Strain Fitness in Pantoea sp. MT58 around IAI47_20520

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20515 and IAI47_20520 are separated by 43 nucleotidesIAI47_20520 and IAI47_20525 are separated by 362 nucleotides IAI47_20515: IAI47_20515 - maltoporin, at 351,904 to 353,205 _20515 IAI47_20520: IAI47_20520 - maltose/maltodextrin ABC transporter ATP-binding protein MalK, at 353,249 to 354,358 _20520 IAI47_20525: IAI47_20525 - maltose/maltodextrin ABC transporter substrate-binding protein MalE, at 354,721 to 355,911 _20525 Position (kb) 353 354 355Strain fitness (log2 ratio) -2 -1 0 1 2 3at 352.293 kb on - strand, within IAI47_20515at 352.293 kb on - strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.358 kb on + strand, within IAI47_20515at 352.374 kb on + strand, within IAI47_20515at 352.375 kb on - strand, within IAI47_20515at 352.375 kb on - strand, within IAI47_20515at 352.434 kb on - strand, within IAI47_20515at 352.434 kb on - strand, within IAI47_20515at 352.434 kb on - strand, within IAI47_20515at 352.454 kb on + strand, within IAI47_20515at 352.454 kb on + strand, within IAI47_20515at 352.455 kb on - strand, within IAI47_20515at 352.455 kb on - strand, within IAI47_20515at 352.476 kb on + strand, within IAI47_20515at 352.477 kb on - strand, within IAI47_20515at 352.477 kb on - strand, within IAI47_20515at 352.477 kb on - strand, within IAI47_20515at 352.529 kb on + strand, within IAI47_20515at 352.556 kb on + strand, within IAI47_20515at 352.556 kb on + strand, within IAI47_20515at 352.557 kb on - strand, within IAI47_20515at 352.557 kb on - strand, within IAI47_20515at 352.657 kb on - strand, within IAI47_20515at 352.722 kb on + strand, within IAI47_20515at 352.770 kb on + strand, within IAI47_20515at 352.771 kb on - strand, within IAI47_20515at 352.778 kb on + strand, within IAI47_20515at 352.779 kb on - strand, within IAI47_20515at 352.781 kb on + strand, within IAI47_20515at 352.781 kb on + strand, within IAI47_20515at 352.781 kb on + strand, within IAI47_20515at 352.782 kb on - strand, within IAI47_20515at 352.782 kb on - strand, within IAI47_20515at 352.782 kb on - strand, within IAI47_20515at 352.814 kb on + strand, within IAI47_20515at 352.814 kb on + strand, within IAI47_20515at 352.881 kb on + strand, within IAI47_20515at 352.938 kb on - strand, within IAI47_20515at 352.958 kb on + strand, within IAI47_20515at 352.958 kb on + strand, within IAI47_20515at 352.959 kb on - strand, within IAI47_20515at 352.959 kb on - strand, within IAI47_20515at 352.959 kb on - strand, within IAI47_20515at 352.959 kb on - strand, within IAI47_20515at 352.997 kb on - strand, within IAI47_20515at 353.012 kb on + strand, within IAI47_20515at 353.013 kb on - strand, within IAI47_20515at 353.039 kb on + strand, within IAI47_20515at 353.040 kb on - strand, within IAI47_20515at 353.040 kb on - strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.044 kb on - strand, within IAI47_20515at 353.044 kb on - strand, within IAI47_20515at 353.044 kb on - strand, within IAI47_20515at 353.125 kb on - strandat 353.200 kb on + strandat 353.201 kb on - strandat 353.232 kb on + strandat 353.251 kb on - strandat 353.269 kb on - strandat 353.380 kb on - strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.592 kb on - strand, within IAI47_20520at 353.660 kb on - strand, within IAI47_20520at 353.688 kb on + strand, within IAI47_20520at 353.694 kb on + strand, within IAI47_20520at 353.793 kb on + strand, within IAI47_20520at 353.794 kb on - strand, within IAI47_20520at 353.794 kb on - strand, within IAI47_20520at 353.819 kb on - strand, within IAI47_20520at 354.074 kb on - strand, within IAI47_20520at 354.074 kb on - strand, within IAI47_20520at 354.074 kb on - strand, within IAI47_20520at 354.100 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.260 kb on + strandat 354.260 kb on + strandat 354.260 kb on + strandat 354.261 kb on - strandat 354.283 kb on + strandat 354.295 kb on + strandat 354.295 kb on + strandat 354.296 kb on - strandat 354.341 kb on + strandat 354.341 kb on + strandat 354.342 kb on - strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.374 kb on - strandat 354.381 kb on + strandat 354.381 kb on + strandat 354.381 kb on + strandat 354.381 kb on + strandat 354.382 kb on - strandat 354.422 kb on + strandat 354.422 kb on + strandat 354.422 kb on + strandat 354.422 kb on + strandat 354.422 kb on + strandat 354.423 kb on - strandat 354.577 kb on + strandat 354.578 kb on - strandat 354.578 kb on - strandat 354.589 kb on + strandat 354.635 kb on + strandat 354.636 kb on - strandat 354.636 kb on - strandat 354.667 kb on + strandat 354.668 kb on - strandat 354.721 kb on - strandat 354.721 kb on - strandat 354.847 kb on + strand, within IAI47_20525at 354.848 kb on - strand, within IAI47_20525at 354.897 kb on + strand, within IAI47_20525at 354.898 kb on - strand, within IAI47_20525at 354.898 kb on - strand, within IAI47_20525at 354.937 kb on + strand, within IAI47_20525at 354.937 kb on + strand, within IAI47_20525at 354.975 kb on + strand, within IAI47_20525at 354.975 kb on + strand, within IAI47_20525at 354.975 kb on + strand, within IAI47_20525at 354.976 kb on - strand, within IAI47_20525at 354.976 kb on - strand, within IAI47_20525at 355.102 kb on - strand, within IAI47_20525at 355.148 kb on - strand, within IAI47_20525at 355.148 kb on - strand, within IAI47_20525at 355.206 kb on + strand, within IAI47_20525at 355.207 kb on - strand, within IAI47_20525at 355.240 kb on - strand, within IAI47_20525at 355.240 kb on - strand, within IAI47_20525at 355.240 kb on - strand, within IAI47_20525at 355.261 kb on + strand, within IAI47_20525at 355.261 kb on + strand, within IAI47_20525at 355.261 kb on + strand, within IAI47_20525at 355.262 kb on - strand, within IAI47_20525at 355.262 kb on - strand, within IAI47_20525at 355.262 kb on - strand, within IAI47_20525at 355.262 kb on - strand, within IAI47_20525at 355.297 kb on + strand, within IAI47_20525at 355.297 kb on + strand, within IAI47_20525at 355.298 kb on - strand, within IAI47_20525at 355.324 kb on + strand, within IAI47_20525

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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352,293 - IAI47_20515 0.30 -0.3
352,293 - IAI47_20515 0.30 +2.1
352,304 + IAI47_20515 0.31 +1.2
352,304 + IAI47_20515 0.31 -0.1
352,304 + IAI47_20515 0.31 -1.4
352,304 + IAI47_20515 0.31 +0.5
352,304 + IAI47_20515 0.31 +0.3
352,304 + IAI47_20515 0.31 +0.5
352,304 + IAI47_20515 0.31 -0.1
352,304 + IAI47_20515 0.31 -0.6
352,304 + IAI47_20515 0.31 +1.8
352,305 - IAI47_20515 0.31 +0.8
352,305 - IAI47_20515 0.31 -0.5
352,305 - IAI47_20515 0.31 -0.7
352,305 - IAI47_20515 0.31 +0.4
352,305 - IAI47_20515 0.31 +0.5
352,305 - IAI47_20515 0.31 +0.4
352,358 + IAI47_20515 0.35 +0.1
352,374 + IAI47_20515 0.36 -0.9
352,375 - IAI47_20515 0.36 +0.4
352,375 - IAI47_20515 0.36 +1.1
352,434 - IAI47_20515 0.41 +0.8
352,434 - IAI47_20515 0.41 -0.5
352,434 - IAI47_20515 0.41 +0.8
352,454 + IAI47_20515 0.42 -1.1
352,454 + IAI47_20515 0.42 +0.5
352,455 - IAI47_20515 0.42 -0.4
352,455 - IAI47_20515 0.42 -0.3
352,476 + IAI47_20515 0.44 +1.8
352,477 - IAI47_20515 0.44 +1.8
352,477 - IAI47_20515 0.44 +1.1
352,477 - IAI47_20515 0.44 -0.1
352,529 + IAI47_20515 0.48 -0.2
352,556 + IAI47_20515 0.50 -0.9
352,556 + IAI47_20515 0.50 -2.5
352,557 - IAI47_20515 0.50 -0.3
352,557 - IAI47_20515 0.50 +1.1
352,657 - IAI47_20515 0.58 +1.2
352,722 + IAI47_20515 0.63 +1.4
352,770 + IAI47_20515 0.67 +1.1
352,771 - IAI47_20515 0.67 +1.3
352,778 + IAI47_20515 0.67 +0.2
352,779 - IAI47_20515 0.67 +0.0
352,781 + IAI47_20515 0.67 -0.5
352,781 + IAI47_20515 0.67 +1.8
352,781 + IAI47_20515 0.67 +1.2
352,782 - IAI47_20515 0.67 -0.4
352,782 - IAI47_20515 0.67 +0.2
352,782 - IAI47_20515 0.67 +0.2
352,814 + IAI47_20515 0.70 -0.2
352,814 + IAI47_20515 0.70 -0.4
352,881 + IAI47_20515 0.75 -0.8
352,938 - IAI47_20515 0.79 +0.0
352,958 + IAI47_20515 0.81 -0.6
352,958 + IAI47_20515 0.81 -0.2
352,959 - IAI47_20515 0.81 -0.2
352,959 - IAI47_20515 0.81 +1.1
352,959 - IAI47_20515 0.81 +0.3
352,959 - IAI47_20515 0.81 +0.8
352,997 - IAI47_20515 0.84 +0.3
353,012 + IAI47_20515 0.85 -0.2
353,013 - IAI47_20515 0.85 -0.4
353,039 + IAI47_20515 0.87 -1.2
353,040 - IAI47_20515 0.87 +1.8
353,040 - IAI47_20515 0.87 -1.8
353,043 + IAI47_20515 0.87 -0.1
353,043 + IAI47_20515 0.87 -0.8
353,043 + IAI47_20515 0.87 +0.5
353,043 + IAI47_20515 0.87 +0.5
353,043 + IAI47_20515 0.87 -1.2
353,043 + IAI47_20515 0.87 -0.6
353,043 + IAI47_20515 0.87 +0.8
353,043 + IAI47_20515 0.87 -0.2
353,044 - IAI47_20515 0.88 -1.4
353,044 - IAI47_20515 0.88 +0.4
353,044 - IAI47_20515 0.88 -1.4
353,125 - -0.8
353,200 + -0.5
353,201 - -0.1
353,232 + +0.2
353,251 - -1.2
353,269 - +1.1
353,380 - IAI47_20520 0.12 +0.1
353,524 + IAI47_20520 0.25 -1.5
353,524 + IAI47_20520 0.25 -0.4
353,524 + IAI47_20520 0.25 -0.2
353,524 + IAI47_20520 0.25 +0.2
353,524 + IAI47_20520 0.25 -0.6
353,524 + IAI47_20520 0.25 +0.6
353,525 - IAI47_20520 0.25 -0.6
353,525 - IAI47_20520 0.25 -0.2
353,525 - IAI47_20520 0.25 +1.0
353,525 - IAI47_20520 0.25 +0.8
353,525 - IAI47_20520 0.25 +0.3
353,525 - IAI47_20520 0.25 +0.6
353,525 - IAI47_20520 0.25 -1.7
353,525 - IAI47_20520 0.25 +1.1
353,525 - IAI47_20520 0.25 -1.4
353,525 - IAI47_20520 0.25 +0.4
353,525 - IAI47_20520 0.25 +0.8
353,592 - IAI47_20520 0.31 +0.6
353,660 - IAI47_20520 0.37 +1.5
353,688 + IAI47_20520 0.40 -0.2
353,694 + IAI47_20520 0.40 -0.7
353,793 + IAI47_20520 0.49 -1.2
353,794 - IAI47_20520 0.49 +0.8
353,794 - IAI47_20520 0.49 +1.2
353,819 - IAI47_20520 0.51 +0.4
354,074 - IAI47_20520 0.74 +0.4
354,074 - IAI47_20520 0.74 +0.5
354,074 - IAI47_20520 0.74 +3.1
354,100 - IAI47_20520 0.77 +1.4
354,109 - IAI47_20520 0.77 -0.0
354,109 - IAI47_20520 0.77 +2.0
354,109 - IAI47_20520 0.77 +0.5
354,109 - IAI47_20520 0.77 -0.1
354,260 + +0.1
354,260 + -0.6
354,260 + +1.8
354,261 - -0.0
354,283 + +0.8
354,295 + +0.8
354,295 + -0.8
354,296 - -0.4
354,341 + -0.1
354,341 + +0.2
354,342 - -0.6
354,373 + +0.5
354,373 + +0.3
354,373 + +0.6
354,373 + +0.6
354,373 + -0.3
354,373 + -0.2
354,374 - -0.3
354,381 + +0.2
354,381 + -0.7
354,381 + -0.2
354,381 + +0.8
354,382 - +0.8
354,422 + +1.1
354,422 + -0.2
354,422 + -0.3
354,422 + -0.9
354,422 + +0.1
354,423 - -0.1
354,577 + -0.6
354,578 - -0.4
354,578 - +1.5
354,589 + +0.5
354,635 + +1.0
354,636 - +0.2
354,636 - +0.5
354,667 + +0.8
354,668 - +0.2
354,721 - +0.4
354,721 - -0.1
354,847 + IAI47_20525 0.11 -0.2
354,848 - IAI47_20525 0.11 -0.8
354,897 + IAI47_20525 0.15 -0.5
354,898 - IAI47_20525 0.15 -0.7
354,898 - IAI47_20525 0.15 -1.3
354,937 + IAI47_20525 0.18 +1.4
354,937 + IAI47_20525 0.18 +2.1
354,975 + IAI47_20525 0.21 +1.8
354,975 + IAI47_20525 0.21 -0.9
354,975 + IAI47_20525 0.21 -1.0
354,976 - IAI47_20525 0.21 -0.5
354,976 - IAI47_20525 0.21 -0.4
355,102 - IAI47_20525 0.32 +0.8
355,148 - IAI47_20525 0.36 +0.2
355,148 - IAI47_20525 0.36 -1.3
355,206 + IAI47_20525 0.41 -0.4
355,207 - IAI47_20525 0.41 +0.4
355,240 - IAI47_20525 0.44 -0.5
355,240 - IAI47_20525 0.44 -1.2
355,240 - IAI47_20525 0.44 -0.2
355,261 + IAI47_20525 0.45 -0.4
355,261 + IAI47_20525 0.45 -1.5
355,261 + IAI47_20525 0.45 -0.8
355,262 - IAI47_20525 0.45 +0.2
355,262 - IAI47_20525 0.45 -0.3
355,262 - IAI47_20525 0.45 -0.5
355,262 - IAI47_20525 0.45 +0.8
355,297 + IAI47_20525 0.48 -0.5
355,297 + IAI47_20525 0.48 +0.1
355,298 - IAI47_20525 0.48 +0.4
355,324 + IAI47_20525 0.51 -0.5

Or see this region's nucleotide sequence