Strain Fitness in Pantoea sp. MT58 around IAI47_10910

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
2,303,301	+		IAI47_10905	0.77	+0.0
2,303,301	+		IAI47_10905	0.77	-1.6
2,303,302	-		IAI47_10905	0.77	-2.1
2,303,302	-		IAI47_10905	0.77	-1.1
2,303,319	+		IAI47_10905	0.78	-0.1
2,303,326	+		IAI47_10905	0.78	-1.2
2,303,326	+		IAI47_10905	0.78	-1.3
2,303,326	+		IAI47_10905	0.78	-1.4
2,303,326	+		IAI47_10905	0.78	+0.1
2,303,327	-		IAI47_10905	0.78	-1.4
2,303,338	+		IAI47_10905	0.79	-1.1
2,303,338	+		IAI47_10905	0.79	-0.9
2,303,387	-		IAI47_10905	0.81	-4.0
2,303,440	+		IAI47_10905	0.83	-2.0
2,303,441	-		IAI47_10905	0.83	+0.7
2,303,441	-		IAI47_10905	0.83	-1.7
2,303,508	+		IAI47_10905	0.86	-1.5
2,303,508	+		IAI47_10905	0.86	-1.3
2,303,508	+		IAI47_10905	0.86	-1.5
2,303,509	-		IAI47_10905	0.86	+0.1
2,303,509	-		IAI47_10905	0.86	-2.3
2,303,509	-		IAI47_10905	0.86	-3.2
2,303,635	-				-3.2
2,303,635	-				-1.0
2,303,675	-				-1.9
2,303,675	-				-0.6
2,303,682	+				-0.3
2,303,682	+				-0.9
2,303,682	+				-1.9
2,303,682	+				-0.9
2,303,682	+				-1.6
2,303,683	-				-0.6
2,303,683	-				-1.6
2,303,683	-				-1.1
2,303,683	-				-0.7
2,303,683	-				-0.5
2,303,683	-				-2.5
2,303,709	-				-0.6
2,303,734	+				-1.6
2,303,734	+				+0.0
2,303,735	-				+0.1
2,303,735	-				-1.0
2,303,737	+				-0.9
2,303,737	+				+0.7
2,303,765	-				-2.4
2,303,791	+				-0.9
2,303,791	+				-1.7
2,303,791	+				-0.3
2,303,792	-				-1.5
2,303,792	-				-0.3
2,303,792	-				-2.2
2,303,805	+				-1.4
2,303,806	-				-1.2
2,303,806	-				-1.6
2,303,806	-				-1.3
2,303,806	-				-3.2
2,303,806	-				-0.9
2,303,856	+				+0.1
2,303,857	-				+0.7
2,303,863	+				-0.9
2,303,864	-				-0.2
2,303,864	-				-1.2
2,303,864	-				-1.4
2,303,864	-				-0.7
2,303,864	-				-0.8
2,303,887	+				-2.2
2,303,887	+				+0.1
2,303,887	+				-0.3
2,303,887	+				-1.3
2,303,888	-				+0.3
2,303,888	-				+0.7
2,303,888	-				+0.1
2,303,888	-				-1.4
2,303,907	+				-0.0
2,303,907	+				-1.1
2,303,907	+				-0.9
2,303,907	+				-0.7
2,303,907	+				-1.2
2,303,908	-				+0.4
2,303,908	-				-0.3
2,303,922	-				-0.1
2,303,922	-				+0.4
2,303,922	-				-0.1
2,303,922	-				+0.2
2,304,006	+				+0.5
2,304,017	-				-0.7
2,304,058	+				-0.5
2,304,058	+				+0.2
2,304,059	-				+3.4
2,304,059	-				-1.3
2,304,094	+				+0.4
2,304,094	+				+0.3
2,304,095	-				-1.7
2,304,105	+				+1.0
2,304,105	+				+1.5
2,304,106	-				-0.7
2,304,106	-				-0.1
2,304,106	-				+0.4
2,304,106	-				-2.5
2,304,106	-				+0.2
2,304,108	+				+0.3
2,304,108	+				-1.4
2,304,116	+				-0.3
2,304,146	+				+0.7
2,304,157	+				-1.1
2,304,157	+				-2.6
2,304,158	-				+0.2
2,304,198	-				+1.1
2,304,206	+				+1.0
2,304,223	+				+0.3
2,304,245	+				+0.1
2,304,273	+				+0.5
2,304,273	+				+0.4
2,304,273	+				-0.5
2,304,273	+				+1.4
2,304,273	+				-0.9
2,304,274	-				-0.3
2,304,274	-				+0.7
2,304,274	-				-1.4
2,304,274	-				-0.3
2,304,274	-				+0.7
2,304,274	-				+0.1
2,304,278	+				+1.1
2,304,278	+				-1.0
2,304,303	+				-0.6
2,304,304	-				-0.5
2,304,317	+				-0.6
2,304,318	-				-0.8
2,304,318	-				-0.3
2,304,326	+				-0.5
2,304,327	-				-0.4
2,304,338	-				-0.2
2,304,374	+		IAI47_10910	0.11	+1.1
2,304,374	+		IAI47_10910	0.11	-0.9
2,304,374	+		IAI47_10910	0.11	-0.3
2,304,375	-		IAI47_10910	0.12	+0.1
2,304,375	-		IAI47_10910	0.12	+0.5
2,304,375	-		IAI47_10910	0.12	-0.2
2,304,440	+		IAI47_10910	0.19	-0.4
2,304,441	-		IAI47_10910	0.20	-1.6
2,304,450	+		IAI47_10910	0.21	+1.5
2,304,546	-		IAI47_10910	0.32	-0.5
2,304,615	-		IAI47_10910	0.41	-0.0
2,304,615	-		IAI47_10910	0.41	+0.7
2,304,636	-		IAI47_10910	0.43	+1.0
2,304,644	+		IAI47_10910	0.44	-0.6
2,304,644	+		IAI47_10910	0.44	+0.4
2,304,648	+		IAI47_10910	0.45	+0.9
2,304,648	+		IAI47_10910	0.45	-0.3
2,304,648	+		IAI47_10910	0.45	-0.6
2,304,648	+		IAI47_10910	0.45	-0.3
2,304,648	+		IAI47_10910	0.45	-0.8
2,304,648	+		IAI47_10910	0.45	-0.6
2,304,648	+		IAI47_10910	0.45	-0.9
2,304,648	+		IAI47_10910	0.45	-0.9
2,304,649	-		IAI47_10910	0.45	+2.7
2,304,649	-		IAI47_10910	0.45	-0.7
2,304,649	-		IAI47_10910	0.45	+0.2
2,304,649	-		IAI47_10910	0.45	+0.2
2,304,649	-		IAI47_10910	0.45	+0.5
2,304,649	-		IAI47_10910	0.45	-0.1
2,304,659	+		IAI47_10910	0.46	+1.6
2,304,659	+		IAI47_10910	0.46	+0.0
2,304,660	-		IAI47_10910	0.46	-0.8
2,304,675	+		IAI47_10910	0.48	+0.0
2,304,699	-		IAI47_10910	0.51	-1.2
2,304,699	-		IAI47_10910	0.51	+0.7
2,304,777	+		IAI47_10910	0.60	-0.4
2,304,778	-		IAI47_10910	0.60	-1.0
2,304,778	-		IAI47_10910	0.60	-0.6
2,304,778	-		IAI47_10910	0.60	+1.2
2,304,778	-		IAI47_10910	0.60	-0.4
2,304,814	-		IAI47_10910	0.65	-0.3
2,304,839	+		IAI47_10910	0.68	-0.1
2,304,840	-		IAI47_10910	0.68	-0.4
2,304,878	+		IAI47_10910	0.72	-1.3
2,304,878	+		IAI47_10910	0.72	-0.1
2,304,878	+		IAI47_10910	0.72	+0.8
2,304,878	+		IAI47_10910	0.72	+0.7
2,304,878	+		IAI47_10910	0.72	-0.8
2,304,879	-		IAI47_10910	0.72	-1.3
2,304,897	-		IAI47_10910	0.75	-0.6
2,304,897	-		IAI47_10910	0.75	+1.6
2,304,922	+		IAI47_10910	0.78	-0.5
2,304,922	+		IAI47_10910	0.78	+1.7
2,304,944	+		IAI47_10910	0.80	-0.3
2,304,992	-		IAI47_10910	0.86	-0.1
2,305,023	+		IAI47_10910	0.90	-0.7
2,305,024	-				-0.3
2,305,024	-				-1.9
2,305,041	+				+0.3
2,305,042	-				-0.3
2,305,101	+				+0.7
2,305,101	+				+1.0
2,305,101	+				-0.4
2,305,101	+				-0.7
2,305,101	+				-0.4
2,305,101	+				+0.7
2,305,102	-				-1.3
2,305,102	-				-0.4
2,305,113	+				-0.3
2,305,114	-				+1.2
2,305,129	+				+0.3
2,305,130	-				-0.3
2,305,197	+				-0.4
2,305,197	+				+0.7
2,305,297	+				+0.0
2,305,298	-				+1.9
2,305,298	-				+0.6
2,305,298	-				-0.1
2,305,298	-				-0.2
2,305,298	-				+1.0
2,305,298	-				-0.8
2,305,298	-				+0.3
2,305,298	-				+0.8
2,305,306	+				-0.3
2,305,307	-				+1.1
2,305,381	+		IAI47_10915	0.12	+1.7
2,305,381	+		IAI47_10915	0.12	+1.0
2,305,381	+		IAI47_10915	0.12	+1.7
2,305,381	+		IAI47_10915	0.12	+0.5
2,305,382	-		IAI47_10915	0.12	+1.3
2,305,382	-		IAI47_10915	0.12	+0.4
2,305,382	-		IAI47_10915	0.12	+0.6
2,305,382	-		IAI47_10915	0.12	+0.4
2,305,382	-		IAI47_10915	0.12	-0.3
2,305,382	-		IAI47_10915	0.12	+0.2
2,305,382	-		IAI47_10915	0.12	-1.6
2,305,384	-		IAI47_10915	0.12	-0.0
2,305,384	-		IAI47_10915	0.12	+0.5
2,305,390	+		IAI47_10915	0.13	-0.3
2,305,391	-		IAI47_10915	0.13	-0.3
2,305,391	-		IAI47_10915	0.13	+1.7
2,305,469	+		IAI47_10915	0.20	+0.2
2,305,469	+		IAI47_10915	0.20	-0.5
2,305,469	+		IAI47_10915	0.20	+0.5
2,305,470	-		IAI47_10915	0.20	-1.4
2,305,470	-		IAI47_10915	0.20	+0.5
2,305,502	+		IAI47_10915	0.23	+1.5
2,305,502	+		IAI47_10915	0.23	+0.7
2,305,535	+		IAI47_10915	0.26	+0.5
2,305,536	-		IAI47_10915	0.26	+1.2
2,305,536	-		IAI47_10915	0.26	+0.4
2,305,536	-		IAI47_10915	0.26	-0.6
2,305,575	+		IAI47_10915	0.30	+1.5
2,305,575	+		IAI47_10915	0.30	+0.2
2,305,576	-		IAI47_10915	0.30	+0.6
2,305,604	+		IAI47_10915	0.33	+0.1
2,305,604	+		IAI47_10915	0.33	+0.1
2,305,604	+		IAI47_10915	0.33	+0.1
2,305,604	+		IAI47_10915	0.33	+1.4
2,305,611	+		IAI47_10915	0.34	+0.7
2,305,611	+		IAI47_10915	0.34	+0.4
2,305,611	+		IAI47_10915	0.34	+0.7
2,305,651	+		IAI47_10915	0.37	-0.2
2,305,811	-		IAI47_10915	0.53	-0.7
2,305,811	-		IAI47_10915	0.53	+1.3
2,305,876	+		IAI47_10915	0.59	+2.3
2,305,876	+		IAI47_10915	0.59	+0.4
2,305,876	+		IAI47_10915	0.59	-1.0
2,305,876	+		IAI47_10915	0.59	+0.5
2,305,876	+		IAI47_10915	0.59	-0.4
2,305,876	+		IAI47_10915	0.59	+0.4
2,305,876	+		IAI47_10915	0.59	-0.1
2,305,876	+		IAI47_10915	0.59	+1.8
2,305,877	-		IAI47_10915	0.59	+0.7
2,305,877	-		IAI47_10915	0.59	-0.8
2,305,877	-		IAI47_10915	0.59	-1.6
2,305,877	-		IAI47_10915	0.59	-0.0
2,305,877	-		IAI47_10915	0.59	-0.3
2,305,877	-		IAI47_10915	0.59	-1.9
2,305,877	-		IAI47_10915	0.59	+0.7
2,305,916	+		IAI47_10915	0.63	+0.4
2,305,916	+		IAI47_10915	0.63	-0.7
2,305,916	+		IAI47_10915	0.63	+0.4
2,305,972	+		IAI47_10915	0.68	-0.0
2,305,972	+		IAI47_10915	0.68	+0.4
2,305,972	+		IAI47_10915	0.68	+1.5
2,305,972	+		IAI47_10915	0.68	+1.4
2,305,972	+		IAI47_10915	0.68	-0.9
2,305,972	+		IAI47_10915	0.68	-0.9
2,305,972	+		IAI47_10915	0.68	+0.7
2,305,973	-		IAI47_10915	0.68	-0.7
2,305,973	-		IAI47_10915	0.68	-0.7
2,305,973	-		IAI47_10915	0.68	-0.2
2,305,973	-		IAI47_10915	0.68	+1.2
2,305,976	+		IAI47_10915	0.68	+0.1
2,305,976	+		IAI47_10915	0.68	+0.4
2,305,976	+		IAI47_10915	0.68	+0.2
2,305,976	+		IAI47_10915	0.68	-0.2
2,305,976	+		IAI47_10915	0.68	+0.1
2,305,976	+		IAI47_10915	0.68	+2.3
2,305,976	+		IAI47_10915	0.68	-0.1
2,305,976	+		IAI47_10915	0.68	+0.7
2,305,976	+		IAI47_10915	0.68	-0.6
2,305,976	+		IAI47_10915	0.68	+0.3
2,305,977	-		IAI47_10915	0.69	-0.1
2,305,977	-		IAI47_10915	0.69	-0.9
2,305,977	-		IAI47_10915	0.69	+0.2
2,305,977	-		IAI47_10915	0.69	+0.7
2,305,977	-		IAI47_10915	0.69	+0.9
2,305,977	-		IAI47_10915	0.69	-0.2
2,305,977	-		IAI47_10915	0.69	+0.4
2,305,977	-		IAI47_10915	0.69	+0.2
2,306,023	+		IAI47_10915	0.73	+0.6