Strain Fitness in Pantoea sp. MT58 around IAI47_20310

Experiment: Ying_AminoAcid20 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_20305 and IAI47_20310 are separated by 2 nucleotidesIAI47_20310 and IAI47_20315 overlap by 14 nucleotides IAI47_20305: IAI47_20305 - amidohydrolase, at 298,675 to 300,552 _20305 IAI47_20310: IAI47_20310 - DoxX family protein, at 300,555 to 300,977 _20310 IAI47_20315: IAI47_20315 - MFS transporter, at 300,964 to 302,592 _20315 Position (kb) 300 301Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 299.634 kb on - strand, within IAI47_20305at 299.634 kb on - strand, within IAI47_20305at 299.716 kb on + strand, within IAI47_20305at 299.716 kb on + strand, within IAI47_20305at 299.717 kb on - strand, within IAI47_20305at 299.717 kb on - strand, within IAI47_20305at 299.717 kb on - strand, within IAI47_20305at 299.770 kb on - strand, within IAI47_20305at 299.826 kb on + strand, within IAI47_20305at 299.826 kb on + strand, within IAI47_20305at 299.826 kb on + strand, within IAI47_20305at 299.827 kb on - strand, within IAI47_20305at 299.830 kb on - strand, within IAI47_20305at 299.830 kb on - strand, within IAI47_20305at 299.841 kb on + strand, within IAI47_20305at 299.896 kb on + strand, within IAI47_20305at 299.896 kb on + strand, within IAI47_20305at 299.896 kb on + strand, within IAI47_20305at 299.896 kb on + strand, within IAI47_20305at 299.897 kb on - strand, within IAI47_20305at 299.918 kb on + strand, within IAI47_20305at 299.918 kb on + strand, within IAI47_20305at 299.918 kb on + strand, within IAI47_20305at 299.918 kb on + strand, within IAI47_20305at 299.919 kb on - strand, within IAI47_20305at 300.010 kb on + strand, within IAI47_20305at 300.010 kb on + strand, within IAI47_20305at 300.010 kb on + strand, within IAI47_20305at 300.010 kb on + strand, within IAI47_20305at 300.011 kb on - strand, within IAI47_20305at 300.011 kb on - strand, within IAI47_20305at 300.011 kb on - strand, within IAI47_20305at 300.011 kb on - strand, within IAI47_20305at 300.032 kb on - strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.073 kb on + strand, within IAI47_20305at 300.074 kb on - strand, within IAI47_20305at 300.074 kb on - strand, within IAI47_20305at 300.074 kb on - strand, within IAI47_20305at 300.074 kb on - strand, within IAI47_20305at 300.074 kb on - strand, within IAI47_20305at 300.074 kb on - strandat 300.074 kb on - strand, within IAI47_20305at 300.074 kb on - strand, within IAI47_20305at 300.074 kb on - strand, within IAI47_20305at 300.074 kb on - strand, within IAI47_20305at 300.074 kb on - strand, within IAI47_20305at 300.074 kb on - strand, within IAI47_20305at 300.074 kb on - strand, within IAI47_20305at 300.074 kb on - strand, within IAI47_20305at 300.171 kb on + strand, within IAI47_20305at 300.171 kb on + strand, within IAI47_20305at 300.171 kb on + strand, within IAI47_20305at 300.171 kb on + strand, within IAI47_20305at 300.172 kb on - strand, within IAI47_20305at 300.172 kb on - strand, within IAI47_20305at 300.207 kb on + strand, within IAI47_20305at 300.279 kb on + strand, within IAI47_20305at 300.279 kb on + strand, within IAI47_20305at 300.280 kb on - strand, within IAI47_20305at 300.286 kb on + strand, within IAI47_20305at 300.286 kb on + strand, within IAI47_20305at 300.287 kb on - strand, within IAI47_20305at 300.356 kb on + strand, within IAI47_20305at 300.356 kb on + strand, within IAI47_20305at 300.357 kb on - strand, within IAI47_20305at 300.357 kb on - strand, within IAI47_20305at 300.492 kb on - strandat 300.507 kb on + strandat 300.550 kb on + strandat 300.551 kb on - strandat 300.551 kb on - strandat 300.551 kb on - strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.561 kb on + strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.562 kb on - strandat 300.634 kb on + strand, within IAI47_20310at 300.635 kb on - strand, within IAI47_20310at 300.635 kb on - strand, within IAI47_20310at 300.635 kb on - strand, within IAI47_20310at 300.640 kb on + strand, within IAI47_20310at 300.640 kb on + strand, within IAI47_20310at 300.640 kb on + strand, within IAI47_20310at 300.640 kb on + strand, within IAI47_20310at 300.640 kb on + strand, within IAI47_20310at 300.640 kb on + strand, within IAI47_20310at 300.765 kb on - strand, within IAI47_20310at 300.789 kb on - strand, within IAI47_20310at 300.836 kb on - strand, within IAI47_20310at 300.890 kb on + strand, within IAI47_20310at 300.890 kb on + strand, within IAI47_20310at 300.890 kb on + strand, within IAI47_20310at 300.890 kb on + strand, within IAI47_20310at 300.891 kb on - strand, within IAI47_20310at 300.891 kb on - strand, within IAI47_20310at 300.896 kb on + strand, within IAI47_20310at 300.950 kb on + strandat 300.951 kb on - strandat 300.975 kb on + strandat 300.981 kb on + strandat 300.981 kb on + strandat 300.981 kb on + strandat 300.982 kb on - strandat 300.982 kb on - strandat 300.982 kb on - strandat 301.023 kb on + strandat 301.024 kb on - strandat 301.040 kb on + strandat 301.068 kb on + strandat 301.068 kb on + strandat 301.068 kb on + strandat 301.068 kb on + strandat 301.068 kb on + strandat 301.068 kb on + strandat 301.068 kb on + strandat 301.069 kb on - strandat 301.069 kb on - strandat 301.069 kb on - strandat 301.073 kb on + strandat 301.073 kb on + strandat 301.074 kb on - strandat 301.098 kb on + strandat 301.258 kb on + strand, within IAI47_20315at 301.258 kb on + strand, within IAI47_20315at 301.258 kb on + strand, within IAI47_20315at 301.259 kb on - strand, within IAI47_20315at 301.310 kb on + strand, within IAI47_20315at 301.458 kb on + strand, within IAI47_20315at 301.458 kb on + strand, within IAI47_20315at 301.458 kb on + strand, within IAI47_20315at 301.458 kb on + strand, within IAI47_20315at 301.458 kb on - strand, within IAI47_20315at 301.459 kb on - strand, within IAI47_20315at 301.459 kb on - strand, within IAI47_20315at 301.473 kb on + strand, within IAI47_20315at 301.473 kb on + strand, within IAI47_20315at 301.476 kb on + strand, within IAI47_20315at 301.477 kb on - strand, within IAI47_20315at 301.477 kb on - strand, within IAI47_20315at 301.551 kb on + strand, within IAI47_20315at 301.551 kb on + strand, within IAI47_20315at 301.551 kb on + strand, within IAI47_20315at 301.552 kb on - strand, within IAI47_20315at 301.552 kb on - strand, within IAI47_20315at 301.552 kb on - strand, within IAI47_20315at 301.559 kb on + strand, within IAI47_20315at 301.650 kb on - strand, within IAI47_20315at 301.697 kb on + strand, within IAI47_20315at 301.697 kb on + strand, within IAI47_20315at 301.698 kb on - strand, within IAI47_20315at 301.698 kb on - strand, within IAI47_20315at 301.698 kb on - strand, within IAI47_20315at 301.698 kb on - strand, within IAI47_20315at 301.698 kb on - strand, within IAI47_20315at 301.871 kb on + strand, within IAI47_20315at 301.871 kb on + strand, within IAI47_20315at 301.871 kb on + strand, within IAI47_20315at 301.872 kb on - strand, within IAI47_20315at 301.872 kb on - strand, within IAI47_20315at 301.872 kb on - strand, within IAI47_20315at 301.872 kb on - strand, within IAI47_20315at 301.956 kb on - strand, within IAI47_20315

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
remove
299,634 - IAI47_20305 0.51 -1.2
299,634 - IAI47_20305 0.51 +0.8
299,716 + IAI47_20305 0.55 -0.3
299,716 + IAI47_20305 0.55 +0.1
299,717 - IAI47_20305 0.55 -1.5
299,717 - IAI47_20305 0.55 +0.4
299,717 - IAI47_20305 0.55 +0.4
299,770 - IAI47_20305 0.58 +1.4
299,826 + IAI47_20305 0.61 -0.1
299,826 + IAI47_20305 0.61 +0.1
299,826 + IAI47_20305 0.61 +0.4
299,827 - IAI47_20305 0.61 +1.1
299,830 - IAI47_20305 0.62 +0.8
299,830 - IAI47_20305 0.62 -2.8
299,841 + IAI47_20305 0.62 +0.1
299,896 + IAI47_20305 0.65 +1.0
299,896 + IAI47_20305 0.65 -0.8
299,896 + IAI47_20305 0.65 +0.3
299,896 + IAI47_20305 0.65 +2.2
299,897 - IAI47_20305 0.65 +0.5
299,918 + IAI47_20305 0.66 -1.2
299,918 + IAI47_20305 0.66 +1.6
299,918 + IAI47_20305 0.66 +0.4
299,918 + IAI47_20305 0.66 +0.5
299,919 - IAI47_20305 0.66 +0.1
300,010 + IAI47_20305 0.71 +0.0
300,010 + IAI47_20305 0.71 -0.8
300,010 + IAI47_20305 0.71 +0.6
300,010 + IAI47_20305 0.71 +1.2
300,011 - IAI47_20305 0.71 +0.1
300,011 - IAI47_20305 0.71 -0.4
300,011 - IAI47_20305 0.71 +0.2
300,011 - IAI47_20305 0.71 -0.4
300,032 - IAI47_20305 0.72 -0.8
300,073 + IAI47_20305 0.74 +0.2
300,073 + IAI47_20305 0.74 -0.3
300,073 + IAI47_20305 0.74 -0.0
300,073 + IAI47_20305 0.74 +0.8
300,073 + IAI47_20305 0.74 +2.8
300,073 + IAI47_20305 0.74 +0.8
300,073 + IAI47_20305 0.74 -0.5
300,073 + IAI47_20305 0.74 +0.4
300,073 + IAI47_20305 0.74 -0.8
300,073 + IAI47_20305 0.74 -1.8
300,073 + IAI47_20305 0.74 -0.9
300,073 + IAI47_20305 0.74 -1.1
300,073 + IAI47_20305 0.74 +0.3
300,073 + IAI47_20305 0.74 +0.1
300,074 - IAI47_20305 0.74 -0.8
300,074 - IAI47_20305 0.74 +1.6
300,074 - IAI47_20305 0.74 -0.3
300,074 - IAI47_20305 0.74 -0.5
300,074 - IAI47_20305 0.74 +0.8
300,074 - +2.4
300,074 - IAI47_20305 0.74 +1.1
300,074 - IAI47_20305 0.74 -0.3
300,074 - IAI47_20305 0.74 +0.1
300,074 - IAI47_20305 0.74 +1.0
300,074 - IAI47_20305 0.74 +0.6
300,074 - IAI47_20305 0.74 +0.5
300,074 - IAI47_20305 0.74 +0.4
300,074 - IAI47_20305 0.74 +1.8
300,171 + IAI47_20305 0.80 -2.5
300,171 + IAI47_20305 0.80 +2.1
300,171 + IAI47_20305 0.80 -0.8
300,171 + IAI47_20305 0.80 -0.2
300,172 - IAI47_20305 0.80 -1.8
300,172 - IAI47_20305 0.80 +0.4
300,207 + IAI47_20305 0.82 -1.2
300,279 + IAI47_20305 0.85 -0.2
300,279 + IAI47_20305 0.85 -0.0
300,280 - IAI47_20305 0.85 -0.8
300,286 + IAI47_20305 0.86 -1.1
300,286 + IAI47_20305 0.86 +0.8
300,287 - IAI47_20305 0.86 +0.8
300,356 + IAI47_20305 0.90 +0.6
300,356 + IAI47_20305 0.90 +0.8
300,357 - IAI47_20305 0.90 -0.5
300,357 - IAI47_20305 0.90 +0.4
300,492 - +0.5
300,507 + +0.3
300,550 + +0.1
300,551 - -0.3
300,551 - +0.4
300,551 - -0.2
300,561 + -0.2
300,561 + -0.3
300,561 + +0.8
300,561 + +1.6
300,561 + +0.3
300,561 + -0.8
300,561 + -0.1
300,561 + -0.4
300,561 + +0.2
300,561 + +1.3
300,561 + +0.4
300,561 + -0.1
300,561 + +0.2
300,561 + -0.4
300,561 + -0.9
300,562 - +0.2
300,562 - -0.2
300,562 - +0.6
300,562 - +1.1
300,562 - +0.1
300,562 - +1.4
300,562 - +0.3
300,562 - +0.6
300,562 - -0.1
300,562 - +0.2
300,562 - +0.2
300,562 - -0.4
300,562 - -0.2
300,562 - +0.8
300,562 - +1.3
300,562 - -1.4
300,562 - -0.4
300,634 + IAI47_20310 0.19 -0.8
300,635 - IAI47_20310 0.19 +0.3
300,635 - IAI47_20310 0.19 +0.2
300,635 - IAI47_20310 0.19 -0.2
300,640 + IAI47_20310 0.20 -0.2
300,640 + IAI47_20310 0.20 +0.3
300,640 + IAI47_20310 0.20 +0.1
300,640 + IAI47_20310 0.20 +0.6
300,640 + IAI47_20310 0.20 -0.5
300,640 + IAI47_20310 0.20 -1.2
300,765 - IAI47_20310 0.50 -1.8
300,789 - IAI47_20310 0.55 -0.9
300,836 - IAI47_20310 0.66 -2.8
300,890 + IAI47_20310 0.79 +0.6
300,890 + IAI47_20310 0.79 +0.1
300,890 + IAI47_20310 0.79 -0.0
300,890 + IAI47_20310 0.79 -0.6
300,891 - IAI47_20310 0.79 +0.2
300,891 - IAI47_20310 0.79 +0.1
300,896 + IAI47_20310 0.81 +0.3
300,950 + -0.0
300,951 - +0.5
300,975 + -1.0
300,981 + -0.7
300,981 + +0.4
300,981 + +0.1
300,982 - -1.0
300,982 - -1.2
300,982 - +0.7
301,023 + -0.5
301,024 - -2.7
301,040 + +0.6
301,068 + +1.2
301,068 + -0.2
301,068 + +0.5
301,068 + -0.8
301,068 + -0.4
301,068 + -0.4
301,068 + +0.5
301,069 - +0.6
301,069 - +0.5
301,069 - +1.2
301,073 + +0.4
301,073 + +0.6
301,074 - +0.8
301,098 + -0.3
301,258 + IAI47_20315 0.18 +1.2
301,258 + IAI47_20315 0.18 -0.5
301,258 + IAI47_20315 0.18 -0.1
301,259 - IAI47_20315 0.18 +1.0
301,310 + IAI47_20315 0.21 -0.7
301,458 + IAI47_20315 0.30 +0.8
301,458 + IAI47_20315 0.30 +2.2
301,458 + IAI47_20315 0.30 +0.1
301,458 + IAI47_20315 0.30 -0.2
301,458 - IAI47_20315 0.30 +1.9
301,459 - IAI47_20315 0.30 +0.1
301,459 - IAI47_20315 0.30 +0.2
301,473 + IAI47_20315 0.31 +3.6
301,473 + IAI47_20315 0.31 -0.0
301,476 + IAI47_20315 0.31 -0.5
301,477 - IAI47_20315 0.31 -1.1
301,477 - IAI47_20315 0.31 -1.8
301,551 + IAI47_20315 0.36 +0.5
301,551 + IAI47_20315 0.36 -0.6
301,551 + IAI47_20315 0.36 +0.6
301,552 - IAI47_20315 0.36 +0.9
301,552 - IAI47_20315 0.36 +1.8
301,552 - IAI47_20315 0.36 +0.3
301,559 + IAI47_20315 0.37 -1.1
301,650 - IAI47_20315 0.42 +0.8
301,697 + IAI47_20315 0.45 +0.3
301,697 + IAI47_20315 0.45 +1.1
301,698 - IAI47_20315 0.45 -0.3
301,698 - IAI47_20315 0.45 -1.4
301,698 - IAI47_20315 0.45 +1.8
301,698 - IAI47_20315 0.45 +0.5
301,698 - IAI47_20315 0.45 -0.3
301,871 + IAI47_20315 0.56 -0.5
301,871 + IAI47_20315 0.56 +0.8
301,871 + IAI47_20315 0.56 +0.4
301,872 - IAI47_20315 0.56 -0.0
301,872 - IAI47_20315 0.56 +2.0
301,872 - IAI47_20315 0.56 +0.5
301,872 - IAI47_20315 0.56 -0.2
301,956 - IAI47_20315 0.61 -0.8

Or see this region's nucleotide sequence