Strain Fitness in Pantoea sp. MT58 around IAI47_06265

Experiment: Ying_AminoAcid20 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_06260 and IAI47_06265 overlap by 11 nucleotidesIAI47_06265 and IAI47_06270 are separated by 265 nucleotidesIAI47_06270 and IAI47_06275 are separated by 37 nucleotides IAI47_06260: IAI47_06260 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 1,272,952 to 1,274,220 _06260 IAI47_06265: IAI47_06265 - cell division protein DedD, at 1,274,210 to 1,274,992 _06265 IAI47_06270: IAI47_06270 - colicin V production protein, at 1,275,258 to 1,275,743 _06270 IAI47_06275: IAI47_06275 - amidophosphoribosyltransferase, at 1,275,781 to 1,277,298 _06275 Position (kb) 1274 1275Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1274.218 kb on + strandat 1274.218 kb on + strandat 1274.218 kb on + strandat 1274.235 kb on + strandat 1274.248 kb on + strandat 1274.248 kb on + strandat 1274.309 kb on + strand, within IAI47_06265at 1274.309 kb on + strand, within IAI47_06265at 1274.309 kb on + strand, within IAI47_06265at 1274.443 kb on + strand, within IAI47_06265at 1274.443 kb on + strand, within IAI47_06265at 1274.444 kb on - strand, within IAI47_06265at 1274.449 kb on + strand, within IAI47_06265at 1274.449 kb on + strand, within IAI47_06265at 1274.450 kb on - strand, within IAI47_06265at 1274.450 kb on - strand, within IAI47_06265at 1274.450 kb on - strand, within IAI47_06265at 1274.452 kb on + strand, within IAI47_06265at 1274.452 kb on + strand, within IAI47_06265at 1274.452 kb on + strand, within IAI47_06265at 1274.452 kb on + strand, within IAI47_06265at 1274.453 kb on - strand, within IAI47_06265at 1274.503 kb on + strand, within IAI47_06265at 1274.504 kb on - strand, within IAI47_06265at 1274.596 kb on + strand, within IAI47_06265at 1274.597 kb on - strand, within IAI47_06265at 1274.597 kb on - strand, within IAI47_06265at 1274.614 kb on + strand, within IAI47_06265at 1274.614 kb on + strand, within IAI47_06265at 1274.615 kb on - strand, within IAI47_06265at 1274.645 kb on - strand, within IAI47_06265at 1274.645 kb on - strand, within IAI47_06265at 1274.645 kb on - strand, within IAI47_06265at 1274.645 kb on - strand, within IAI47_06265at 1274.645 kb on - strand, within IAI47_06265at 1274.759 kb on + strand, within IAI47_06265at 1274.759 kb on + strand, within IAI47_06265at 1274.759 kb on + strand, within IAI47_06265at 1274.759 kb on + strand, within IAI47_06265at 1274.759 kb on + strand, within IAI47_06265at 1274.759 kb on + strand, within IAI47_06265at 1274.759 kb on + strand, within IAI47_06265at 1274.759 kb on + strand, within IAI47_06265at 1274.760 kb on - strand, within IAI47_06265at 1274.760 kb on - strand, within IAI47_06265at 1274.760 kb on - strand, within IAI47_06265at 1274.772 kb on + strand, within IAI47_06265at 1274.772 kb on + strand, within IAI47_06265at 1274.772 kb on + strand, within IAI47_06265at 1274.773 kb on - strand, within IAI47_06265at 1274.773 kb on - strand, within IAI47_06265at 1274.773 kb on - strand, within IAI47_06265at 1274.773 kb on - strand, within IAI47_06265at 1274.773 kb on - strand, within IAI47_06265at 1274.845 kb on + strand, within IAI47_06265at 1274.845 kb on + strand, within IAI47_06265at 1274.845 kb on + strand, within IAI47_06265at 1274.846 kb on - strand, within IAI47_06265at 1274.846 kb on - strand, within IAI47_06265at 1274.879 kb on - strand, within IAI47_06265at 1274.888 kb on + strand, within IAI47_06265at 1274.888 kb on + strand, within IAI47_06265at 1274.888 kb on + strand, within IAI47_06265at 1274.888 kb on + strand, within IAI47_06265at 1274.889 kb on - strand, within IAI47_06265at 1274.978 kb on + strandat 1274.978 kb on + strandat 1274.979 kb on - strandat 1275.015 kb on - strandat 1275.015 kb on - strandat 1275.020 kb on + strandat 1275.046 kb on + strandat 1275.070 kb on - strandat 1275.080 kb on + strandat 1275.152 kb on + strandat 1275.153 kb on - strandat 1275.201 kb on + strandat 1275.201 kb on + strandat 1275.201 kb on + strandat 1275.202 kb on - strandat 1275.202 kb on - strandat 1275.202 kb on - strandat 1275.273 kb on + strandat 1275.273 kb on + strandat 1275.273 kb on + strandat 1275.273 kb on + strandat 1275.273 kb on + strandat 1275.273 kb on + strandat 1275.273 kb on + strandat 1275.274 kb on - strandat 1275.274 kb on - strandat 1275.282 kb on - strandat 1275.289 kb on + strandat 1275.290 kb on - strandat 1275.290 kb on - strandat 1275.343 kb on + strand, within IAI47_06270at 1275.344 kb on - strand, within IAI47_06270at 1275.353 kb on + strand, within IAI47_06270at 1275.354 kb on - strand, within IAI47_06270at 1275.354 kb on - strand, within IAI47_06270at 1275.354 kb on - strand, within IAI47_06270at 1275.354 kb on - strand, within IAI47_06270at 1275.387 kb on + strand, within IAI47_06270at 1275.387 kb on + strand, within IAI47_06270at 1275.387 kb on + strand, within IAI47_06270at 1275.387 kb on + strand, within IAI47_06270at 1275.387 kb on + strand, within IAI47_06270at 1275.388 kb on - strand, within IAI47_06270at 1275.388 kb on - strand, within IAI47_06270at 1275.388 kb on - strand, within IAI47_06270at 1275.390 kb on + strand, within IAI47_06270at 1275.390 kb on + strand, within IAI47_06270at 1275.391 kb on - strand, within IAI47_06270at 1275.391 kb on - strand, within IAI47_06270at 1275.391 kb on - strand, within IAI47_06270at 1275.391 kb on - strand, within IAI47_06270at 1275.396 kb on + strand, within IAI47_06270at 1275.396 kb on + strand, within IAI47_06270at 1275.397 kb on - strand, within IAI47_06270at 1275.414 kb on - strand, within IAI47_06270at 1275.414 kb on - strand, within IAI47_06270at 1275.484 kb on + strand, within IAI47_06270at 1275.484 kb on + strand, within IAI47_06270at 1275.484 kb on + strand, within IAI47_06270at 1275.485 kb on - strand, within IAI47_06270at 1275.485 kb on - strand, within IAI47_06270at 1275.485 kb on - strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.501 kb on + strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.502 kb on - strand, within IAI47_06270at 1275.506 kb on + strand, within IAI47_06270at 1275.620 kb on + strand, within IAI47_06270at 1275.620 kb on + strand, within IAI47_06270at 1275.620 kb on + strand, within IAI47_06270at 1275.620 kb on + strand, within IAI47_06270at 1275.620 kb on + strand, within IAI47_06270at 1275.620 kb on + strand, within IAI47_06270at 1275.621 kb on - strand, within IAI47_06270at 1275.621 kb on - strand, within IAI47_06270at 1275.621 kb on - strand, within IAI47_06270at 1275.621 kb on - strand, within IAI47_06270at 1275.639 kb on - strand, within IAI47_06270at 1275.684 kb on + strand, within IAI47_06270at 1275.684 kb on + strand, within IAI47_06270at 1275.684 kb on + strand, within IAI47_06270at 1275.684 kb on + strand, within IAI47_06270at 1275.684 kb on + strand, within IAI47_06270at 1275.684 kb on + strand, within IAI47_06270at 1275.685 kb on - strand, within IAI47_06270at 1275.685 kb on - strand, within IAI47_06270at 1275.685 kb on - strand, within IAI47_06270at 1275.686 kb on + strand, within IAI47_06270at 1275.686 kb on + strand, within IAI47_06270at 1275.686 kb on + strand, within IAI47_06270at 1275.686 kb on + strand, within IAI47_06270at 1275.686 kb on + strand, within IAI47_06270at 1275.686 kb on + strand, within IAI47_06270at 1275.686 kb on + strand, within IAI47_06270at 1275.686 kb on + strand, within IAI47_06270at 1275.687 kb on - strand, within IAI47_06270at 1275.687 kb on - strand, within IAI47_06270at 1275.687 kb on - strand, within IAI47_06270at 1275.687 kb on - strand, within IAI47_06270at 1275.687 kb on - strand, within IAI47_06270at 1275.687 kb on - strand, within IAI47_06270at 1275.687 kb on - strand, within IAI47_06270at 1275.687 kb on - strand, within IAI47_06270at 1275.687 kb on - strand, within IAI47_06270at 1275.687 kb on - strand, within IAI47_06270at 1275.832 kb on + strandat 1275.832 kb on + strandat 1275.832 kb on + strandat 1275.832 kb on + strandat 1275.832 kb on + strandat 1275.833 kb on - strandat 1275.833 kb on - strandat 1275.885 kb on + strandat 1275.885 kb on + strandat 1275.886 kb on - strandat 1275.981 kb on + strand, within IAI47_06275at 1275.982 kb on - strand, within IAI47_06275at 1275.982 kb on - strand, within IAI47_06275

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2
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1,274,218 + +0.4
1,274,218 + -0.1
1,274,218 + +0.1
1,274,235 + +1.7
1,274,248 + +0.3
1,274,248 + +1.4
1,274,309 + IAI47_06265 0.13 +1.0
1,274,309 + IAI47_06265 0.13 -0.5
1,274,309 + IAI47_06265 0.13 +0.3
1,274,443 + IAI47_06265 0.30 +0.2
1,274,443 + IAI47_06265 0.30 +0.6
1,274,444 - IAI47_06265 0.30 -0.0
1,274,449 + IAI47_06265 0.31 +0.3
1,274,449 + IAI47_06265 0.31 -1.3
1,274,450 - IAI47_06265 0.31 +2.4
1,274,450 - IAI47_06265 0.31 +2.7
1,274,450 - IAI47_06265 0.31 -0.1
1,274,452 + IAI47_06265 0.31 +2.0
1,274,452 + IAI47_06265 0.31 +0.4
1,274,452 + IAI47_06265 0.31 +1.2
1,274,452 + IAI47_06265 0.31 +0.7
1,274,453 - IAI47_06265 0.31 -0.9
1,274,503 + IAI47_06265 0.37 -0.0
1,274,504 - IAI47_06265 0.38 +0.6
1,274,596 + IAI47_06265 0.49 -0.3
1,274,597 - IAI47_06265 0.49 -0.5
1,274,597 - IAI47_06265 0.49 -0.2
1,274,614 + IAI47_06265 0.52 -0.9
1,274,614 + IAI47_06265 0.52 +0.8
1,274,615 - IAI47_06265 0.52 +0.1
1,274,645 - IAI47_06265 0.56 +0.1
1,274,645 - IAI47_06265 0.56 +1.7
1,274,645 - IAI47_06265 0.56 -0.3
1,274,645 - IAI47_06265 0.56 +0.1
1,274,645 - IAI47_06265 0.56 -0.8
1,274,759 + IAI47_06265 0.70 +1.5
1,274,759 + IAI47_06265 0.70 +0.3
1,274,759 + IAI47_06265 0.70 -0.3
1,274,759 + IAI47_06265 0.70 +0.2
1,274,759 + IAI47_06265 0.70 +2.0
1,274,759 + IAI47_06265 0.70 -0.2
1,274,759 + IAI47_06265 0.70 +0.2
1,274,759 + IAI47_06265 0.70 -1.3
1,274,760 - IAI47_06265 0.70 +0.1
1,274,760 - IAI47_06265 0.70 +0.7
1,274,760 - IAI47_06265 0.70 +2.1
1,274,772 + IAI47_06265 0.72 -1.6
1,274,772 + IAI47_06265 0.72 -0.1
1,274,772 + IAI47_06265 0.72 +0.3
1,274,773 - IAI47_06265 0.72 +1.0
1,274,773 - IAI47_06265 0.72 +0.0
1,274,773 - IAI47_06265 0.72 +0.8
1,274,773 - IAI47_06265 0.72 +0.9
1,274,773 - IAI47_06265 0.72 -0.3
1,274,845 + IAI47_06265 0.81 +0.5
1,274,845 + IAI47_06265 0.81 -0.4
1,274,845 + IAI47_06265 0.81 +0.7
1,274,846 - IAI47_06265 0.81 +0.2
1,274,846 - IAI47_06265 0.81 +0.3
1,274,879 - IAI47_06265 0.85 +0.7
1,274,888 + IAI47_06265 0.87 +0.5
1,274,888 + IAI47_06265 0.87 -0.6
1,274,888 + IAI47_06265 0.87 -0.0
1,274,888 + IAI47_06265 0.87 -0.1
1,274,889 - IAI47_06265 0.87 -1.6
1,274,978 + +0.7
1,274,978 + +0.4
1,274,979 - +1.0
1,275,015 - -0.4
1,275,015 - +0.4
1,275,020 + +1.6
1,275,046 + -0.3
1,275,070 - +0.7
1,275,080 + -0.0
1,275,152 + +1.9
1,275,153 - -0.3
1,275,201 + +0.6
1,275,201 + -0.9
1,275,201 + -0.3
1,275,202 - -2.4
1,275,202 - -1.9
1,275,202 - -2.1
1,275,273 + -0.9
1,275,273 + -2.1
1,275,273 + -1.9
1,275,273 + -0.3
1,275,273 + -0.9
1,275,273 + +0.1
1,275,273 + +0.2
1,275,274 - -3.2
1,275,274 - -0.3
1,275,282 - -3.3
1,275,289 + -1.1
1,275,290 - -1.6
1,275,290 - -2.1
1,275,343 + IAI47_06270 0.17 -0.3
1,275,344 - IAI47_06270 0.18 -2.4
1,275,353 + IAI47_06270 0.20 +0.3
1,275,354 - IAI47_06270 0.20 -2.4
1,275,354 - IAI47_06270 0.20 -0.9
1,275,354 - IAI47_06270 0.20 -0.9
1,275,354 - IAI47_06270 0.20 -3.4
1,275,387 + IAI47_06270 0.27 +1.2
1,275,387 + IAI47_06270 0.27 +0.4
1,275,387 + IAI47_06270 0.27 -0.1
1,275,387 + IAI47_06270 0.27 -0.3
1,275,387 + IAI47_06270 0.27 +2.1
1,275,388 - IAI47_06270 0.27 -1.1
1,275,388 - IAI47_06270 0.27 -2.3
1,275,388 - IAI47_06270 0.27 -4.4
1,275,390 + IAI47_06270 0.27 +0.1
1,275,390 + IAI47_06270 0.27 -1.1
1,275,391 - IAI47_06270 0.27 -2.3
1,275,391 - IAI47_06270 0.27 -3.2
1,275,391 - IAI47_06270 0.27 -2.7
1,275,391 - IAI47_06270 0.27 -3.4
1,275,396 + IAI47_06270 0.28 -1.1
1,275,396 + IAI47_06270 0.28 -0.2
1,275,397 - IAI47_06270 0.29 -0.3
1,275,414 - IAI47_06270 0.32 -1.6
1,275,414 - IAI47_06270 0.32 -3.8
1,275,484 + IAI47_06270 0.47 -0.9
1,275,484 + IAI47_06270 0.47 +0.4
1,275,484 + IAI47_06270 0.47 -1.1
1,275,485 - IAI47_06270 0.47 -1.3
1,275,485 - IAI47_06270 0.47 -2.7
1,275,485 - IAI47_06270 0.47 -2.1
1,275,501 + IAI47_06270 0.50 -0.9
1,275,501 + IAI47_06270 0.50 +1.7
1,275,501 + IAI47_06270 0.50 -0.7
1,275,501 + IAI47_06270 0.50 -1.4
1,275,501 + IAI47_06270 0.50 -1.5
1,275,501 + IAI47_06270 0.50 -0.1
1,275,501 + IAI47_06270 0.50 -2.4
1,275,501 + IAI47_06270 0.50 +0.7
1,275,501 + IAI47_06270 0.50 +1.7
1,275,501 + IAI47_06270 0.50 -0.4
1,275,501 + IAI47_06270 0.50 -1.9
1,275,501 + IAI47_06270 0.50 +0.1
1,275,501 + IAI47_06270 0.50 -1.4
1,275,501 + IAI47_06270 0.50 -0.4
1,275,501 + IAI47_06270 0.50 -0.6
1,275,501 + IAI47_06270 0.50 -1.8
1,275,501 + IAI47_06270 0.50 +0.7
1,275,501 + IAI47_06270 0.50 -0.5
1,275,501 + IAI47_06270 0.50 -0.7
1,275,501 + IAI47_06270 0.50 -1.1
1,275,501 + IAI47_06270 0.50 +1.1
1,275,501 + IAI47_06270 0.50 +1.7
1,275,502 - IAI47_06270 0.50 -2.4
1,275,502 - IAI47_06270 0.50 -2.4
1,275,502 - IAI47_06270 0.50 -3.4
1,275,502 - IAI47_06270 0.50 -1.7
1,275,502 - IAI47_06270 0.50 -1.3
1,275,502 - IAI47_06270 0.50 -3.3
1,275,502 - IAI47_06270 0.50 -2.1
1,275,502 - IAI47_06270 0.50 -3.1
1,275,502 - IAI47_06270 0.50 -0.9
1,275,502 - IAI47_06270 0.50 -1.9
1,275,502 - IAI47_06270 0.50 -3.3
1,275,502 - IAI47_06270 0.50 -4.4
1,275,502 - IAI47_06270 0.50 -2.7
1,275,502 - IAI47_06270 0.50 -3.4
1,275,506 + IAI47_06270 0.51 -1.1
1,275,620 + IAI47_06270 0.74 -1.6
1,275,620 + IAI47_06270 0.74 -0.3
1,275,620 + IAI47_06270 0.74 -1.9
1,275,620 + IAI47_06270 0.74 -0.3
1,275,620 + IAI47_06270 0.74 -0.7
1,275,620 + IAI47_06270 0.74 -0.5
1,275,621 - IAI47_06270 0.75 -3.2
1,275,621 - IAI47_06270 0.75 -3.1
1,275,621 - IAI47_06270 0.75 -2.2
1,275,621 - IAI47_06270 0.75 -3.4
1,275,639 - IAI47_06270 0.78 -2.6
1,275,684 + IAI47_06270 0.88 +0.2
1,275,684 + IAI47_06270 0.88 +0.2
1,275,684 + IAI47_06270 0.88 -0.3
1,275,684 + IAI47_06270 0.88 -2.9
1,275,684 + IAI47_06270 0.88 +1.5
1,275,684 + IAI47_06270 0.88 -0.7
1,275,685 - IAI47_06270 0.88 +0.7
1,275,685 - IAI47_06270 0.88 -0.6
1,275,685 - IAI47_06270 0.88 -1.0
1,275,686 + IAI47_06270 0.88 -1.3
1,275,686 + IAI47_06270 0.88 +1.0
1,275,686 + IAI47_06270 0.88 +0.1
1,275,686 + IAI47_06270 0.88 +1.3
1,275,686 + IAI47_06270 0.88 +1.7
1,275,686 + IAI47_06270 0.88 +0.1
1,275,686 + IAI47_06270 0.88 -1.0
1,275,686 + IAI47_06270 0.88 +0.7
1,275,687 - IAI47_06270 0.88 -3.0
1,275,687 - IAI47_06270 0.88 -2.1
1,275,687 - IAI47_06270 0.88 -1.9
1,275,687 - IAI47_06270 0.88 -2.3
1,275,687 - IAI47_06270 0.88 -1.6
1,275,687 - IAI47_06270 0.88 -3.4
1,275,687 - IAI47_06270 0.88 -2.6
1,275,687 - IAI47_06270 0.88 -2.9
1,275,687 - IAI47_06270 0.88 -4.0
1,275,687 - IAI47_06270 0.88 -2.2
1,275,832 + -3.9
1,275,832 + -2.6
1,275,832 + -3.3
1,275,832 + -2.4
1,275,832 + -2.1
1,275,833 - -3.6
1,275,833 - -2.1
1,275,885 + -3.3
1,275,885 + -3.9
1,275,886 - -3.2
1,275,981 + IAI47_06275 0.13 -1.6
1,275,982 - IAI47_06275 0.13 -2.4
1,275,982 - IAI47_06275 0.13 -3.2

Or see this region's nucleotide sequence