Strain Fitness in Pantoea sp. MT58 around IAI47_18510

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
3,936,419	-		IAI47_18505	0.22	-1.8
3,936,443	-		IAI47_18505	0.24	-0.4
3,936,443	-		IAI47_18505	0.24	-0.9
3,936,589	+		IAI47_18505	0.35	-0.8
3,936,590	-		IAI47_18505	0.35	+0.1
3,936,590	-		IAI47_18505	0.35	-0.9
3,936,611	-		IAI47_18505	0.37	-0.5
3,936,611	-		IAI47_18505	0.37	-0.0
3,936,647	-		IAI47_18505	0.40	-1.1
3,936,742	+		IAI47_18505	0.47	-2.4
3,936,835	-		IAI47_18505	0.55	+0.5
3,936,835	-		IAI47_18505	0.55	-0.7
3,936,837	-		IAI47_18505	0.55	-0.4
3,936,912	-		IAI47_18505	0.61	-0.4
3,936,912	-		IAI47_18505	0.61	-0.8
3,936,912	-		IAI47_18505	0.61	-2.7
3,936,912	-		IAI47_18505	0.61	-0.5
3,936,912	-		IAI47_18505	0.61	-0.5
3,936,912	-		IAI47_18505	0.61	-1.5
3,936,926	+		IAI47_18505	0.62	-1.5
3,936,943	-		IAI47_18505	0.63	+0.9
3,936,956	-		IAI47_18505	0.64	-0.3
3,936,968	-		IAI47_18505	0.65	-0.8
3,936,968	-		IAI47_18505	0.65	-1.2
3,936,968	-		IAI47_18505	0.65	-1.8
3,937,031	-		IAI47_18505	0.70	-2.8
3,937,031	-		IAI47_18505	0.70	-0.5
3,937,135	-		IAI47_18505	0.78	-0.2
3,937,135	-		IAI47_18505	0.78	-1.2
3,937,135	-		IAI47_18505	0.78	-1.2
3,937,245	-		IAI47_18505	0.87	-1.7
3,937,245	-		IAI47_18505	0.87	+0.2
3,937,245	-		IAI47_18505	0.87	-0.4
3,937,257	-		IAI47_18505	0.88	-0.2
3,937,257	-		IAI47_18505	0.88	+0.2
3,937,257	-		IAI47_18505	0.88	-0.9
3,937,257	-		IAI47_18505	0.88	-0.2
3,937,257	-		IAI47_18505	0.88	-0.8
3,937,257	-		IAI47_18505	0.88	-0.3
3,937,257	-		IAI47_18505	0.88	-2.0
3,937,369	-				-1.5
3,937,369	-				+1.6
3,937,369	-				-1.1
3,937,369	-				-1.2
3,937,369	-				-2.1
3,937,405	+				-1.7
3,937,406	-				-1.4
3,937,419	+				-1.2
3,937,420	-				+0.9
3,937,427	-				+1.4
3,937,427	-				+0.5
3,937,466	+				-1.2
3,937,473	+				+1.1
3,937,573	-		IAI47_18510	0.15	-1.4
3,937,629	+		IAI47_18510	0.20	+0.0
3,937,715	+		IAI47_18510	0.27	-1.7
3,937,715	+		IAI47_18510	0.27	-0.5
3,937,715	+		IAI47_18510	0.27	-1.7
3,937,716	-		IAI47_18510	0.27	-0.4
3,937,716	-		IAI47_18510	0.27	+0.8
3,937,740	+		IAI47_18510	0.29	-0.7
3,937,740	+		IAI47_18510	0.29	-1.0
3,937,741	-		IAI47_18510	0.30	-0.5
3,937,741	-		IAI47_18510	0.30	-1.8
3,937,741	-		IAI47_18510	0.30	-0.8
3,937,742	-		IAI47_18510	0.30	-0.5
3,937,806	-		IAI47_18510	0.35	+0.7
3,937,860	+		IAI47_18510	0.40	-2.0
3,937,860	+		IAI47_18510	0.40	-1.7
3,937,860	+		IAI47_18510	0.40	-0.9
3,937,861	-		IAI47_18510	0.40	-1.5
3,937,861	-		IAI47_18510	0.40	-1.4
3,938,019	+		IAI47_18510	0.54	-1.0
3,938,020	-		IAI47_18510	0.54	-1.2
3,938,020	-		IAI47_18510	0.54	-0.2
3,938,020	-		IAI47_18510	0.54	-2.8
3,938,088	+		IAI47_18510	0.60	+0.8
3,938,211	-		IAI47_18510	0.70	-0.0
3,938,211	-		IAI47_18510	0.70	-1.2
3,938,308	+		IAI47_18510	0.79	-1.4
3,938,322	+		IAI47_18510	0.80	+0.8
3,938,322	+		IAI47_18510	0.80	-0.3
3,938,322	+		IAI47_18510	0.80	-0.1
3,938,323	-		IAI47_18510	0.80	+0.2
3,938,323	-		IAI47_18510	0.80	-0.7
3,938,323	-		IAI47_18510	0.80	+0.5
3,938,323	-		IAI47_18510	0.80	+0.0
3,938,323	-		IAI47_18510	0.80	-1.2
3,938,323	-		IAI47_18510	0.80	+0.3
3,938,352	+		IAI47_18510	0.83	-0.8
3,938,352	+		IAI47_18510	0.83	-0.8
3,938,352	+		IAI47_18510	0.83	-1.5
3,938,353	-		IAI47_18510	0.83	-0.3
3,938,353	-		IAI47_18510	0.83	-0.2
3,938,353	-		IAI47_18510	0.83	-0.6
3,938,353	-		IAI47_18510	0.83	-0.4
3,938,353	-		IAI47_18510	0.83	-1.4
3,938,353	-		IAI47_18510	0.83	-1.0
3,938,353	-		IAI47_18510	0.83	-0.2
3,938,355	+		IAI47_18510	0.83	+0.8
3,938,355	+		IAI47_18510	0.83	-0.5
3,938,355	+		IAI47_18510	0.83	-2.3
3,938,355	+		IAI47_18510	0.83	-0.8
3,938,355	+		IAI47_18510	0.83	-1.5
3,938,356	-		IAI47_18510	0.83	-1.1
3,938,356	-		IAI47_18510	0.83	-0.9
3,938,356	-		IAI47_18510	0.83	-0.4
3,938,356	-		IAI47_18510	0.83	+2.4
3,938,356	-		IAI47_18510	0.83	-1.9
3,938,356	-		IAI47_18510	0.83	-2.5
3,938,356	-		IAI47_18510	0.83	+0.4
3,938,358	+		IAI47_18510	0.83	-0.1
3,938,358	+		IAI47_18510	0.83	-1.8
3,938,358	+		IAI47_18510	0.83	+0.0
3,938,358	+		IAI47_18510	0.83	-2.2
3,938,358	+		IAI47_18510	0.83	-0.4
3,938,359	-		IAI47_18510	0.83	-1.3
3,938,359	-		IAI47_18510	0.83	-2.5
3,938,359	-		IAI47_18510	0.83	+0.1
3,938,359	-		IAI47_18510	0.83	-1.2
3,938,367	-		IAI47_18510	0.84	-0.4
3,938,367	-		IAI47_18510	0.84	+1.1
3,938,490	+				-0.5
3,938,491	-				-2.1
3,938,508	+				-1.4
3,938,509	-				-1.2
3,938,515	+				-1.3
3,938,515	+				-1.4
3,938,515	+				-1.5
3,938,515	+				+0.1
3,938,516	-				-1.1
3,938,516	-				-0.4
3,938,516	-				-1.5
3,938,516	-				+0.6
3,938,604	-				-0.0
3,938,604	-				-0.2
3,938,604	-				+1.1
3,938,626	+				-0.0
3,938,626	+				-2.2
3,938,626	+				-0.8
3,938,626	+				-1.7
3,938,626	+				-2.7
3,938,626	+				-1.5
3,938,626	+				+1.0
3,938,626	+				-3.5
3,938,626	+				-0.2
3,938,626	+				-0.4
3,938,626	+				-0.8
3,938,626	+				+0.6
3,938,626	+				-0.9
3,938,627	-				-0.4
3,938,627	-				+0.4
3,938,627	-				-0.5
3,938,627	-				+0.1
3,938,627	-				-0.5
3,938,627	-				+0.2
3,938,627	-				-0.2
3,938,627	-				-0.9
3,938,627	-				+0.6
3,938,627	-				-0.1
3,938,627	-				-1.0
3,938,627	-				-0.1
3,938,627	-				-0.3
3,938,664	-		IAI47_18515	0.12	+1.2
3,938,664	-		IAI47_18515	0.12	+1.0
3,938,689	-		IAI47_18515	0.14	-0.2
3,938,689	-		IAI47_18515	0.14	-1.1
3,938,694	+		IAI47_18515	0.14	-1.2
3,938,694	+		IAI47_18515	0.14	+1.5
3,938,694	+		IAI47_18515	0.14	+0.2
3,938,695	-		IAI47_18515	0.14	+1.1
3,938,695	-		IAI47_18515	0.14	+1.1
3,938,695	-		IAI47_18515	0.14	+0.3
3,938,695	-		IAI47_18515	0.14	-0.8
3,938,763	+		IAI47_18515	0.21	-1.1
3,938,764	-		IAI47_18515	0.21	+1.6
3,938,764	-		IAI47_18515	0.21	-2.4
3,938,764	-		IAI47_18515	0.21	-1.1
3,938,764	-		IAI47_18515	0.21	-0.5
3,938,764	-		IAI47_18515	0.21	-0.6
3,938,764	-		IAI47_18515	0.21	+0.2
3,938,764	-		IAI47_18515	0.21	-0.2
3,938,770	+		IAI47_18515	0.22	-0.0
3,938,770	+		IAI47_18515	0.22	-1.5
3,938,770	+		IAI47_18515	0.22	+0.8
3,938,890	+		IAI47_18515	0.33	-0.2
3,938,891	-		IAI47_18515	0.33	-2.2
3,938,891	-		IAI47_18515	0.33	+0.8
3,938,891	-		IAI47_18515	0.33	-0.6
3,938,960	-		IAI47_18515	0.40	+0.8
3,939,004	+		IAI47_18515	0.44	-1.0
3,939,004	+		IAI47_18515	0.44	+0.1
3,939,004	+		IAI47_18515	0.44	-1.4
3,939,005	-		IAI47_18515	0.44	-0.5
3,939,005	-		IAI47_18515	0.44	-1.2
3,939,005	-		IAI47_18515	0.44	-0.0
3,939,005	-		IAI47_18515	0.44	-0.4
3,939,005	-		IAI47_18515	0.44	-0.3
3,939,008	+		IAI47_18515	0.44	+0.6
3,939,009	-		IAI47_18515	0.44	+0.8
3,939,026	+		IAI47_18515	0.46	-1.1
3,939,026	+		IAI47_18515	0.46	+1.0
3,939,027	-		IAI47_18515	0.46	-1.2
3,939,027	-		IAI47_18515	0.46	-0.9
3,939,067	-		IAI47_18515	0.50	-0.3
3,939,067	-		IAI47_18515	0.50	-1.3
3,939,075	+		IAI47_18515	0.51	-1.0
3,939,075	+		IAI47_18515	0.51	+0.4
3,939,075	+		IAI47_18515	0.51	-0.3
3,939,075	+		IAI47_18515	0.51	+0.5
3,939,075	+		IAI47_18515	0.51	-0.4
3,939,076	-		IAI47_18515	0.51	+0.9
3,939,076	-		IAI47_18515	0.51	-0.1
3,939,076	-		IAI47_18515	0.51	-0.2
3,939,076	-		IAI47_18515	0.51	+0.2
3,939,076	-		IAI47_18515	0.51	+1.5
3,939,086	+		IAI47_18515	0.52	-0.4
3,939,087	-		IAI47_18515	0.52	-0.8
3,939,091	+		IAI47_18515	0.52	+0.2
3,939,091	+		IAI47_18515	0.52	-0.5
3,939,092	-		IAI47_18515	0.52	+0.1
3,939,142	+		IAI47_18515	0.57	-0.4
3,939,142	+		IAI47_18515	0.57	+0.2
3,939,142	+		IAI47_18515	0.57	-0.8
3,939,142	+		IAI47_18515	0.57	-1.0
3,939,163	+		IAI47_18515	0.59	-1.4
3,939,163	+		IAI47_18515	0.59	-0.1
3,939,172	+		IAI47_18515	0.60	-0.5
3,939,184	+		IAI47_18515	0.61	-1.7
3,939,184	+		IAI47_18515	0.61	-0.8
3,939,184	+		IAI47_18515	0.61	+1.0
3,939,184	+		IAI47_18515	0.61	+0.2
3,939,184	+		IAI47_18515	0.61	-1.4
3,939,185	-		IAI47_18515	0.61	-0.3
3,939,209	-		IAI47_18515	0.63	-0.0
3,939,240	+		IAI47_18515	0.66	+1.4
3,939,241	-		IAI47_18515	0.66	-0.7
3,939,241	-		IAI47_18515	0.66	+0.1
3,939,241	-		IAI47_18515	0.66	+0.4
3,939,306	+		IAI47_18515	0.73	-2.4
3,939,307	-		IAI47_18515	0.73	-0.2
3,939,307	-		IAI47_18515	0.73	+0.3
3,939,347	+		IAI47_18515	0.77	+0.1
3,939,347	+		IAI47_18515	0.77	+1.7
3,939,347	+		IAI47_18515	0.77	-1.5
3,939,347	+		IAI47_18515	0.77	-0.5
3,939,348	-		IAI47_18515	0.77	+1.4
3,939,348	-		IAI47_18515	0.77	-0.5
3,939,348	-		IAI47_18515	0.77	-0.5
3,939,396	+		IAI47_18515	0.81	+1.4
3,939,396	+		IAI47_18515	0.81	-2.0
3,939,396	+		IAI47_18515	0.81	-2.2
3,939,396	+		IAI47_18515	0.81	-0.2
3,939,396	+		IAI47_18515	0.81	-0.2
3,939,396	+		IAI47_18515	0.81	-0.8
3,939,397	-		IAI47_18515	0.81	-1.9
3,939,397	-		IAI47_18515	0.81	-0.8
3,939,397	-		IAI47_18515	0.81	-1.2
3,939,397	-		IAI47_18515	0.81	+0.8
3,939,397	-		IAI47_18515	0.81	+0.3
3,939,399	+		IAI47_18515	0.82	-1.2
3,939,399	+		IAI47_18515	0.82	-1.5
3,939,399	+		IAI47_18515	0.82	-0.3
3,939,399	+		IAI47_18515	0.82	-0.3
3,939,399	+		IAI47_18515	0.82	-0.3
3,939,400	-		IAI47_18515	0.82	-0.0
3,939,400	-		IAI47_18515	0.82	+0.1
3,939,400	-		IAI47_18515	0.82	-0.4
3,939,400	-		IAI47_18515	0.82	+0.0
3,939,537	-				+0.1