Strain Fitness in Pantoea sp. MT58 around IAI47_17885

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
3,796,618	+		IAI47_17875	0.23	+0.3
3,796,618	+		IAI47_17875	0.23	+0.8
3,796,618	+		IAI47_17875	0.23	+0.4
3,796,618	+		IAI47_17875	0.23	-1.6
3,796,619	-		IAI47_17875	0.24	+1.4
3,796,619	-		IAI47_17875	0.24	-1.5
3,796,628	+		IAI47_17875	0.25	-0.8
3,796,628	+		IAI47_17875	0.25	-0.8
3,796,629	-		IAI47_17875	0.25	+0.8
3,796,629	-		IAI47_17875	0.25	+0.4
3,796,685	+		IAI47_17875	0.36	-0.7
3,796,744	+		IAI47_17875	0.48	+0.1
3,796,744	+		IAI47_17875	0.48	-0.6
3,796,744	+		IAI47_17875	0.48	-1.2
3,796,744	+		IAI47_17875	0.48	-0.5
3,796,744	+		IAI47_17875	0.48	+0.1
3,796,744	+		IAI47_17875	0.48	-0.6
3,796,744	+		IAI47_17875	0.48	-0.5
3,796,745	-		IAI47_17875	0.48	-2.0
3,796,745	-		IAI47_17875	0.48	+0.5
3,796,745	-		IAI47_17875	0.48	+0.8
3,796,745	-		IAI47_17875	0.48	-0.8
3,796,745	-		IAI47_17875	0.48	+0.5
3,796,745	-		IAI47_17875	0.48	-1.2
3,796,745	-		IAI47_17875	0.48	+0.1
3,796,745	-		IAI47_17875	0.48	+1.1
3,796,745	-		IAI47_17875	0.48	-1.8
3,796,745	-		IAI47_17875	0.48	-1.1
3,796,745	-		IAI47_17875	0.48	+0.3
3,796,745	-		IAI47_17875	0.48	-1.2
3,796,745	-		IAI47_17875	0.48	-0.4
3,796,745	-		IAI47_17875	0.48	-0.7
3,796,745	-		IAI47_17875	0.48	-1.8
3,796,748	+		IAI47_17875	0.48	-1.0
3,796,748	+		IAI47_17875	0.48	-0.1
3,796,748	+		IAI47_17875	0.48	-1.5
3,796,748	+		IAI47_17875	0.48	-0.7
3,796,748	+		IAI47_17875	0.48	-0.5
3,796,749	-		IAI47_17875	0.48	-0.7
3,796,749	-		IAI47_17875	0.48	+0.0
3,796,749	-		IAI47_17875	0.48	-0.4
3,796,749	-		IAI47_17875	0.48	-1.7
3,796,749	-		IAI47_17875	0.48	+0.1
3,796,749	-		IAI47_17875	0.48	-2.6
3,796,749	-		IAI47_17875	0.48	+0.0
3,796,749	-		IAI47_17875	0.48	+0.1
3,796,749	-		IAI47_17875	0.48	-1.6
3,796,783	+		IAI47_17875	0.55	-0.9
3,796,783	+		IAI47_17875	0.55	-0.2
3,796,783	+		IAI47_17875	0.55	+0.8
3,796,783	+		IAI47_17875	0.55	+0.6
3,796,783	+		IAI47_17875	0.55	+0.1
3,796,783	+		IAI47_17875	0.55	-0.2
3,796,783	+		IAI47_17875	0.55	-1.0
3,796,783	+		IAI47_17875	0.55	-0.4
3,796,783	+		IAI47_17875	0.55	-0.0
3,796,783	+		IAI47_17875	0.55	+0.1
3,796,783	+		IAI47_17875	0.55	-0.2
3,796,783	+		IAI47_17875	0.55	+0.5
3,796,783	+		IAI47_17875	0.55	+0.5
3,796,784	-		IAI47_17875	0.55	-2.2
3,796,784	-		IAI47_17875	0.55	-0.9
3,796,784	-		IAI47_17875	0.55	-2.4
3,796,784	-		IAI47_17875	0.55	-0.6
3,796,784	-		IAI47_17875	0.55	-1.5
3,796,784	-		IAI47_17875	0.55	-0.9
3,796,784	-		IAI47_17875	0.55	-1.6
3,796,784	-		IAI47_17875	0.55	-0.2
3,796,784	-		IAI47_17875	0.55	-0.4
3,796,890	+		IAI47_17875	0.75	-0.6
3,796,890	+		IAI47_17875	0.75	-0.2
3,796,891	-		IAI47_17875	0.76	-0.2
3,796,891	-		IAI47_17875	0.76	-0.9
3,796,921	-		IAI47_17875	0.81	-1.0
3,796,921	-		IAI47_17875	0.81	-0.2
3,796,921	-		IAI47_17875	0.81	-1.6
3,796,921	-		IAI47_17875	0.81	+0.8
3,796,921	-				-0.2
3,796,921	-		IAI47_17875	0.81	+2.0
3,796,921	-		IAI47_17875	0.81	+1.6
3,796,975	+				+0.0
3,796,975	+				-1.1
3,796,975	+				+0.5
3,796,976	-				+0.6
3,796,976	-				-0.3
3,796,976	-				+0.6
3,796,993	+				+0.4
3,797,048	+				+1.4
3,797,048	+				+2.4
3,797,048	+				+1.1
3,797,048	+				-0.4
3,797,049	-				+1.8
3,797,049	-				-0.4
3,797,108	+				+0.5
3,797,108	+				-0.7
3,797,109	-				+0.5
3,797,146	+		IAI47_17880	0.18	-1.5
3,797,146	+		IAI47_17880	0.18	-0.2
3,797,175	-		IAI47_17880	0.32	+0.5
3,797,181	-		IAI47_17880	0.35	+1.0
3,797,197	-		IAI47_17880	0.42	-1.2
3,797,218	-		IAI47_17880	0.52	-0.4
3,797,218	-		IAI47_17880	0.52	+0.1
3,797,235	+		IAI47_17880	0.60	+1.4
3,797,235	+		IAI47_17880	0.60	-1.4
3,797,235	+		IAI47_17880	0.60	-0.3
3,797,235	+		IAI47_17880	0.60	-0.7
3,797,235	+		IAI47_17880	0.60	+0.0
3,797,235	+		IAI47_17880	0.60	-2.4
3,797,235	+		IAI47_17880	0.60	+0.2
3,797,236	-		IAI47_17880	0.61	+2.1
3,797,236	-		IAI47_17880	0.61	-0.6
3,797,236	-		IAI47_17880	0.61	+0.8
3,797,236	-		IAI47_17880	0.61	-0.5
3,797,296	-		IAI47_17880	0.89	+1.1
3,797,346	+				-1.3
3,797,346	+				-1.5
3,797,347	-				+0.1
3,797,347	-				-0.5
3,797,351	-				+0.2
3,797,376	+				+1.5
3,797,391	-				+0.6
3,797,404	-				-2.0
3,797,404	-				+1.9
3,797,404	-				-1.0
3,797,409	+				-0.8
3,797,409	+				+0.1
3,797,409	+				-0.2
3,797,409	+				+1.5
3,797,409	+				+0.1
3,797,415	+				+1.2
3,797,419	-				-0.0
3,797,419	-				+1.5
3,797,441	+				+0.4
3,797,442	-				-0.8
3,797,442	-				-0.2
3,797,444	+				-0.2
3,797,445	-				+0.8
3,797,445	-				+0.0
3,797,451	+				+0.4
3,797,452	-				-0.8
3,797,452	-				-1.5
3,797,452	-				-0.6
3,797,452	-				+0.5
3,797,452	-				-0.3
3,797,520	-				+0.3
3,797,562	+				-0.2
3,797,562	+				+1.1
3,797,563	-				+0.8
3,797,626	+		IAI47_17885	0.11	+0.0
3,797,648	+		IAI47_17885	0.12	+1.6
3,797,648	+		IAI47_17885	0.12	+0.1
3,797,648	+		IAI47_17885	0.12	+0.4
3,797,648	+		IAI47_17885	0.12	-1.1
3,797,648	+		IAI47_17885	0.12	-0.2
3,797,648	+		IAI47_17885	0.12	-0.8
3,797,649	-		IAI47_17885	0.12	-1.2
3,797,649	-		IAI47_17885	0.12	-0.3
3,797,649	-		IAI47_17885	0.12	+3.1
3,797,654	+		IAI47_17885	0.13	+0.1
3,797,655	-		IAI47_17885	0.13	-0.8
3,797,655	-		IAI47_17885	0.13	+0.5
3,797,704	+		IAI47_17885	0.17	-0.5
3,797,704	+		IAI47_17885	0.17	-0.0
3,797,704	+		IAI47_17885	0.17	+1.6
3,797,705	-		IAI47_17885	0.17	-0.2
3,797,705	-		IAI47_17885	0.17	+0.4
3,797,705	-		IAI47_17885	0.17	-0.4
3,797,733	+		IAI47_17885	0.19	+0.6
3,797,733	+		IAI47_17885	0.19	-0.9
3,797,733	+		IAI47_17885	0.19	+3.3
3,797,733	+		IAI47_17885	0.19	-0.2
3,797,733	+		IAI47_17885	0.19	-0.3
3,797,733	+		IAI47_17885	0.19	-0.0
3,797,733	+		IAI47_17885	0.19	+0.2
3,797,733	+		IAI47_17885	0.19	-0.3
3,797,734	-		IAI47_17885	0.19	-0.1
3,797,734	-		IAI47_17885	0.19	-0.4
3,797,734	-		IAI47_17885	0.19	-0.5
3,797,750	-		IAI47_17885	0.20	-0.2
3,797,750	-		IAI47_17885	0.20	-2.5
3,797,750	-		IAI47_17885	0.20	+2.1
3,797,795	+		IAI47_17885	0.24	-0.5
3,797,796	-		IAI47_17885	0.24	+1.1
3,797,821	+		IAI47_17885	0.25	-2.2
3,797,822	-		IAI47_17885	0.26	-0.4
3,797,848	-		IAI47_17885	0.28	+1.1
3,797,891	+		IAI47_17885	0.31	-0.2
3,797,891	+		IAI47_17885	0.31	-0.0
3,797,942	-		IAI47_17885	0.35	-0.2
3,797,963	-		IAI47_17885	0.36	-1.2
3,797,963	-		IAI47_17885	0.36	-0.5
3,797,969	+		IAI47_17885	0.37	+0.2
3,797,969	+		IAI47_17885	0.37	-0.5
3,797,970	-		IAI47_17885	0.37	-1.8
3,797,975	+		IAI47_17885	0.37	+0.5
3,797,975	+		IAI47_17885	0.37	-1.0
3,797,975	+		IAI47_17885	0.37	-0.2
3,797,975	+		IAI47_17885	0.37	+0.2
3,797,976	-		IAI47_17885	0.37	-0.2
3,797,976	-		IAI47_17885	0.37	-0.8
3,797,976	-		IAI47_17885	0.37	-0.5
3,797,976	-		IAI47_17885	0.37	+0.2
3,797,976	-		IAI47_17885	0.37	+0.3
3,797,988	+		IAI47_17885	0.38	-1.5
3,797,988	+		IAI47_17885	0.38	-0.0
3,797,988	+		IAI47_17885	0.38	-0.5
3,797,989	-		IAI47_17885	0.38	-1.2
3,797,989	-		IAI47_17885	0.38	+0.5
3,797,989	-		IAI47_17885	0.38	+0.8
3,797,989	-		IAI47_17885	0.38	-0.4
3,797,989	-		IAI47_17885	0.38	-0.8
3,797,989	-		IAI47_17885	0.38	-1.0
3,797,989	-		IAI47_17885	0.38	-0.7
3,797,991	+		IAI47_17885	0.38	+0.9
3,797,992	-		IAI47_17885	0.38	-0.8
3,798,086	+		IAI47_17885	0.46	+0.1
3,798,086	+		IAI47_17885	0.46	+0.2
3,798,147	-		IAI47_17885	0.50	-0.2
3,798,152	+		IAI47_17885	0.50	-0.9
3,798,152	+		IAI47_17885	0.50	+0.1
3,798,153	-		IAI47_17885	0.51	+0.3
3,798,153	-		IAI47_17885	0.51	-0.2
3,798,155	+		IAI47_17885	0.51	-0.4
3,798,155	+		IAI47_17885	0.51	-1.5
3,798,168	+		IAI47_17885	0.52	+0.8
3,798,168	+		IAI47_17885	0.52	+0.4
3,798,169	-		IAI47_17885	0.52	+0.2
3,798,169	-		IAI47_17885	0.52	-0.8
3,798,169	-		IAI47_17885	0.52	+0.0
3,798,169	-		IAI47_17885	0.52	+0.6
3,798,211	+		IAI47_17885	0.55	+0.8
3,798,211	+		IAI47_17885	0.55	+0.3
3,798,211	+		IAI47_17885	0.55	-0.2
3,798,211	+		IAI47_17885	0.55	+0.1
3,798,211	+		IAI47_17885	0.55	-0.3
3,798,212	-		IAI47_17885	0.55	-0.2
3,798,310	-		IAI47_17885	0.62	-0.3
3,798,310	-		IAI47_17885	0.62	+0.8
3,798,310	-		IAI47_17885	0.62	+0.1
3,798,310	-		IAI47_17885	0.62	-2.0
3,798,338	-		IAI47_17885	0.65	+0.1
3,798,413	+		IAI47_17885	0.70	-0.9
3,798,435	+		IAI47_17885	0.72	-2.0
3,798,435	+		IAI47_17885	0.72	+1.0
3,798,435	+		IAI47_17885	0.72	+0.1
3,798,436	-		IAI47_17885	0.72	+0.1
3,798,436	-		IAI47_17885	0.72	-0.1
3,798,436	-		IAI47_17885	0.72	-2.0
3,798,436	-		IAI47_17885	0.72	+1.5
3,798,453	+		IAI47_17885	0.73	+0.6
3,798,453	+		IAI47_17885	0.73	-0.2
3,798,454	-		IAI47_17885	0.73	-1.2
3,798,454	-		IAI47_17885	0.73	-1.2
3,798,564	-		IAI47_17885	0.82	-0.3
3,798,602	+		IAI47_17885	0.85	-1.6
3,798,603	-		IAI47_17885	0.85	+1.8
3,798,629	+		IAI47_17885	0.87	-0.3
3,798,630	-		IAI47_17885	0.87	+0.8
3,798,630	-		IAI47_17885	0.87	+0.0
3,798,630	-		IAI47_17885	0.87	-2.2
3,798,630	-		IAI47_17885	0.87	+0.3
3,798,676	+				+0.2
3,798,676	+				-1.8
3,798,677	-				-0.5
3,798,701	+				+0.2
3,798,701	+				-0.5
3,798,701	+				+0.7
3,798,702	-				+0.2
3,798,702	-				+1.1
3,798,702	-				-0.4
3,798,710	+				+1.4
3,798,740	+				+0.4
3,798,740	+				+0.4
3,798,741	-				-0.5
3,798,741	-				-0.2
3,798,741	-				-0.6
3,798,741	-				-1.3
3,798,741	-				+0.0
3,798,741	-				-2.4
3,798,797	+				+0.8
3,798,798	-				-1.2
3,798,798	-				+0.8
3,798,868	+				+1.9
3,798,868	+				+1.2
3,798,868	+				+0.5
3,798,868	+				-1.0
3,798,868	+				-1.6
3,798,868	+				+0.3
3,798,868	+				+0.0
3,798,869	-				+0.4
3,798,869	-				+0.5
3,798,869	-				-0.1
3,798,869	-				-0.0
3,798,869	-				-0.2
3,798,869	-				+0.3
3,799,540	-				+1.1
3,799,540	-				+2.4
3,799,555	-				-0.4
3,799,555	-				+0.7
3,799,556	+				-3.0
3,799,557	-				-0.6
3,799,557	-				-0.1
3,799,557	-				-0.2
3,799,557	-				+0.5
3,799,557	-				+1.8
3,799,557	-				-0.8
3,799,558	+				-0.4
3,799,558	+				+0.2
3,799,558	+				+0.2
3,799,559	-				+0.1
3,799,559	-				+0.0
3,799,559	-				-2.8
3,799,559	-				-0.0
3,799,615	+				-1.2
3,799,627	-				-0.3
3,799,627	-				-0.3
3,799,673	+		IAI47_17895	0.13	-1.5
3,799,673	+		IAI47_17895	0.13	-0.2
3,799,673	+		IAI47_17895	0.13	-0.7
3,799,673	+		IAI47_17895	0.13	+0.6
3,799,673	+		IAI47_17895	0.13	-0.9
3,799,673	+		IAI47_17895	0.13	-0.8
3,799,673	+		IAI47_17895	0.13	-0.5
3,799,674	-		IAI47_17895	0.13	+0.7
3,799,674	-		IAI47_17895	0.13	+1.2
3,799,674	-		IAI47_17895	0.13	-0.5
3,799,674	-		IAI47_17895	0.13	-0.3
3,799,674	-		IAI47_17895	0.13	-0.4
3,799,774	+		IAI47_17895	0.40	-0.9