Strain Fitness in Pantoea sp. MT58 around IAI47_19215

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
68,934	+		IAI47_19205	0.63	+0.4
68,934	+		IAI47_19205	0.63	-0.6
68,934	+		IAI47_19205	0.63	+0.6
68,934	+		IAI47_19205	0.63	+0.4
68,934	+		IAI47_19205	0.63	-0.2
68,935	-		IAI47_19205	0.63	+1.7
68,935	-		IAI47_19205	0.63	-0.4
68,935	-		IAI47_19205	0.63	+2.8
68,936	+		IAI47_19205	0.63	+1.2
68,936	+		IAI47_19205	0.63	+0.8
68,936	+		IAI47_19205	0.63	+0.7
68,936	+		IAI47_19205	0.63	-0.2
68,936	+		IAI47_19205	0.63	-0.8
68,936	+		IAI47_19205	0.63	-0.2
68,936	+		IAI47_19205	0.63	-0.6
68,936	+		IAI47_19205	0.63	+0.0
68,936	+		IAI47_19205	0.63	+2.2
68,937	-		IAI47_19205	0.63	-0.8
68,937	-		IAI47_19205	0.63	-0.5
68,937	-		IAI47_19205	0.63	-0.6
68,937	-		IAI47_19205	0.63	+1.4
68,937	-		IAI47_19205	0.63	+1.8
68,937	-		IAI47_19205	0.63	+0.4
68,937	-		IAI47_19205	0.63	+0.3
68,937	-		IAI47_19205	0.63	-0.1
68,937	-		IAI47_19205	0.63	-0.5
68,948	+		IAI47_19205	0.65	+0.8
68,977	-		IAI47_19205	0.69	-1.8
68,996	+		IAI47_19205	0.71	+0.3
68,996	+		IAI47_19205	0.71	+2.4
68,996	+		IAI47_19205	0.71	+1.0
68,997	-		IAI47_19205	0.71	+0.5
68,997	-		IAI47_19205	0.71	-0.6
69,086	+		IAI47_19205	0.82	+0.1
69,130	+		IAI47_19205	0.88	+0.1
69,149	-				+0.2
69,164	+				+1.8
69,164	+				+0.6
69,221	+				+0.4
69,221	+				+0.8
69,222	-				-0.2
69,242	-				+0.3
69,285	+				-0.5
69,285	+				+0.9
69,285	+				-0.2
69,286	-				-0.3
69,289	+				+0.8
69,296	+				+0.5
69,297	-				-0.5
69,308	+				-1.8
69,308	+				-0.8
69,309	-				-0.4
69,309	-				-0.8
69,309	-				+0.2
69,309	-				-2.2
69,318	+				-0.8
69,318	+				-1.1
69,318	+				+0.1
69,319	-				-0.7
69,403	+		IAI47_19210	0.18	+0.2
69,403	+		IAI47_19210	0.18	-0.6
69,404	-		IAI47_19210	0.18	+0.8
69,404	-		IAI47_19210	0.18	+0.5
69,454	+		IAI47_19210	0.38	+0.1
69,454	+		IAI47_19210	0.38	-1.3
69,454	+		IAI47_19210	0.38	-1.0
69,454	+		IAI47_19210	0.38	-2.3
69,455	-		IAI47_19210	0.39	+0.4
69,455	-		IAI47_19210	0.39	-1.4
69,455	-		IAI47_19210	0.39	+0.5
69,455	-		IAI47_19210	0.39	-0.2
69,456	+		IAI47_19210	0.39	-0.5
69,456	+		IAI47_19210	0.39	+1.6
69,456	+		IAI47_19210	0.39	+0.2
69,456	+		IAI47_19210	0.39	+0.4
69,457	-		IAI47_19210	0.39	+0.3
69,457	-		IAI47_19210	0.39	+0.5
69,481	+		IAI47_19210	0.49	-0.4
69,481	+		IAI47_19210	0.49	+1.6
69,481	+		IAI47_19210	0.49	-1.8
69,481	+		IAI47_19210	0.49	+1.4
69,481	+		IAI47_19210	0.49	+0.2
69,482	-		IAI47_19210	0.49	+0.0
69,482	-		IAI47_19210	0.49	-1.4
69,482	-		IAI47_19210	0.49	-0.0
69,482	-		IAI47_19210	0.49	+0.8
69,482	-		IAI47_19210	0.49	+0.2
69,482	-		IAI47_19210	0.49	+0.2
69,544	-		IAI47_19210	0.74	+0.8
69,544	-		IAI47_19210	0.74	+0.3
69,544	-		IAI47_19210	0.74	+0.5
69,544	-		IAI47_19210	0.74	+0.2
69,544	-		IAI47_19210	0.74	-0.4
69,559	+		IAI47_19210	0.80	+0.3
69,560	-		IAI47_19210	0.81	+0.1
69,560	-		IAI47_19210	0.81	+1.1
69,632	+				-0.4
69,633	-				-0.8
69,729	+				+0.2
69,729	+				+0.2
69,729	+				+0.6
69,729	+				-0.6
69,729	+				-0.5
69,730	-				-1.0
69,730	-				-1.6
69,730	-				-2.6
69,730	-				+0.5
69,730	-				+1.0
69,730	-				+0.2
69,735	+				+0.7
69,735	+				+1.4
69,735	+				-0.0
69,735	+				-0.8
69,735	+				+0.1
69,735	+				+1.2
69,735	+				+0.6
69,735	+				+0.8
69,735	+				+0.1
69,735	+				-0.8
69,736	-				+0.8
69,736	-				+1.8
69,736	-				+0.8
69,736	-				+1.8
69,736	-				-0.7
69,736	-				+0.4
69,736	-				-1.0
69,736	-				+0.7
69,737	+				+1.4
69,738	-				-0.8
69,738	-				-0.2
69,738	-				+1.0
69,752	+				-0.7
69,753	-				-0.6
69,753	-				-0.0
69,813	-				-0.1
69,836	+				-0.0
69,836	+				+0.8
69,841	+				+0.1
69,841	+				-0.0
69,842	-				-2.6
69,842	-				+0.2
69,842	-				+2.2
69,851	+				-0.2
69,909	-				-2.0
69,918	+				+0.3
69,918	+				+0.2
69,919	-				+0.8
69,940	-				-1.0
69,945	+				-0.6
69,945	+				+0.8
69,945	+				-1.1
69,946	-				-0.8
69,946	-				-0.5
69,988	+				-1.5
69,988	+				-0.1
69,989	-				-1.4
69,989	-				-1.8
70,108	+		IAI47_19215	0.18	-2.2
70,108	+		IAI47_19215	0.18	-0.2
70,109	-		IAI47_19215	0.18	+0.3
70,109	-		IAI47_19215	0.18	-0.8
70,109	-		IAI47_19215	0.18	-2.3
70,109	-		IAI47_19215	0.18	-1.9
70,109	-		IAI47_19215	0.18	-2.5
70,178	-		IAI47_19215	0.25	-1.4
70,178	-		IAI47_19215	0.25	+0.6
70,178	-		IAI47_19215	0.25	-0.4
70,178	-		IAI47_19215	0.25	-1.0
70,208	+		IAI47_19215	0.28	-1.5
70,209	-		IAI47_19215	0.28	+0.2
70,261	-		IAI47_19215	0.34	-1.0
70,270	+		IAI47_19215	0.35	-1.1
70,271	-		IAI47_19215	0.35	-0.5
70,271	-		IAI47_19215	0.35	+0.5
70,282	+		IAI47_19215	0.36	-0.8
70,283	-		IAI47_19215	0.36	-0.4
70,325	+		IAI47_19215	0.40	-0.4
70,326	-		IAI47_19215	0.40	-0.2
70,326	-		IAI47_19215	0.40	-1.0
70,326	-		IAI47_19215	0.40	-1.3
70,328	+		IAI47_19215	0.41	-2.6
70,329	-		IAI47_19215	0.41	-1.5
70,403	+		IAI47_19215	0.48	-1.3
70,403	+		IAI47_19215	0.48	-0.9
70,473	+		IAI47_19215	0.55	-1.3
70,473	+		IAI47_19215	0.55	-0.2
70,473	+		IAI47_19215	0.55	-2.2
70,473	+		IAI47_19215	0.55	-1.5
70,473	+		IAI47_19215	0.55	-1.6
70,473	+		IAI47_19215	0.55	-1.5
70,473	+		IAI47_19215	0.55	-0.5
70,473	+		IAI47_19215	0.55	-2.0
70,473	+		IAI47_19215	0.55	-2.1
70,473	+		IAI47_19215	0.55	-0.8
70,473	+		IAI47_19215	0.55	-1.8
70,473	+		IAI47_19215	0.55	-2.0
70,473	+		IAI47_19215	0.55	-0.2
70,473	+		IAI47_19215	0.55	-1.1
70,474	-		IAI47_19215	0.56	-0.5
70,474	-		IAI47_19215	0.56	-1.8
70,474	-		IAI47_19215	0.56	-1.3
70,474	-		IAI47_19215	0.56	-1.8
70,474	-		IAI47_19215	0.56	+1.2
70,474	-		IAI47_19215	0.56	-3.0
70,474	-		IAI47_19215	0.56	-0.9
70,474	-		IAI47_19215	0.56	-2.0
70,474	-		IAI47_19215	0.56	-1.2
70,474	-		IAI47_19215	0.56	-2.0
70,474	-		IAI47_19215	0.56	-0.2
70,474	-		IAI47_19215	0.56	-2.3
70,474	-		IAI47_19215	0.56	-0.4
70,474	-		IAI47_19215	0.56	+0.7
70,474	-		IAI47_19215	0.56	-0.2
70,474	-		IAI47_19215	0.56	-2.3
70,474	-		IAI47_19215	0.56	+0.8
70,474	-		IAI47_19215	0.56	-0.5
70,477	+		IAI47_19215	0.56	-2.0
70,477	+		IAI47_19215	0.56	+0.8
70,477	+		IAI47_19215	0.56	-0.2
70,477	+		IAI47_19215	0.56	-1.0
70,477	+		IAI47_19215	0.56	-1.4
70,478	-		IAI47_19215	0.56	-2.8
70,478	-		IAI47_19215	0.56	-2.8
70,478	-		IAI47_19215	0.56	-1.0
70,478	-		IAI47_19215	0.56	-0.5
70,478	-		IAI47_19215	0.56	-1.8
70,478	-		IAI47_19215	0.56	-1.2
70,478	-		IAI47_19215	0.56	-0.2
70,478	-		IAI47_19215	0.56	-1.8
70,478	-		IAI47_19215	0.56	-2.6
70,478	-		IAI47_19215	0.56	-0.8
70,478	-		IAI47_19215	0.56	+0.0
70,555	+		IAI47_19215	0.64	-2.5
70,555	+		IAI47_19215	0.64	+0.0
70,555	+		IAI47_19215	0.64	-1.8
70,555	+		IAI47_19215	0.64	-2.8
70,556	-		IAI47_19215	0.64	-0.5
70,558	+		IAI47_19215	0.64	-3.1
70,558	+		IAI47_19215	0.64	-0.5
70,558	+		IAI47_19215	0.64	-1.3
70,558	+		IAI47_19215	0.64	-2.9
70,559	-		IAI47_19215	0.64	-0.0
70,626	+		IAI47_19215	0.71	-1.8
70,668	+		IAI47_19215	0.76	+0.8
70,668	+		IAI47_19215	0.76	-0.5
70,669	-		IAI47_19215	0.76	-2.6
70,689	-		IAI47_19215	0.78	-1.5
70,773	+		IAI47_19215	0.86	-1.8
70,793	+		IAI47_19215	0.88	+0.1
70,793	+		IAI47_19215	0.88	-2.6
70,794	-		IAI47_19215	0.88	-1.4
70,813	+				-1.8
70,813	+				-1.8
70,813	+				-1.3
70,814	-				-0.4
70,814	-				-0.1
70,907	+				+0.4
70,908	-				-1.8
70,908	-				+0.1
70,908	-				+0.8
70,914	+				+0.8
70,915	-				-1.5
70,965	+				+0.8
71,121	+				-0.9
71,121	+				+0.0
71,122	-				+0.5
71,122	-				+0.1
71,130	+				+0.2
71,157	+				-2.0
71,179	+				-0.8
71,179	+				+0.3
71,180	-				-1.3
71,180	-				+1.0
71,227	+				+1.8
71,335	+				+0.6
71,336	-				+0.4
71,397	+				-0.2
71,397	+				-0.2
71,397	+				-1.8
71,398	-				-1.0
71,398	-				-0.2
71,398	-				-0.4
71,399	+				-0.1
71,399	+				+0.7
71,399	+				-0.5
71,399	+				+0.6
71,400	-				-0.9
71,400	-				-0.5
71,400	-				+0.1
71,400	-				-0.2
71,412	-				+0.5
71,412	-				+0.2
71,469	+		IAI47_19220	0.15	+0.6
71,469	+		IAI47_19220	0.15	-0.7
71,469	+		IAI47_19220	0.15	-2.5
71,469	+		IAI47_19220	0.15	+0.5
71,469	+		IAI47_19220	0.15	+1.8
71,469	+		IAI47_19220	0.15	-0.2
71,470	-		IAI47_19220	0.15	+0.3
71,470	-		IAI47_19220	0.15	+0.3
71,470	-		IAI47_19220	0.15	+0.2
71,470	-		IAI47_19220	0.15	+0.2
71,501	+		IAI47_19220	0.22	+1.0
71,501	+		IAI47_19220	0.22	+0.8
71,502	-		IAI47_19220	0.22	+0.8
71,502	-		IAI47_19220	0.22	-0.3
71,502	-		IAI47_19220	0.22	+1.3
71,512	+		IAI47_19220	0.25	-0.8
71,512	+		IAI47_19220	0.25	-1.2
71,512	+		IAI47_19220	0.25	-0.2
71,513	-		IAI47_19220	0.25	-0.8
71,513	-		IAI47_19220	0.25	-1.5
71,545	+		IAI47_19220	0.32	+0.8
71,545	+		IAI47_19220	0.32	-0.0
71,545	+		IAI47_19220	0.32	-0.8
71,546	-		IAI47_19220	0.32	-0.2
71,546	-		IAI47_19220	0.32	+0.1
71,546	-		IAI47_19220	0.32	-1.3
71,546	-		IAI47_19220	0.32	+1.2
71,556	+		IAI47_19220	0.34	-1.5
71,556	+		IAI47_19220	0.34	-0.1
71,556	+		IAI47_19220	0.34	-0.6
71,557	-		IAI47_19220	0.35	-0.8
71,557	-		IAI47_19220	0.35	+2.2
71,557	-		IAI47_19220	0.35	+1.7
71,573	-		IAI47_19220	0.38	+0.2
71,626	+		IAI47_19220	0.50	+0.1
71,626	+		IAI47_19220	0.50	+1.2
71,626	+		IAI47_19220	0.50	+0.5
71,627	-		IAI47_19220	0.50	+0.7
71,627	-		IAI47_19220	0.50	+0.4
71,761	-		IAI47_19220	0.80	+0.6
71,782	+		IAI47_19220	0.85	-0.8
71,829	+				-2.0
71,841	+				+1.0
71,849	-				-0.5
71,874	+				+0.1
71,875	-				-0.7
71,877	+				-1.0
71,877	+				+0.3
71,878	-				+0.0
71,886	-				+0.3