.0
2,783,983	+		IAI47_13160	0.63	+1.4
2,783,993	+		IAI47_13160	0.64	+0.5
2,783,993	+		IAI47_13160	0.64	-0.2
2,784,087	+		IAI47_13160	0.70	+1.5
2,784,373	+		IAI47_13160	0.89	+0.1
2,784,374	-		IAI47_13160	0.89	+0.9
2,784,374	-		IAI47_13160	0.89	-1.2
2,784,374	-		IAI47_13160	0.89	-1.1
2,784,374	-		IAI47_13160	0.89	-1.7
2,784,423	+				-1.4
2,784,423	+				-0.2
2,784,423	+				+2.0
2,784,424	-				-0.1
2,784,424	-				+1.1
2,784,424	-				+0.0
2,784,427	+				+1.4
2,784,427	+				+1.8
2,784,428	-				-0.9
2,784,428	-				-1.5
2,784,456	+				-1.0
2,784,457	-				+1.8
2,784,500	+				+0.6
2,784,500	+				-0.8
2,784,500	+				-0.5
2,784,500	+				-2.2
2,784,501	-				-0.1
2,784,501	-				+0.4
2,784,501	-				+0.2
2,784,527	-				+0.8
2,784,527	-				+0.3
2,784,544	+				+0.8
2,784,544	+				-0.5
2,784,545	-				-0.1
2,784,545	-				+0.2
2,784,545	-				+1.1
2,784,545	-				-0.9
2,784,545	-				+0.2
2,784,620	+				+1.7
2,784,620	+				+0.2
2,784,621	-				+0.2
2,784,646	+				+2.5
2,784,646	+				-1.3
2,784,646	+				+0.1
2,784,646	+				-0.8
2,784,646	+				+0.8
2,784,646	+				-0.1
2,784,646	+				-0.1
2,784,647	-				-0.5
2,784,647	-				-1.1
2,784,647	-				+0.8
2,784,657	-				+0.4
2,784,682	+				+0.8
2,784,682	+				+0.8
2,784,682	+				+0.1
2,784,683	-				+0.5
2,784,683	-				+2.4
2,784,705	-		IAI47_13165	0.10	+0.8
2,784,764	+		IAI47_13165	0.14	+2.1
2,784,765	-		IAI47_13165	0.14	+0.8
2,784,765	-		IAI47_13165	0.14	-0.4
2,784,806	+		IAI47_13165	0.17	+0.5
2,784,806	+		IAI47_13165	0.17	-2.5
2,784,882	-		IAI47_13165	0.22	+0.0
2,784,883	-		IAI47_13165	0.22	+0.1
2,784,893	+		IAI47_13165	0.22	+1.8
2,784,894	-		IAI47_13165	0.22	-0.6
2,784,917	+		IAI47_13165	0.24	+0.2
2,784,918	-		IAI47_13165	0.24	-1.5
2,784,950	+		IAI47_13165	0.26	-1.1
2,784,951	-		IAI47_13165	0.26	-0.9
2,784,996	-		IAI47_13165	0.29	-0.5
2,784,996	-		IAI47_13165	0.29	-0.2
2,784,996	-		IAI47_13165	0.29	+0.8
2,785,093	+		IAI47_13165	0.35	+1.5
2,785,093	+		IAI47_13165	0.35	+0.6
2,785,093	+		IAI47_13165	0.35	+0.5
2,785,094	-		IAI47_13165	0.35	-0.6
2,785,094	-		IAI47_13165	0.35	-0.5
2,785,094	-		IAI47_13165	0.35	-2.4
2,785,094	-		IAI47_13165	0.35	+0.4
2,785,094	-		IAI47_13165	0.35	+0.8
2,785,148	+		IAI47_13165	0.39	+1.6
2,785,148	+		IAI47_13165	0.39	+0.5
2,785,148	+		IAI47_13165	0.39	-0.5
2,785,148	+		IAI47_13165	0.39	-1.7
2,785,148	+		IAI47_13165	0.39	+0.1
2,785,148	+		IAI47_13165	0.39	+1.2
2,785,148	+		IAI47_13165	0.39	-0.1
2,785,148	+		IAI47_13165	0.39	-0.5
2,785,149	-		IAI47_13165	0.39	+0.2
2,785,149	-		IAI47_13165	0.39	-1.3
2,785,149	-		IAI47_13165	0.39	+0.0
2,785,149	-		IAI47_13165	0.39	-0.7
2,785,193	+		IAI47_13165	0.41	+0.0
2,785,194	-		IAI47_13165	0.41	-1.2
2,785,194	-		IAI47_13165	0.41	-0.2
2,785,195	+		IAI47_13165	0.42	-0.4
2,785,195	+		IAI47_13165	0.42	-0.5
2,785,305	+		IAI47_13165	0.49	+0.0
2,785,336	+		IAI47_13165	0.51	-0.5
2,785,336	+		IAI47_13165	0.51	+1.0
2,785,336	+		IAI47_13165	0.51	-1.1
2,785,336	+		IAI47_13165	0.51	-0.8
2,785,336	+		IAI47_13165	0.51	-0.2
2,785,336	+		IAI47_13165	0.51	-0.6
2,785,336	+		IAI47_13165	0.51	-0.6
2,785,336	+		IAI47_13165	0.51	-1.0
2,785,337	-		IAI47_13165	0.51	+1.3
2,785,337	-		IAI47_13165	0.51	-0.1
2,785,337	-		IAI47_13165	0.51	+0.4
2,785,337	-		IAI47_13165	0.51	+0.8
2,785,337	-		IAI47_13165	0.51	-1.0
2,785,337	-		IAI47_13165	0.51	-2.7
2,785,348	+		IAI47_13165	0.51	+0.8
2,785,348	+		IAI47_13165	0.51	-0.8
2,785,349	-		IAI47_13165	0.51	-0.4
2,785,392	+		IAI47_13165	0.54	-0.1
2,785,393	-		IAI47_13165	0.54	+0.8
2,785,464	+		IAI47_13165	0.59	+1.0
2,785,464	+		IAI47_13165	0.59	+1.4
2,785,470	-		IAI47_13165	0.59	-0.3
2,785,470	-		IAI47_13165	0.59	+0.4
2,785,470	-		IAI47_13165	0.59	+0.5
2,785,470	-		IAI47_13165	0.59	-1.2
2,785,489	+		IAI47_13165	0.60	-0.4
2,785,490	-		IAI47_13165	0.60	+1.2
2,785,490	-		IAI47_13165	0.60	-0.4
2,785,505	+		IAI47_13165	0.61	+0.0
2,785,505	+		IAI47_13165	0.61	-0.9
2,785,505	+		IAI47_13165	0.61	-0.1
2,785,505	+		IAI47_13165	0.61	+0.6
2,785,506	-		IAI47_13165	0.61	-0.5
2,785,506	-		IAI47_13165	0.61	-0.2
2,785,506	-		IAI47_13165	0.61	-0.7
2,785,506	-		IAI47_13165	0.61	+0.5
2,785,520	+		IAI47_13165	0.62	-1.0
2,785,521	-		IAI47_13165	0.62	+0.8
2,785,521	-		IAI47_13165	0.62	+1.5
2,785,521	-		IAI47_13165	0.62	-1.8
2,785,521	-		IAI47_13165	0.62	+0.5
2,785,521	-		IAI47_13165	0.62	-0.2
2,785,521	-		IAI47_13165	0.62	-1.1
2,785,552	+		IAI47_13165	0.64	+1.4
2,785,552	+		IAI47_13165	0.64	+0.3
2,785,552	+		IAI47_13165	0.64	-0.5
2,785,553	-		IAI47_13165	0.64	-1.7
2,785,553	-		IAI47_13165	0.64	+0.4
2,785,553	-		IAI47_13165	0.64	+0.8
2,785,589	+		IAI47_13165	0.67	-0.9
2,785,589	+		IAI47_13165	0.67	+1.8
2,785,589	+		IAI47_13165	0.67	+0.8
2,785,592	+		IAI47_13165	0.67	+1.0
2,785,592	+		IAI47_13165	0.67	+0.3
2,785,592	+		IAI47_13165	0.67	-0.1
2,785,592	+		IAI47_13165	0.67	-0.5
2,785,592	+		IAI47_13165	0.67	+0.4
2,785,592	+		IAI47_13165	0.67	+0.2
2,785,592	+		IAI47_13165	0.67	+0.5
2,785,593	-		IAI47_13165	0.67	-0.2
2,785,593	-		IAI47_13165	0.67	-2.3
2,785,593	-		IAI47_13165	0.67	+0.6
2,785,615	+		IAI47_13165	0.68	+0.6
2,785,615	+		IAI47_13165	0.68	+0.5
2,785,615	+		IAI47_13165	0.68	+1.0
2,785,615	+		IAI47_13165	0.68	+0.4
2,785,616	-		IAI47_13165	0.68	+1.1
2,785,616	-		IAI47_13165	0.68	+1.8
2,785,616	-		IAI47_13165	0.68	+0.8
2,785,616	-		IAI47_13165	0.68	+0.7
2,785,616	-		IAI47_13165	0.68	-0.6
2,785,616	-		IAI47_13165	0.68	-1.0
2,785,667	+		IAI47_13165	0.72	+2.4
2,785,670	+		IAI47_13165	0.72	+0.2
2,785,670	+		IAI47_13165	0.72	-0.1
2,785,671	-		IAI47_13165	0.72	-0.7
2,785,671	-		IAI47_13165	0.72	+1.4
2,785,671	-		IAI47_13165	0.72	-1.8
2,785,671	-		IAI47_13165	0.72	+0.3
2,785,671	-		IAI47_13165	0.72	-0.7
2,785,720	+		IAI47_13165	0.75	-0.8
2,785,720	+		IAI47_13165	0.75	+0.3
2,785,720	+		IAI47_13165	0.75	+0.5
2,785,721	-		IAI47_13165	0.75	-0.6
2,785,721	-		IAI47_13165	0.75	-1.5
2,785,721	-		IAI47_13165	0.75	+0.8
2,785,875	-		IAI47_13165	0.85	+0.4
2,785,907	+		IAI47_13165	0.87	+1.5
2,785,907	+		IAI47_13165	0.87	-0.8
2,785,907	+		IAI47_13165	0.87	-0.0
2,785,908	-		IAI47_13165	0.87	-0.2
2,785,908	-		IAI47_13165	0.87	+0.4
2,785,936	+		IAI47_13165	0.89	-0.4
2,785,936	+		IAI47_13165	0.89	-0.9
2,785,936	+		IAI47_13165	0.89	+0.8
2,785,936	+		IAI47_13165	0.89	+2.4
2,785,937	-		IAI47_13165	0.89	-0.2
2,785,937	-		IAI47_13165	0.89	-0.4
2,785,966	+				+0.7
2,785,966	+				-1.7
2,785,967	-				-0.4
2,785,967	-				-0.3
2,785,967	-				+0.6
2,785,967	-				-1.5
2,785,967	-				+0.4
2,786,009	+				+0.5
2,786,036	+				+0.0
2,786,037	-				+0.3
2,786,078	+				+1.8
2,786,079	-				+0.1
2,786,121	-				-0.4
2,786,220	+				+0.8
2,786,220	+				+0.8
2,786,221	-				-0.4
2,786,221	-				+0.1
2,786,221	-				-0.7
2,786,225	-		IAI47_13170	0.10	+1.8
2,786,225	-		IAI47_13170	0.10	+1.8
2,786,225	-		IAI47_13170	0.10	+0.8
2,786,474	-		IAI47_13170	0.32	-0.2
2,786,484	+		IAI47_13170	0.33	-1.1
2,786,485	-		IAI47_13170	0.33	+1.0
2,786,485	-		IAI47_13170	0.33	+0.8
2,786,485	-		IAI47_13170	0.33	+0.0
2,786,503	+		IAI47_13170	0.34	-0.5
2,786,504	-		IAI47_13170	0.35	-0.5
2,786,505	+		IAI47_13170	0.35	+0.3
2,786,505	+		IAI47_13170	0.35	+0.5
2,786,505	+		IAI47_13170	0.35	+0.8
2,786,506	-		IAI47_13170	0.35	-0.5
2,786,506	-		IAI47_13170	0.35	+1.8
2,786,506	-		IAI47_13170	0.35	+2.0
2,786,506	-		IAI47_13170	0.35	+0.0
2,786,506	-		IAI47_13170	0.35	+0.3
2,786,506	-		IAI47_13170	0.35	-0.4
2,786,506	-		IAI47_13170	0.35	+0.2
2,786,515	+		IAI47_13170	0.36	+0.5
2,786,515	+		IAI47_13170	0.36	-0.5
2,786,515	+		IAI47_13170	0.36	-0.5
2,786,516	-		IAI47_13170	0.36	-0.5
2,786,527	+		IAI47_13170	0.37	-1.5
2,786,528	-		IAI47_13170	0.37	-0.6
2,786,531	+		IAI47_13170	0.37	+0.5
2,786,531	+		IAI47_13170	0.37	+0.8
2,786,531	+		IAI47_13170	0.37	+0.6
2,786,531	+		IAI47_13170	0.37	-0.2
2,786,531	+		IAI47_13170	0.37	+0.3
2,786,531	+		IAI47_13170	0.37	-0.5
2,786,531	+		IAI47_13170	0.37	+1.0
2,786,531	+		IAI47_13170	0.37	+1.0
2,786,532	-		IAI47_13170	0.37	-0.8
2,786,532	-		IAI47_13170	0.37	-1.8
2,786,532	-		IAI47_13170	0.37	-0.5
2,786,532	-		IAI47_13170	0.37	-1.5
2,786,532	-		IAI47_13170	0.37	+0.2
2,786,532	-		IAI47_13170	0.37	-0.5
2,786,645	+		IAI47_13170	0.47	-0.8
2,786,646	-		IAI47_13170	0.47	+0.5
2,786,646	-		IAI47_13170	0.47	-0.2
2,786,646	-		IAI47_13170	0.47	-1.0
2,786,666	+		IAI47_13170	0.49	-0.4
2,786,666	+		IAI47_13170	0.49	-2.4
2,786,666	+		IAI47_13170	0.49	+0.2
2,786,667	-		IAI47_13170	0.49	+0.8
2,786,690	-		IAI47_13170	0.51	-0.4
2,786,692	+		IAI47_13170	0.51	-0.6
2,786,692	+		IAI47_13170	0.51	+0.4
2,786,693	-		IAI47_13170	0.51	+1.0
2,786,693	-		IAI47_13170	0.51	-1.5
2,786,693	-		IAI47_13170	0.51	-1.5
2,786,693	-		IAI47_13170	0.51	-0.4
2,786,693	-		IAI47_13170	0.51	-0.5
2,786,693	-		IAI47_13170	0.51	-0.3
2,786,736	+		IAI47_13170	0.55	-1.7
2,786,758	+		IAI47_13170	0.57	-0.6
2,786,758	+		IAI47_13170	0.57	+0.4
2,786,758	+		IAI47_13170	0.57	-1.8
2,786,812	-		IAI47_13170	0.61	-0.9
2,786,816	+		IAI47_13170	0.62	+0.8
2,786,816	+		IAI47_13170	0.62	+0.8
2,786,817	-		IAI47_13170	0.62	+0.8
2,786,817	-		IAI47_13170	0.62	+0.0
2,786,817	-		IAI47_13170	0.62	+1.5
2,786,959	+		IAI47_13170	0.74	+0.6
2,786,959	+		IAI47_13170	0.74	+0.3
2,786,959	+		IAI47_13170	0.74	-1.1
2,786,999	-		IAI47_13170	0.78	+1.4
2,786,999	-		IAI47_13170	0.78	+0.0
2,787,007	+		IAI47_13170	0.78	+0.0
2,787,007	+		IAI47_13170	0.78	+0.0
2,787,007	+		IAI47_13170	0.78	-0.3
2,787,007	+		IAI47_13170	0.78	-0.1
2,787,007	+		IAI47_13170	0.78	+0.2
2,787,007	+		IAI47_13170	0.78	+0.2
2,787,007	+		IAI47_13170	0.78	-0.0
2,787,008	-		IAI47_13170	0.79	-1.0
2,787,008	-		IAI47_13170	0.79	-0.6
2,787,008	-		IAI47_13170	0.79	+1.5
2,787,008	-		IAI47_13170	0.79	-0.2
2,787,010	+		IAI47_13170	0.79	-0.1
2,787,010	+		IAI47_13170	0.79	+0.2
2,787,010	+		IAI47_13170	0.79	+0.8
2,787,052	+		IAI47_13170	0.82	+0.0
2,787,052	+		IAI47_13170	0.82	+0.2
2,787,053	-		IAI47_13170	0.82	-1.0
2,787,053	-		IAI47_13170	0.82	-0.8
2,787,061	+		IAI47_13170	0.83	+0.2
2,787,062	-		IAI47_13170	0.83	+0.0
2,787,065	+		IAI47_13170	0.84	-0.6
2,787,094	+		IAI47_13170	0.86	+0.1
2,787,094	+		IAI47_13170	0.86	-0.7
2,787,094	+		IAI47_13170	0.86	+0.3
2,787,095	-		IAI47_13170	0.86	-0.1
2,787,095	-		IAI47_13170	0.86	-1.2