Strain Fitness in Pantoea sp. MT58 around IAI47_19380

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
100,875	+		IAI47_19375	0.21	+0.5
100,876	-		IAI47_19375	0.21	+0.6
100,905	+		IAI47_19375	0.24	+0.2
100,905	+		IAI47_19375	0.24	-0.5
100,919	+		IAI47_19375	0.26	-0.6
100,919	+		IAI47_19375	0.26	-1.0
100,919	+		IAI47_19375	0.26	-0.5
100,919	+		IAI47_19375	0.26	-0.3
100,919	+		IAI47_19375	0.26	+0.5
100,920	-		IAI47_19375	0.26	+0.3
100,978	+		IAI47_19375	0.32	-0.2
100,978	+		IAI47_19375	0.32	-1.7
100,979	-		IAI47_19375	0.32	-1.6
100,979	-		IAI47_19375	0.32	-1.3
100,979	-		IAI47_19375	0.32	-0.2
100,988	+		IAI47_19375	0.33	-0.2
100,988	+		IAI47_19375	0.33	-0.6
100,988	+		IAI47_19375	0.33	-0.5
100,989	-		IAI47_19375	0.33	+1.1
100,989	-		IAI47_19375	0.33	+1.2
100,989	-		IAI47_19375	0.33	-0.6
100,989	-		IAI47_19375	0.33	+0.1
101,053	+		IAI47_19375	0.40	+0.3
101,053	+		IAI47_19375	0.40	-0.5
101,054	-		IAI47_19375	0.40	+1.5
101,054	-		IAI47_19375	0.40	-1.2
101,058	-		IAI47_19375	0.41	-0.8
101,069	+		IAI47_19375	0.42	-0.3
101,070	-		IAI47_19375	0.42	-1.5
101,070	-		IAI47_19375	0.42	+1.3
101,083	+		IAI47_19375	0.43	+1.3
101,084	-		IAI47_19375	0.43	-0.2
101,084	-		IAI47_19375	0.43	-1.8
101,097	+		IAI47_19375	0.45	-0.7
101,098	-		IAI47_19375	0.45	+0.7
101,098	-		IAI47_19375	0.45	+0.2
101,098	-		IAI47_19375	0.45	+0.1
101,111	+		IAI47_19375	0.46	+0.8
101,111	+		IAI47_19375	0.46	+0.2
101,111	+		IAI47_19375	0.46	-0.5
101,111	+		IAI47_19375	0.46	+3.2
101,112	-		IAI47_19375	0.46	-0.8
101,112	-		IAI47_19375	0.46	-1.0
101,112	-		IAI47_19375	0.46	+0.4
101,112	-		IAI47_19375	0.46	-0.7
101,112	-		IAI47_19375	0.46	-0.2
101,178	-		IAI47_19375	0.53	+0.8
101,178	-		IAI47_19375	0.53	+0.6
101,183	+		IAI47_19375	0.54	-1.0
101,183	+		IAI47_19375	0.54	-0.4
101,183	+		IAI47_19375	0.54	+0.0
101,184	-		IAI47_19375	0.54	+0.1
101,238	-		IAI47_19375	0.60	-0.9
101,261	+		IAI47_19375	0.62	+0.6
101,261	+		IAI47_19375	0.62	-0.3
101,261	+		IAI47_19375	0.62	+0.2
101,262	-		IAI47_19375	0.62	-0.5
101,262	-		IAI47_19375	0.62	-0.4
101,262	-		IAI47_19375	0.62	-0.2
101,287	+		IAI47_19375	0.65	+0.3
101,288	-		IAI47_19375	0.65	+0.7
101,288	-		IAI47_19375	0.65	-0.3
101,313	+		IAI47_19375	0.68	-1.3
101,313	+		IAI47_19375	0.68	+2.6
101,360	+		IAI47_19375	0.73	+0.1
101,361	-		IAI47_19375	0.73	+0.2
101,361	-		IAI47_19375	0.73	+0.4
101,361	-		IAI47_19375	0.73	+1.2
101,361	-		IAI47_19375	0.73	-1.5
101,361	-		IAI47_19375	0.73	-1.8
101,405	+		IAI47_19375	0.78	+0.1
101,433	-		IAI47_19375	0.81	+1.3
101,435	+		IAI47_19375	0.81	-1.5
101,435	+		IAI47_19375	0.81	+0.2
101,435	+		IAI47_19375	0.81	+0.3
101,436	-		IAI47_19375	0.81	-1.0
101,436	-		IAI47_19375	0.81	+0.5
101,436	-		IAI47_19375	0.81	-1.8
101,436	-		IAI47_19375	0.81	-0.0
101,436	-		IAI47_19375	0.81	+0.0
101,475	-		IAI47_19375	0.85	+0.8
101,483	+		IAI47_19375	0.86	-0.5
101,678	+				-0.0
101,679	-				+0.0
101,689	+				+1.4
101,689	+				+1.1
101,690	-				+0.1
101,690	-				-1.8
101,691	+				+0.4
101,692	-				-0.9
101,692	-				+2.8
101,713	+				-0.7
101,720	-				-0.2
101,766	-				+0.1
101,766	-				-0.4
101,802	+				+1.2
101,809	-				+0.4
101,816	+				-0.2
101,898	-				+0.5
101,898	-				+1.5
101,951	-		IAI47_19380	0.16	+0.4
101,967	+		IAI47_19380	0.18	-0.9
101,984	+		IAI47_19380	0.21	-0.4
101,994	-		IAI47_19380	0.23	+1.2
102,001	-		IAI47_19380	0.24	+0.5
102,074	-		IAI47_19380	0.37	+0.2
102,092	+		IAI47_19380	0.41	-0.4
102,115	-		IAI47_19380	0.45	+2.8
102,129	-		IAI47_19380	0.47	+0.2
102,145	-		IAI47_19380	0.50	-0.5
102,172	-		IAI47_19380	0.55	-0.2
102,314	-		IAI47_19380	0.80	-0.5
102,377	-				-0.7
102,379	-				+1.2
102,412	-				+1.2
102,471	+				-0.3
102,485	+				+1.2
102,485	+				+0.8
102,486	-				+0.5
102,486	-				+1.8
102,488	+				+0.2
102,488	+				-1.5
102,488	+				-0.8
102,489	-				+1.2
102,489	-				-0.4
102,504	-				+0.7
102,529	+				+0.7
102,530	-				-0.8
102,532	+				-1.2
102,533	-				+0.4
102,533	-				-0.8
102,575	-				+0.4
102,580	+				+0.6
102,593	+				-2.1
102,607	+				+1.4
102,607	+				+0.0
102,607	+				-0.4
102,608	-				+1.1
102,612	+				+0.7
102,612	+				+0.8
102,612	+				-1.5
102,613	-				-0.4
102,613	-				-0.6
102,705	+				-0.5
102,706	-				+0.4
102,706	-				+0.1
102,710	+				+0.1
102,710	+				+0.0
102,710	+				-2.6
102,710	+				-0.0
102,711	-				-0.6
102,711	-				+1.8
102,711	-				-1.8
102,724	+				-0.5
102,725	-				-0.8
102,725	-				+0.0
102,747	+				+0.1
102,747	+				+0.5
102,784	+				+0.1
102,802	-				-0.8
102,837	+				+0.6
102,837	+				-0.4
102,838	-				-1.6
102,838	-				+0.0
102,838	-				+0.0
102,838	-				+0.6
102,887	+				-0.8
102,933	-				-0.2
102,945	+				+0.4
102,979	+				-0.2
102,997	+				+0.2
102,997	+				+1.4
102,997	+				+0.7
102,997	+				+0.8
102,998	-				+0.5
102,998	-				+1.2
102,998	-				+1.0
103,005	+				+1.0
103,005	+				+0.5
103,019	-				+1.0
103,055	+				+0.9
103,056	-				+0.8
103,076	-				-0.5
103,114	+				+0.8
103,114	+				-0.5
103,114	+				-1.0
103,115	-				+0.8
103,115	-				+0.6
103,120	+				+0.2
103,121	-				+0.6
103,203	-		IAI47_19385	0.17	-0.0
103,214	+		IAI47_19385	0.19	+0.2
103,385	+		IAI47_19385	0.56	-1.0
103,413	+		IAI47_19385	0.62	+0.4