Strain Fitness in Pantoea sp. MT58 around IAI47_18145

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
3,863,261	-				+1.8
3,863,836	-		IAI47_18145	0.50	+0.2
3,863,836	-		IAI47_18145	0.50	-0.2
3,864,169	-		IAI47_18145	0.78	-1.8
3,864,169	-		IAI47_18145	0.78	-2.2
3,864,169	-		IAI47_18145	0.78	-1.5
3,864,202	-		IAI47_18145	0.81	+0.8
3,864,223	-		IAI47_18145	0.82	-1.5
3,864,455	-				+0.1
3,864,457	-				-1.1
3,864,466	-				-0.8
3,864,466	-				+0.7
3,864,477	-				+0.2
3,864,531	-				+0.8
3,864,737	-				-0.6
3,864,762	-				-0.8
3,864,762	-				-0.4
3,864,762	-				+1.8
3,864,826	-				+0.2
3,864,826	-				+1.8
3,864,826	-				-0.0
3,864,826	-				-0.6
3,864,826	-				-0.8
3,864,826	-				-0.6
3,864,846	-				-0.9
3,864,846	-				-1.5
3,864,846	-				-0.2
3,864,846	-				-0.5
3,864,846	-				-0.2
3,864,859	-				+0.4
3,864,865	-				-1.2
3,864,865	-				+0.1
3,865,119	+				+1.0
3,865,126	+				-0.5
3,865,130	-				+0.1
3,865,170	+				-2.0
3,865,170	+				-0.0
3,865,170	+				+0.2
3,865,170	+				+0.5
3,865,170	+				-0.5
3,865,170	+				-1.4
3,865,170	+				-1.4
3,865,171	-				-0.3
3,865,171	-				-0.8
3,865,171	-				+0.5
3,865,171	-				+0.8
3,865,195	+				-0.8
3,865,196	-				-0.7
3,865,249	+				+0.0
3,865,254	+				-0.0
3,865,255	-				-0.3
3,865,259	+				+0.0
3,865,260	-				+1.6
3,865,279	+				-0.3
3,865,279	+				+0.6
3,865,344	+				-2.0
3,865,344	+				-1.3
3,865,344	+				-2.2
3,865,344	+				-0.8
3,865,344	+				+0.2
3,865,344	+				+0.1
3,865,344	+				+0.3
3,865,345	-				-1.4
3,865,345	-				-0.7
3,865,345	-				+0.4
3,865,345	-				+1.6
3,865,345	-				+1.8
3,865,345	-				+0.7
3,865,345	-				-0.2
3,865,345	-				+0.8
3,865,345	-				+0.5
3,865,349	+				-2.4
3,865,349	+				+1.8
3,865,349	+				+0.3
3,865,350	-				+1.4
3,865,350	-				+0.0
3,865,383	+				-2.8
3,865,383	+				-0.4
3,865,383	+				+1.5
3,865,383	+				-0.2
3,865,383	+				-0.4
3,865,383	+				-1.0
3,865,383	+				-0.5
3,865,383	+				+1.1
3,865,383	+				+0.3
3,865,383	+				+1.4
3,865,383	+				+1.8
3,865,383	+				+0.5
3,865,383	+				-0.6
3,865,383	+				-1.9
3,865,383	+				+1.1
3,865,383	+				-0.1
3,865,383	+				-1.0
3,865,384	-				+0.7
3,865,384	-				+0.1
3,865,384	-				+0.5
3,865,384	-				+0.8
3,865,384	-				-1.5
3,865,384	-				-0.9
3,865,384	-				-1.2
3,865,384	-				+0.5
3,865,384	-				+0.4
3,865,384	-				+1.1
3,865,384	-				-0.6
3,865,384	-				-0.6
3,865,384	-				-1.1
3,865,384	-				+0.8
3,865,384	-				-0.2
3,865,384	-				+0.6
3,865,384	-				+1.1
3,865,384	-				+0.2
3,865,386	-				+0.1
3,865,398	+				-0.6
3,865,399	-				-0.2
3,865,413	-				-1.1