Strain Fitness in Pantoea sp. MT58 around IAI47_06390

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
1,300,781	-		IAI47_06385	0.70	-0.8
1,300,988	+		IAI47_06385	0.78	-1.8
1,300,989	-		IAI47_06385	0.78	-2.3
1,300,993	-		IAI47_06385	0.78	-1.6
1,300,993	-		IAI47_06385	0.78	-3.0
1,301,216	+		IAI47_06385	0.86	-1.3
1,301,559	+				-1.6
1,301,795	+		IAI47_06390	0.21	-1.8
1,301,819	+		IAI47_06390	0.24	-0.3
1,301,820	-		IAI47_06390	0.24	-1.8
1,301,831	+		IAI47_06390	0.25	-0.8
1,301,885	+		IAI47_06390	0.30	-0.3
1,301,970	+		IAI47_06390	0.39	-3.2
1,302,054	+		IAI47_06390	0.48	-1.3
1,302,188	+				+0.7
1,302,313	-		IAI47_06390	0.74	-1.8
1,302,313	-		IAI47_06390	0.74	-2.3
1,302,422	+		IAI47_06390	0.85	-0.8
1,302,423	-		IAI47_06390	0.85	-0.3
1,302,423	-		IAI47_06390	0.85	-0.3
1,302,592	+				-0.3
1,302,601	-				+0.7
1,302,625	+				-1.3
1,302,626	-				+0.7
1,302,799	+		IAI47_06395	0.41	-0.3
1,302,971	+		IAI47_06395	0.72	-0.3
1,302,971	+		IAI47_06395	0.72	-2.3
1,302,971	+		IAI47_06395	0.72	-1.6
1,303,043	-				+0.7
1,303,063	+		IAI47_06395	0.89	-2.3
1,303,093	+				-1.3
1,303,110	+				-0.4
1,303,110	+				-0.6
1,303,110	+				-0.4
1,303,110	+				-1.3
1,303,110	+				+0.5
1,303,113	+				-0.4
1,303,113	+				-2.1
1,303,113	+				-0.2
1,303,118	+				-0.1
1,303,146	+				-1.8
1,303,275	+		IAI47_06400	0.26	-1.3
1,303,276	-		IAI47_06400	0.26	-3.0
1,303,343	+		IAI47_06400	0.38	-0.8
1,303,456	-		IAI47_06400	0.59	-1.6
1,303,539	+		IAI47_06400	0.74	-1.6
1,303,539	+		IAI47_06400	0.74	-0.3
1,303,540	-		IAI47_06400	0.74	-1.3
1,303,565	+		IAI47_06400	0.79	-1.6
1,303,566	-		IAI47_06400	0.79	+0.2