Strain Fitness in Pantoea sp. MT58 around IAI47_04810

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
1,008,128	+				+0.6
1,008,371	-		IAI47_04800	0.85	+0.9
1,008,420	-				+2.5
1,008,420	-				+1.6
1,008,431	+				-0.2
1,008,431	+				+0.8
1,008,431	+				-0.0
1,008,431	+				+1.3
1,008,431	+				-0.6
1,008,432	-				+0.0
1,008,432	-				+1.2
1,008,432	-				+2.0
1,008,501	+				-0.0
1,008,502	-				-1.6
1,008,550	+		IAI47_04805	0.12	-0.2
1,008,550	+		IAI47_04805	0.12	+0.4
1,008,551	-		IAI47_04805	0.12	-0.2
1,008,551	-		IAI47_04805	0.12	-0.8
1,008,551	-		IAI47_04805	0.12	+0.1
1,008,565	+		IAI47_04805	0.16	-1.2
1,008,565	+		IAI47_04805	0.16	-1.4
1,008,566	-		IAI47_04805	0.16	-0.4
1,008,636	+		IAI47_04805	0.36	+1.8
1,008,637	-		IAI47_04805	0.37	-1.4
1,008,687	+		IAI47_04805	0.51	-0.2
1,008,687	+		IAI47_04805	0.51	-1.2
1,008,687	+		IAI47_04805	0.51	-1.1
1,008,687	+		IAI47_04805	0.51	-1.6
1,008,688	-		IAI47_04805	0.51	-0.8
1,008,688	-		IAI47_04805	0.51	-0.2
1,008,709	+		IAI47_04805	0.57	-2.1
1,008,709	+		IAI47_04805	0.57	-1.1
1,008,709	+		IAI47_04805	0.57	-2.4
1,008,748	-		IAI47_04805	0.69	-1.4
1,008,748	-		IAI47_04805	0.69	-1.2
1,008,748	-		IAI47_04805	0.69	-2.4
1,008,774	+		IAI47_04805	0.76	-0.6
1,008,775	-		IAI47_04805	0.76	-1.2
1,008,789	-		IAI47_04805	0.80	-1.8
1,008,789	-		IAI47_04805	0.80	-1.5
1,008,821	+		IAI47_04805	0.90	-2.2
1,008,822	-				+1.3
1,008,822	-				-1.8
1,008,822	-				+0.8
1,008,822	-				-2.6
1,008,822	-				-2.1
1,008,824	+				+0.4
1,008,825	-				+0.8
1,008,825	-				-2.8
1,008,858	+				-0.2
1,008,858	+				-0.8
1,008,858	+				-2.6
1,008,858	+				-2.1
1,008,858	+				-1.8
1,008,858	+				-0.2
1,008,858	+				-2.2
1,008,859	-				-1.2
1,008,859	-				-1.4
1,008,860	+				-1.1
1,008,860	+				-1.2
1,008,860	+				-1.6
1,008,861	-				-0.8
1,008,861	-				-1.6
1,008,861	-				-3.2
1,008,941	+				-2.4
1,008,942	-				-0.7
1,008,944	+				-0.4
1,008,944	+				-1.7
1,008,945	-				-0.7
1,008,957	+				+1.8
1,008,958	-				+0.2
1,008,958	-				-0.8
1,008,958	-				+0.8
1,008,958	-				+0.5
1,008,958	-				-1.5
1,008,958	-				-0.5
1,008,958	-				-0.1
1,008,958	-				-0.5
1,008,958	-				+0.2
1,008,958	-				+0.1
1,008,970	+				-1.6
1,008,970	+				-0.8
1,008,971	-				-0.2
1,008,971	-				-0.7
1,008,971	-				+0.8
1,008,999	+				+3.2
1,008,999	+				+0.3
1,009,000	-				-0.3
1,009,012	+				+0.5
1,009,012	+				-0.3
1,009,012	+				-0.2
1,009,012	+				+0.8
1,009,012	+				-0.8
1,009,012	+				-0.1
1,009,012	+				-0.6
1,009,012	+				-1.2
1,009,012	+				+0.5
1,009,012	+				-0.8
1,009,012	+				-0.5
1,009,012	+				+0.0
1,009,012	+				-1.2
1,009,012	+				+1.0
1,009,012	+				+0.0
1,009,012	+				+0.4
1,009,013	-				+0.5
1,009,013	-				-0.4
1,009,013	-				+0.2
1,009,013	-				-0.8
1,009,013	-				+0.6
1,009,013	-				+0.4
1,009,013	-				+0.4
1,009,013	-				+0.0
1,009,013	-				+0.9
1,009,013	-				+0.1
1,009,013	-				-0.3
1,009,013	-				-0.6
1,009,013	-				-0.1
1,009,013	-				+0.8
1,009,028	+				-0.1
1,009,029	-				-0.6
1,009,044	+				+0.8
1,009,045	-				+0.9
1,009,045	-				+0.0
1,009,045	-				-0.5
1,009,045	-				-0.8
1,009,045	-				+0.2
1,009,079	-				+0.1
1,009,079	-				-1.6
1,009,079	-				-0.1
1,009,104	-				+0.2
1,009,104	-				+0.5
1,009,153	+				-2.0
1,009,153	+				-0.8
1,009,153	+				-0.1
1,009,153	+				-1.0
1,009,153	+				-0.2
1,009,154	-				+0.1
1,009,154	-				+1.3
1,009,194	+				+0.4
1,009,194	+				-0.2
1,009,194	+				+0.4
1,009,194	+				-0.1
1,009,194	+				+0.5
1,009,195	-				+0.1
1,009,195	-				-0.1
1,009,195	-				+2.8
1,009,366	+		IAI47_04810	0.19	+0.2
1,009,367	-		IAI47_04810	0.19	+0.8
1,009,367	-		IAI47_04810	0.19	+0.0
1,009,451	-		IAI47_04810	0.25	-0.7
1,009,507	+		IAI47_04810	0.28	-0.1
1,009,507	+		IAI47_04810	0.28	-0.6
1,009,508	-		IAI47_04810	0.28	-0.2
1,009,508	-		IAI47_04810	0.28	-0.4
1,009,543	+		IAI47_04810	0.30	-0.4
1,009,544	-		IAI47_04810	0.30	+0.1
1,009,544	-		IAI47_04810	0.30	-0.7
1,009,558	+		IAI47_04810	0.31	-2.1
1,009,558	+		IAI47_04810	0.31	-0.4
1,009,558	+		IAI47_04810	0.31	+0.8
1,009,558	+		IAI47_04810	0.31	-2.1
1,009,558	+		IAI47_04810	0.31	+0.6
1,009,558	+		IAI47_04810	0.31	-0.6
1,009,558	+		IAI47_04810	0.31	-0.6
1,009,558	+		IAI47_04810	0.31	-1.4
1,009,558	+		IAI47_04810	0.31	-1.0
1,009,558	+		IAI47_04810	0.31	+0.2
1,009,559	-		IAI47_04810	0.31	-0.3
1,009,559	-		IAI47_04810	0.31	+0.3
1,009,559	-		IAI47_04810	0.31	-1.2
1,009,644	+		IAI47_04810	0.36	-0.2
1,009,753	+		IAI47_04810	0.43	-0.2
1,009,754	-		IAI47_04810	0.43	-1.6
1,009,792	+		IAI47_04810	0.45	-0.4
1,009,792	+		IAI47_04810	0.45	-0.2
1,009,793	-		IAI47_04810	0.45	-0.6
1,009,809	+		IAI47_04810	0.46	-0.1
1,009,809	+		IAI47_04810	0.46	+0.5
1,009,809	+		IAI47_04810	0.46	-0.7
1,009,809	+		IAI47_04810	0.46	+0.5
1,009,809	+		IAI47_04810	0.46	-2.4
1,009,809	+		IAI47_04810	0.46	+0.4
1,009,828	+		IAI47_04810	0.47	+0.2
1,009,845	+		IAI47_04810	0.48	-1.2
1,009,845	+		IAI47_04810	0.48	+0.9
1,009,845	+		IAI47_04810	0.48	-0.2
1,009,966	-		IAI47_04810	0.56	-0.2
1,009,966	-		IAI47_04810	0.56	+0.2
1,010,003	+		IAI47_04810	0.58	+0.2
1,010,004	-		IAI47_04810	0.58	-0.2
1,010,051	-		IAI47_04810	0.61	-0.2
1,010,064	+		IAI47_04810	0.61	-0.5
1,010,064	+		IAI47_04810	0.61	+0.2
1,010,064	+		IAI47_04810	0.61	+0.5
1,010,064	+		IAI47_04810	0.61	+0.1
1,010,064	+		IAI47_04810	0.61	+0.8
1,010,065	-		IAI47_04810	0.61	+0.0
1,010,065	-		IAI47_04810	0.61	+0.8
1,010,065	-		IAI47_04810	0.61	-1.4
1,010,085	+		IAI47_04810	0.63	+1.6
1,010,085	+		IAI47_04810	0.63	+0.2
1,010,086	-		IAI47_04810	0.63	+0.0
1,010,130	+		IAI47_04810	0.65	-0.5
1,010,217	+		IAI47_04810	0.71	+0.5
1,010,217	+		IAI47_04810	0.71	-0.4
1,010,218	-		IAI47_04810	0.71	+2.8
1,010,218	-		IAI47_04810	0.71	+0.3
1,010,259	+		IAI47_04810	0.73	-0.7
1,010,259	+		IAI47_04810	0.73	-0.4
1,010,259	+		IAI47_04810	0.73	+0.6
1,010,260	-		IAI47_04810	0.73	-0.5
1,010,260	-		IAI47_04810	0.73	+0.1
1,010,293	+		IAI47_04810	0.75	-0.5
1,010,293	+		IAI47_04810	0.75	+0.7
1,010,337	-		IAI47_04810	0.78	-0.8
1,010,386	+		IAI47_04810	0.81	+1.2
1,010,386	+		IAI47_04810	0.81	+0.0
1,010,459	-		IAI47_04810	0.85	+3.1
1,010,459	-		IAI47_04810	0.85	+1.1
1,010,494	+		IAI47_04810	0.87	+0.4
1,010,494	+		IAI47_04810	0.87	+0.9
1,010,494	+		IAI47_04810	0.87	-0.4
1,010,495	-		IAI47_04810	0.87	-1.2
1,010,495	-		IAI47_04810	0.87	-0.8
1,010,495	-		IAI47_04810	0.87	+2.0
1,010,495	-		IAI47_04810	0.87	+0.8
1,010,495	-		IAI47_04810	0.87	-1.0
1,010,495	-		IAI47_04810	0.87	-0.0
1,010,495	-		IAI47_04810	0.87	+0.8
1,010,596	+				-0.6
1,010,597	-				-2.8
1,010,626	+				-2.2
1,010,626	+				-1.4
1,010,626	+				+0.1
1,010,626	+				+1.3
1,010,627	-				-1.2
1,010,627	-				-0.2
1,010,627	-				+0.0
1,010,704	+				-0.5
1,010,704	+				+0.0
1,010,704	+				-0.7
1,010,704	+				-0.1
1,010,704	+				+1.3
1,010,704	+				-0.1
1,010,705	-				-1.1
1,010,705	-				+0.1
1,010,723	-				-0.1
1,010,748	-				-1.6
1,011,684	-				-0.5
1,011,684	-				+0.3
1,011,684	-				+0.8
1,011,684	-				-0.6
1,011,684	-				-0.5
1,011,684	-				-0.5
1,011,684	-				+1.2
1,011,684	-				+0.5
1,011,685	+				+0.8
1,011,685	+				-2.2
1,011,685	+				-0.6
1,011,685	+				-1.1
1,011,685	+				-1.2
1,011,686	-				-0.2
1,011,686	-				-0.4
1,011,686	-				+0.5
1,011,686	-				-0.7