Strain Fitness in Pantoea sp. MT58 around IAI47_06475

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
1,324,410	+		IAI47_06470	0.70	+0.4
1,324,410	+		IAI47_06470	0.70	-0.6
1,324,410	+		IAI47_06470	0.70	-2.0
1,324,411	-		IAI47_06470	0.70	-0.9
1,324,465	-		IAI47_06470	0.72	+0.2
1,324,473	+		IAI47_06470	0.72	-1.9
1,324,473	+		IAI47_06470	0.72	-1.7
1,324,474	-		IAI47_06470	0.72	-1.9
1,324,474	-		IAI47_06470	0.72	+0.3
1,324,483	+		IAI47_06470	0.73	-1.0
1,324,483	+		IAI47_06470	0.73	+1.3
1,324,523	+		IAI47_06470	0.74	-0.1
1,324,523	+		IAI47_06470	0.74	+0.1
1,324,523	+		IAI47_06470	0.74	+0.1
1,324,523	+		IAI47_06470	0.74	+2.5
1,324,531	-		IAI47_06470	0.74	+1.2
1,324,562	-		IAI47_06470	0.75	+1.3
1,324,611	-		IAI47_06470	0.77	+0.7
1,324,618	+		IAI47_06470	0.77	+2.1
1,324,621	-		IAI47_06470	0.77	-0.5
1,324,626	+		IAI47_06470	0.78	+0.7
1,324,723	-		IAI47_06470	0.81	-0.4
1,324,805	-		IAI47_06470	0.84	+2.1
1,324,875	+		IAI47_06470	0.86	+1.3
1,324,876	-		IAI47_06470	0.86	+0.7
1,324,914	+		IAI47_06470	0.88	+0.1
1,324,914	+		IAI47_06470	0.88	+2.7
1,324,914	+		IAI47_06470	0.88	+0.6
1,324,914	+		IAI47_06470	0.88	+0.7
1,324,915	-		IAI47_06470	0.88	-0.9
1,324,915	-		IAI47_06470	0.88	+0.1
1,324,915	-		IAI47_06470	0.88	-0.3
1,325,010	+				+3.1
1,325,010	+				-1.3
1,325,010	+				+0.7
1,325,044	-				-0.1
1,325,044	-				-0.7
1,325,044	-				+0.9
1,325,082	-				+2.3
1,325,082	-				+0.4
1,325,154	+				-0.1
1,325,154	+				-1.4
1,325,154	+				+0.0
1,325,154	+				+0.7
1,325,154	+				+0.7
1,325,155	-				+1.3
1,325,155	-				+0.4
1,325,166	+				-0.4
1,325,167	-				-0.3
1,325,167	-				-1.6
1,325,172	+				+0.3
1,325,172	+				-0.7
1,325,173	-				-1.9
1,325,198	+				-0.5
1,325,198	+				-0.9
1,325,198	+				-0.3
1,325,227	+				+0.7
1,325,227	+				-0.3
1,325,227	+				-0.3
1,325,227	+				-1.0
1,325,227	+				-0.6
1,325,227	+				+0.0
1,325,228	-				-0.5
1,325,228	-				+0.8
1,325,316	+				-0.5
1,325,316	+				-0.3
1,325,316	+				-0.6
1,325,316	+				+1.6
1,325,316	+				+2.7
1,325,316	+				+0.1
1,325,317	-				-0.9
1,325,317	-				+1.0
1,325,317	-				-0.9
1,325,317	-				+2.3
1,325,317	-				-0.5
1,325,317	-				+1.1
1,325,317	-				-0.7
1,325,317	-				+0.1
1,325,317	-				-0.5
1,325,355	+				-1.6
1,325,355	+				-1.6
1,325,356	-				-0.9
1,325,356	-				-0.7
1,325,432	-		IAI47_06475	0.18	-1.7
1,325,432	-		IAI47_06475	0.18	-1.3
1,325,529	+		IAI47_06475	0.33	-0.3
1,325,619	-		IAI47_06475	0.47	+0.1
1,325,696	-		IAI47_06475	0.59	-2.4
1,325,716	+		IAI47_06475	0.62	-0.9
1,325,716	+		IAI47_06475	0.62	-0.3
1,325,716	+		IAI47_06475	0.62	-0.6
1,325,717	-				-0.9
1,325,717	-		IAI47_06475	0.62	+0.4
1,325,747	-		IAI47_06475	0.66	-1.9
1,325,748	+		IAI47_06475	0.67	-0.3
1,325,752	+		IAI47_06475	0.67	-0.6
1,325,752	+		IAI47_06475	0.67	-0.9
1,325,761	+		IAI47_06475	0.69	-0.3
1,325,762	-		IAI47_06475	0.69	-1.6
1,325,762	-		IAI47_06475	0.69	+0.7
1,325,762	-		IAI47_06475	0.69	-0.3
1,325,762	-		IAI47_06475	0.69	-1.7
1,325,762	-		IAI47_06475	0.69	-3.4
1,325,762	-		IAI47_06475	0.69	-2.3
1,325,764	+		IAI47_06475	0.69	-1.7
1,325,765	-		IAI47_06475	0.69	+0.1
1,325,776	-		IAI47_06475	0.71	+0.7
1,325,791	+		IAI47_06475	0.73	-1.0
1,325,791	+		IAI47_06475	0.73	-0.9
1,325,791	+		IAI47_06475	0.73	-2.4
1,325,791	+		IAI47_06475	0.73	-1.6
1,325,836	+		IAI47_06475	0.80	-3.5
1,325,837	-		IAI47_06475	0.80	+0.7
1,325,837	-		IAI47_06475	0.80	-0.3
1,325,837	-		IAI47_06475	0.80	-0.3
1,325,870	+		IAI47_06475	0.85	-1.3
1,325,870	+		IAI47_06475	0.85	-1.6
1,325,871	-		IAI47_06475	0.85	-1.6
1,325,871	-		IAI47_06475	0.85	-1.9
1,325,955	-				+0.2
1,325,959	+				-2.0
1,325,959	+				-0.3
1,325,968	+				-3.0
1,325,969	-				-1.6
1,325,976	-				-0.0
1,326,001	+				+0.3
1,326,001	+				-1.3
1,326,001	+				-0.9
1,326,001	+				-0.9
1,326,002	-				+0.2
1,326,002	-				+2.1
1,326,012	-				+0.9
1,326,012	-				-0.3
1,326,023	+				-2.2
1,326,023	+				-1.6
1,326,029	+				-0.9
1,326,030	-				-0.7
1,326,030	-				-0.9
1,326,030	-				-0.5
1,326,053	+				-0.3
1,326,053	+				-0.3
1,326,053	+				-1.6
1,326,054	-				+1.0
1,326,067	-				-0.7
1,326,067	-				+0.4
1,326,124	-				+0.9
1,326,154	+				-0.9
1,326,155	-				+0.7
1,326,177	-				+0.7
1,326,177	-				+0.7
1,326,178	+				-0.9
1,326,178	+				-1.7
1,326,178	+				-2.3
1,326,178	+				-3.1
1,326,179	-				+0.4
1,326,179	-				-0.3
1,326,179	-				+0.7
1,326,179	-				+0.4
1,326,179	-				-0.3
1,326,180	-				+0.3
1,326,201	+				-2.4
1,326,241	-		IAI47_06480	0.10	-0.4
1,326,336	-		IAI47_06480	0.14	+0.3
1,326,423	-		IAI47_06480	0.17	+0.7
1,326,533	+		IAI47_06480	0.21	-1.3
1,326,534	-		IAI47_06480	0.21	+0.6
1,326,534	-		IAI47_06480	0.21	+1.0
1,326,538	-		IAI47_06480	0.21	+2.5
1,326,538	-		IAI47_06480	0.21	-0.9
1,326,538	-		IAI47_06480	0.21	-0.4
1,326,638	+		IAI47_06480	0.25	+1.7
1,326,639	-		IAI47_06480	0.25	+0.7
1,326,639	-		IAI47_06480	0.25	+2.7
1,326,640	+		IAI47_06480	0.25	-1.1
1,326,641	-		IAI47_06480	0.25	+0.6
1,326,641	-		IAI47_06480	0.25	-0.6
1,326,641	-		IAI47_06480	0.25	-0.1
1,326,707	+		IAI47_06480	0.28	+0.7
1,326,707	+		IAI47_06480	0.28	-1.0
1,326,707	+		IAI47_06480	0.28	+1.7
1,326,708	-		IAI47_06480	0.28	+0.4
1,326,708	-		IAI47_06480	0.28	-0.5
1,326,742	+		IAI47_06480	0.29	-0.9
1,326,866	+		IAI47_06480	0.34	+1.3
1,326,867	-		IAI47_06480	0.34	+1.3
1,326,910	+		IAI47_06480	0.35	+1.1
1,326,911	-		IAI47_06480	0.36	+0.7