Strain Fitness in Pantoea sp. MT58 around IAI47_17805

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
3,780,464	-				+0.8
3,780,464	-				-1.7
3,780,464	-				-0.3
3,780,464	-				-0.2
3,780,479	+				+0.6
3,780,479	+				-0.2
3,780,568	+		IAI47_17800	0.11	+0.6
3,780,632	+		IAI47_17800	0.18	+0.3
3,780,632	+		IAI47_17800	0.18	-0.5
3,780,633	-		IAI47_17800	0.18	-0.2
3,780,633	-		IAI47_17800	0.18	+1.2
3,780,674	+		IAI47_17800	0.23	-1.0
3,780,675	-		IAI47_17800	0.23	+0.8
3,780,675	-		IAI47_17800	0.23	-0.1
3,780,781	+		IAI47_17800	0.36	+0.9
3,780,782	-		IAI47_17800	0.36	+0.2
3,780,966	+		IAI47_17800	0.59	+0.7
3,780,966	+		IAI47_17800	0.59	-0.5
3,780,967	-		IAI47_17800	0.59	+0.6
3,781,019	+		IAI47_17800	0.65	-0.2
3,781,019	+		IAI47_17800	0.65	-0.1
3,781,019	+		IAI47_17800	0.65	-1.8
3,781,019	+		IAI47_17800	0.65	-0.4
3,781,019	+		IAI47_17800	0.65	+0.3
3,781,113	+		IAI47_17800	0.76	-0.0
3,781,113	+		IAI47_17800	0.76	+1.2
3,781,113	+		IAI47_17800	0.76	+0.6
3,781,114	-		IAI47_17800	0.76	-0.5
3,781,114	-		IAI47_17800	0.76	-0.4
3,781,114	-		IAI47_17800	0.76	+0.8
3,781,115	+		IAI47_17800	0.77	+0.8
3,781,115	+		IAI47_17800	0.77	+0.0
3,781,115	+		IAI47_17800	0.77	+1.8
3,781,115	+		IAI47_17800	0.77	-0.4
3,781,116	-		IAI47_17800	0.77	-0.8
3,781,116	-		IAI47_17800	0.77	-0.3
3,781,116	-		IAI47_17800	0.77	-0.2
3,781,116	-		IAI47_17800	0.77	+0.7
3,781,116	-		IAI47_17800	0.77	-1.3
3,781,159	-		IAI47_17800	0.82	-0.5
3,781,185	+		IAI47_17800	0.85	+0.2
3,781,202	+		IAI47_17800	0.87	+0.3
3,781,203	-		IAI47_17800	0.87	+0.8
3,781,224	-		IAI47_17800	0.90	-1.2
3,781,320	+				+0.1
3,781,320	+				+1.1
3,781,320	+				+0.6
3,781,325	-				+1.3
3,781,336	+				+0.1
3,781,376	+				+0.5
3,781,377	-				+1.4
3,781,377	-				-0.5
3,781,377	-				-1.0
3,781,395	-				-0.7
3,781,395	-				-0.9
3,781,395	-				+1.8
3,781,395	-				-0.2
3,781,395	-				-0.8
3,781,395	-				-1.7
3,781,395	-				-1.4
3,781,423	+				+0.6
3,781,423	+				+0.2
3,781,423	+				-0.5
3,781,423	+				-0.0
3,781,423	+				-0.8
3,781,423	+				+0.5
3,781,423	+				-0.8
3,781,423	+				-0.6
3,781,423	+				-0.1
3,781,424	-				+1.1
3,781,424	-				+0.4
3,781,424	-				-0.2
3,781,424	-				+1.8
3,781,424	-				+0.8
3,781,424	-				+1.4
3,781,424	-				-0.5
3,781,424	-				-0.8
3,781,424	-				-0.2
3,781,424	-				+0.7
3,781,424	-				-0.1
3,781,424	-				+0.4
3,781,444	+				+1.7
3,781,444	+				+0.5
3,781,445	-				+0.3
3,781,457	+				+1.4
3,781,471	+				-1.4
3,781,472	-				-2.4
3,781,472	-				-1.0
3,781,494	-		IAI47_17805	0.13	-0.4
3,781,553	+		IAI47_17805	0.24	+0.0
3,781,553	+		IAI47_17805	0.24	-0.6
3,781,553	+		IAI47_17805	0.24	+1.6
3,781,554	-		IAI47_17805	0.24	+0.5
3,781,554	-		IAI47_17805	0.24	+0.8
3,781,555	+		IAI47_17805	0.24	+0.2
3,781,555	+		IAI47_17805	0.24	+0.6
3,781,555	+		IAI47_17805	0.24	+0.5
3,781,555	+		IAI47_17805	0.24	-0.5
3,781,556	-		IAI47_17805	0.25	-0.5
3,781,556	-		IAI47_17805	0.25	-1.0
3,781,556	-		IAI47_17805	0.25	-0.1
3,781,556	-		IAI47_17805	0.25	-1.5
3,781,556	-		IAI47_17805	0.25	+0.0
3,781,556	-		IAI47_17805	0.25	+0.4
3,781,556	-		IAI47_17805	0.25	+0.2
3,781,638	+		IAI47_17805	0.40	-0.9
3,781,638	+		IAI47_17805	0.40	-0.4
3,781,639	-		IAI47_17805	0.40	+0.2
3,781,639	-		IAI47_17805	0.40	+0.8
3,781,639	-		IAI47_17805	0.40	+1.8
3,781,639	-		IAI47_17805	0.40	+0.5
3,781,639	-		IAI47_17805	0.40	+0.8
3,781,639	-		IAI47_17805	0.40	-1.0
3,781,693	+		IAI47_17805	0.51	-0.2
3,781,693	+		IAI47_17805	0.51	+1.7
3,781,694	-		IAI47_17805	0.51	+0.6
3,781,694	-		IAI47_17805	0.51	+0.3
3,781,743	+		IAI47_17805	0.60	+0.4
3,781,743	+		IAI47_17805	0.60	+0.8
3,781,743	+		IAI47_17805	0.60	-0.2
3,781,743	+		IAI47_17805	0.60	+0.8
3,781,743	+		IAI47_17805	0.60	+0.6
3,781,744	-		IAI47_17805	0.61	+0.9
3,781,744	-		IAI47_17805	0.61	+0.8
3,781,744	-		IAI47_17805	0.61	+0.9
3,781,744	-		IAI47_17805	0.61	-0.5
3,781,744	-		IAI47_17805	0.61	+0.2
3,781,744	-		IAI47_17805	0.61	-0.8
3,781,754	+		IAI47_17805	0.62	+0.4
3,781,755	-		IAI47_17805	0.63	+1.0
3,781,762	+		IAI47_17805	0.64	-0.1
3,781,763	-		IAI47_17805	0.64	-0.5
3,781,763	-		IAI47_17805	0.64	+0.6
3,781,785	+		IAI47_17805	0.68	+0.6
3,781,785	+		IAI47_17805	0.68	-0.2
3,781,786	-		IAI47_17805	0.69	+1.1
3,781,857	-		IAI47_17805	0.82	+0.6
3,781,947	+				+0.8
3,781,970	+				+0.6
3,781,985	+				-1.2
3,781,985	+				+1.8
3,781,985	+				+0.4
3,781,986	-				-0.6
3,782,681	+				-1.5
3,782,682	-				-0.4
3,782,682	-				-0.7
3,782,682	-				-0.1
3,782,717	-				-0.3
3,782,756	-				+1.6
3,782,756	-				+0.5
3,782,792	+				-1.4
3,782,814	+				-0.4
3,782,814	+				-0.8
3,782,814	+				+1.4
3,782,815	-				+0.3
3,782,815	-				-1.3
3,782,815	-				+0.2
3,782,844	+				+0.4
3,782,844	+				+0.0
3,782,916	+				-0.1
3,782,916	+				-0.0
3,782,916	+				+0.9
3,782,917	-				-1.3
3,782,937	+				-2.4
3,782,937	+				+0.8
3,782,937	+				-0.4
3,782,938	-				+0.2
3,782,938	-				-0.5
3,782,938	-				-1.5
3,782,944	+				+0.7
3,782,944	+				-1.5
3,782,944	+				-0.2
3,782,944	+				+0.6
3,782,945	-				-0.2
3,782,945	-				+0.0