Strain Fitness in Pantoea sp. MT58 around IAI47_07525

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
1,586,508	+		IAI47_07520	0.88	+1.2
1,586,526	-		IAI47_07520	0.89	+0.9
1,586,535	+		IAI47_07520	0.89	+0.1
1,586,535	+		IAI47_07520	0.89	-0.5
1,586,578	+				+0.5
1,586,578	+				-0.8
1,586,578	+				-1.4
1,586,579	-				-0.5
1,586,579	-				-1.3
1,586,623	+				+0.1
1,586,697	-				+0.7
1,586,722	+				+0.5
1,586,723	-				+0.7
1,586,759	-				-1.1
1,586,824	+				-0.3
1,586,849	-				-0.7
1,586,876	+				-0.6
1,586,876	+				-0.9
1,586,876	+				+0.3
1,586,877	-				-0.1
1,586,877	-				+0.2
1,586,877	-				-0.5
1,586,878	+				-0.4
1,586,878	+				-0.8
1,586,878	+				-0.6
1,586,878	+				+0.5
1,586,879	+				-0.1
1,586,879	-				+0.3
1,586,879	-				+0.2
1,586,997	+				-0.1
1,587,011	+				-1.0
1,587,015	-				+0.3
1,587,054	+				+0.7
1,587,222	+				+0.1
1,587,288	+				+0.1
1,587,340	-				-0.3
1,587,355	+				+0.4
1,587,499	-				-0.8
1,587,517	+				-1.8
1,587,660	+		IAI47_07525	0.50	-0.8
1,587,664	+		IAI47_07525	0.52	-0.3
1,587,665	-		IAI47_07525	0.52	-0.3
1,587,670	+		IAI47_07525	0.54	+0.0
1,587,680	-		IAI47_07525	0.57	+0.0
1,587,718	+		IAI47_07525	0.69	+0.0
1,587,723	+		IAI47_07525	0.71	+0.2
1,587,723	+		IAI47_07525	0.71	-0.3
1,587,740	-		IAI47_07525	0.76	+0.3
1,587,823	+				-0.1
1,587,841	-				-0.8
1,587,843	-				-1.4
1,587,895	+				+1.5
1,587,988	+				-0.1
1,588,006	-				+0.7
1,588,058	+				+0.1
1,588,119	-				-0.3
1,588,187	+				+0.3
1,588,188	-				-1.1
1,588,189	+				+0.0
1,588,189	+				+0.1
1,588,245	-				-0.5
1,588,248	+				-1.3
1,588,248	+				+0.3
1,588,249	-				+0.5
1,588,432	+				+2.7
1,588,482	+				+0.4
1,588,532	+				-0.3
1,588,533	-				+0.4
1,588,551	-				-0.8
1,588,613	-				-0.1
1,588,664	+		IAI47_07530	0.12	+0.3
1,588,723	-		IAI47_07530	0.14	-0.3
1,588,810	-		IAI47_07530	0.17	-1.6