Strain Fitness in Pantoea sp. MT58 around IAI47_11685

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
2,476,292	+		IAI47_11680	0.73	-0.4
2,476,292	+		IAI47_11680	0.73	+0.0
2,476,292	+		IAI47_11680	0.73	+0.3
2,476,293	-		IAI47_11680	0.73	+0.9
2,476,293	-		IAI47_11680	0.73	+0.3
2,476,293	-		IAI47_11680	0.73	+0.1
2,476,404	-		IAI47_11680	0.76	+2.0
2,476,404	-		IAI47_11680	0.76	+0.9
2,476,419	+		IAI47_11680	0.76	+0.3
2,476,419	+		IAI47_11680	0.76	+0.2
2,476,419	+		IAI47_11680	0.76	+0.8
2,476,419	+		IAI47_11680	0.76	+0.0
2,476,420	-		IAI47_11680	0.76	+0.7
2,476,420	-		IAI47_11680	0.76	+0.0
2,476,420	-		IAI47_11680	0.76	-1.0
2,476,420	-		IAI47_11680	0.76	+1.3
2,476,448	+		IAI47_11680	0.77	-0.3
2,476,448	+		IAI47_11680	0.77	-0.9
2,476,449	-		IAI47_11680	0.77	+0.8
2,476,449	-		IAI47_11680	0.77	-0.3
2,476,449	-		IAI47_11680	0.77	+1.6
2,476,449	-		IAI47_11680	0.77	+0.9
2,476,449	-		IAI47_11680	0.77	-0.4
2,476,449	-		IAI47_11680	0.77	+0.5
2,476,449	-		IAI47_11680	0.77	+1.0
2,476,581	+		IAI47_11680	0.81	+0.3
2,476,581	+		IAI47_11680	0.81	+0.4
2,476,582	-		IAI47_11680	0.81	+0.9
2,476,601	+		IAI47_11680	0.81	+1.6
2,476,601	+		IAI47_11680	0.81	+0.7
2,476,605	+		IAI47_11680	0.81	-0.3
2,476,605	+		IAI47_11680	0.81	+0.3
2,476,605	+		IAI47_11680	0.81	+2.8
2,476,605	+		IAI47_11680	0.81	+0.4
2,476,605	+		IAI47_11680	0.81	+0.9
2,476,605	+		IAI47_11680	0.81	+0.7
2,476,605	+		IAI47_11680	0.81	-0.1
2,476,606	-		IAI47_11680	0.81	-0.9
2,476,606	-		IAI47_11680	0.81	-0.7
2,476,606	-		IAI47_11680	0.81	+0.3
2,476,606	-		IAI47_11680	0.81	+0.2
2,476,671	+		IAI47_11680	0.83	-0.1
2,476,671	+		IAI47_11680	0.83	+0.4
2,476,671	+		IAI47_11680	0.83	+1.2
2,476,671	+		IAI47_11680	0.83	+0.7
2,476,671	+		IAI47_11680	0.83	-0.2
2,476,671	+		IAI47_11680	0.83	+2.6
2,476,671	+		IAI47_11680	0.83	-2.3
2,476,671	+		IAI47_11680	0.83	-0.4
2,476,672	-		IAI47_11680	0.83	+0.7
2,476,672	-		IAI47_11680	0.83	+0.7
2,476,672	-		IAI47_11680	0.83	+1.3
2,476,672	-		IAI47_11680	0.83	-1.0
2,476,672	-		IAI47_11680	0.83	-0.0
2,476,672	-		IAI47_11680	0.83	+0.2
2,476,672	-		IAI47_11680	0.83	+1.7
2,476,672	-		IAI47_11680	0.83	+0.9
2,476,672	-		IAI47_11680	0.83	+1.2
2,476,672	-		IAI47_11680	0.83	+0.9
2,476,672	-		IAI47_11680	0.83	+0.5
2,476,818	+		IAI47_11680	0.87	+0.3
2,476,847	+		IAI47_11680	0.88	+0.9
2,476,847	+		IAI47_11680	0.88	+1.6
2,476,847	+		IAI47_11680	0.88	+0.4
2,476,847	+		IAI47_11680	0.88	+0.2
2,476,862	+		IAI47_11680	0.88	-1.4
2,476,862	+		IAI47_11680	0.88	+0.1
2,476,862	+		IAI47_11680	0.88	+0.4
2,476,862	+		IAI47_11680	0.88	+1.2
2,476,863	-		IAI47_11680	0.88	+1.7
2,476,863	-		IAI47_11680	0.88	-0.7
2,477,070	-				+1.7
2,477,075	+				+0.5
2,477,075	+				+1.5
2,477,076	-				+1.5
2,477,115	-				+0.3
2,477,202	+				-0.3
2,477,202	+				+0.9
2,477,202	+				-1.3
2,477,203	-				-0.1
2,477,203	-				-0.3
2,477,203	-				+2.5
2,477,203	-				+0.1
2,477,271	+				+1.1
2,477,272	-				+0.9
2,477,272	-				+0.7
2,477,307	+				-1.1
2,477,365	-				+0.8
2,477,536	+		IAI47_11685	0.20	+0.7
2,477,536	+		IAI47_11685	0.20	-0.4
2,477,537	-		IAI47_11685	0.20	+0.6
2,477,537	-		IAI47_11685	0.20	+1.3
2,477,550	-		IAI47_11685	0.22	+1.5
2,477,550	-		IAI47_11685	0.22	-0.4
2,477,618	+		IAI47_11685	0.27	+1.3
2,477,618	+		IAI47_11685	0.27	+0.7
2,477,618	+		IAI47_11685	0.27	-0.3
2,477,618	+		IAI47_11685	0.27	-0.1
2,477,618	+		IAI47_11685	0.27	+0.3
2,477,619	-		IAI47_11685	0.27	-0.6
2,477,619	-		IAI47_11685	0.27	-0.3
2,477,619	-		IAI47_11685	0.27	+3.0
2,477,677	+		IAI47_11685	0.32	+0.1
2,477,677	+		IAI47_11685	0.32	+2.1
2,477,677	+		IAI47_11685	0.32	-0.3
2,477,678	-		IAI47_11685	0.32	+0.1
2,477,678	-		IAI47_11685	0.32	+0.3
2,477,683	-		IAI47_11685	0.32	+0.7
2,477,701	+		IAI47_11685	0.34	-0.7
2,477,701	+		IAI47_11685	0.34	+1.8
2,477,701	+		IAI47_11685	0.34	+0.7
2,477,813	+		IAI47_11685	0.43	-0.6
2,477,813	+		IAI47_11685	0.43	-0.3
2,477,814	-		IAI47_11685	0.43	+0.5
2,477,814	-		IAI47_11685	0.43	-0.4
2,477,814	-		IAI47_11685	0.43	+0.9
2,477,840	+		IAI47_11685	0.45	-0.1
2,477,841	-		IAI47_11685	0.45	+0.0
2,477,841	-		IAI47_11685	0.45	-0.1
2,477,841	-		IAI47_11685	0.45	+0.3
2,477,841	-		IAI47_11685	0.45	+1.1
2,477,868	+		IAI47_11685	0.47	+0.9
2,477,870	+		IAI47_11685	0.47	+0.6
2,477,870	+		IAI47_11685	0.47	-0.1
2,477,870	+		IAI47_11685	0.47	+1.3
2,477,870	+		IAI47_11685	0.47	+0.7
2,477,870	+		IAI47_11685	0.47	+0.1
2,477,870	+		IAI47_11685	0.47	-2.4
2,477,871	-		IAI47_11685	0.47	+0.5
2,477,871	-		IAI47_11685	0.47	-0.3
2,477,871	-		IAI47_11685	0.47	-0.6
2,477,871	-		IAI47_11685	0.47	-0.9
2,477,871	-		IAI47_11685	0.47	+0.4
2,477,987	+		IAI47_11685	0.57	+3.0
2,478,104	+		IAI47_11685	0.66	+0.8
2,478,104	+		IAI47_11685	0.66	+1.1
2,478,104	+		IAI47_11685	0.66	+0.7
2,478,105	-		IAI47_11685	0.66	+0.9
2,478,105	-		IAI47_11685	0.66	+1.1
2,478,105	-		IAI47_11685	0.66	+1.0
2,478,160	+		IAI47_11685	0.71	+0.7
2,478,160	+		IAI47_11685	0.71	-0.7
2,478,160	+		IAI47_11685	0.71	+1.6
2,478,212	-		IAI47_11685	0.75	+0.6
2,478,445	-				+0.9
2,478,532	+				-1.6
2,478,538	+				+0.7
2,478,541	+				-0.3
2,478,542	-				-0.2
2,478,642	+				+0.4
2,478,642	+				-0.8
2,478,643	-				+1.7
2,478,643	-				-1.1
2,478,643	-				+0.7
2,478,656	+				-1.6
2,478,657	-				+1.0
2,478,657	-				+0.1
2,478,670	+				-2.1
2,478,670	+				+0.1
2,478,670	+				+0.4
2,478,671	-				+1.1
2,478,671	-				-2.1
2,478,677	-		IAI47_11690	0.10	+0.6
2,478,810	+		IAI47_11690	0.20	+0.3
2,478,837	+		IAI47_11690	0.22	-0.1
2,478,838	-		IAI47_11690	0.22	-1.9
2,478,883	-		IAI47_11690	0.26	+0.7
2,478,989	+		IAI47_11690	0.33	-0.0
2,478,990	-		IAI47_11690	0.34	+0.1
2,478,990	-		IAI47_11690	0.34	+0.3
2,479,018	+		IAI47_11690	0.36	-0.4
2,479,019	-		IAI47_11690	0.36	+0.1
2,479,091	+		IAI47_11690	0.41	-0.9
2,479,092	-		IAI47_11690	0.41	-0.1
2,479,094	-		IAI47_11690	0.41	+0.7
2,479,094	-		IAI47_11690	0.41	-0.8
2,479,094	-		IAI47_11690	0.41	-0.3
2,479,094	-		IAI47_11690	0.41	-0.4
2,479,175	+		IAI47_11690	0.47	+0.3
2,479,176	-		IAI47_11690	0.47	-0.5
2,479,187	+		IAI47_11690	0.48	+0.7
2,479,187	+		IAI47_11690	0.48	+0.7
2,479,188	-		IAI47_11690	0.48	-0.1
2,479,188	-		IAI47_11690	0.48	-0.1
2,479,271	+		IAI47_11690	0.55	+1.2
2,479,272	-		IAI47_11690	0.55	+1.1
2,479,272	-		IAI47_11690	0.55	+0.6
2,479,324	+		IAI47_11690	0.58	+0.3
2,479,325	-		IAI47_11690	0.59	+1.3
2,479,325	-		IAI47_11690	0.59	-0.1
2,479,325	-		IAI47_11690	0.59	+1.0
2,479,511	-		IAI47_11690	0.72	-0.2
2,479,511	-		IAI47_11690	0.72	-0.2
2,479,511	-		IAI47_11690	0.72	+0.0