Strain Fitness in Pantoea sp. MT58 around IAI47_16795

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
3,554,622	-				+1.8
3,554,673	-				-1.0
3,554,774	-				-0.2
3,554,774	-				-0.4
3,554,774	-				+0.8
3,554,774	-				-0.2
3,554,774	-				-0.8
3,554,814	-				-0.8
3,554,814	-				-0.3
3,554,814	-				-2.2
3,554,814	-				-2.8
3,554,814	-				-1.3
3,554,834	-				-1.9
3,554,834	-				-1.3
3,554,841	-				-0.6
3,554,865	+				-0.4
3,554,897	-				+0.8
3,555,006	+				-2.5
3,555,006	+				-0.8
3,555,007	-				-0.2
3,555,008	+				-0.2
3,555,098	+		IAI47_16795	0.14	-2.0
3,555,098	+		IAI47_16795	0.14	-1.2
3,555,147	+		IAI47_16795	0.17	+0.6
3,555,147	+		IAI47_16795	0.17	-0.9
3,555,173	+		IAI47_16795	0.19	-0.9
3,555,173	+		IAI47_16795	0.19	+0.4
3,555,173	+		IAI47_16795	0.19	+1.2
3,555,174	-		IAI47_16795	0.19	-0.2
3,555,176	+		IAI47_16795	0.19	-1.2
3,555,245	+		IAI47_16795	0.24	+0.1
3,555,245	+		IAI47_16795	0.24	-1.5
3,555,245	+		IAI47_16795	0.24	-2.6
3,555,245	+		IAI47_16795	0.24	-0.8
3,555,246	-		IAI47_16795	0.24	-0.8
3,555,281	+		IAI47_16795	0.26	-1.3
3,555,282	-		IAI47_16795	0.26	-0.6
3,555,294	+		IAI47_16795	0.27	+0.4
3,555,294	+		IAI47_16795	0.27	-0.0
3,555,294	+		IAI47_16795	0.27	+0.0
3,555,359	+		IAI47_16795	0.31	-0.5
3,555,471	-		IAI47_16795	0.39	-0.2
3,555,477	-		IAI47_16795	0.39	-0.5
3,555,487	-		IAI47_16795	0.40	-0.8
3,555,487	-		IAI47_16795	0.40	-2.1
3,555,527	+		IAI47_16795	0.43	-0.2
3,555,588	+		IAI47_16795	0.47	-0.5
3,555,588	+		IAI47_16795	0.47	-0.2
3,555,589	-		IAI47_16795	0.47	-0.8
3,555,642	+		IAI47_16795	0.50	-1.9
3,555,642	+		IAI47_16795	0.50	-1.5
3,555,642	+		IAI47_16795	0.50	+0.2
3,555,685	+		IAI47_16795	0.53	+0.8
3,555,756	+		IAI47_16795	0.58	+0.2
3,555,756	+		IAI47_16795	0.58	-1.8
3,555,756	+		IAI47_16795	0.58	-0.2
3,555,756	+		IAI47_16795	0.58	-1.8
3,555,756	+		IAI47_16795	0.58	+1.0
3,555,783	+		IAI47_16795	0.60	+0.2
3,555,783	+		IAI47_16795	0.60	-0.2
3,555,783	+		IAI47_16795	0.60	-2.0
3,555,783	+		IAI47_16795	0.60	-0.2
3,555,783	+		IAI47_16795	0.60	-0.8
3,555,784	-		IAI47_16795	0.60	+0.8
3,555,784	-		IAI47_16795	0.60	-1.8
3,555,784	-		IAI47_16795	0.60	-0.4
3,555,797	+		IAI47_16795	0.60	-1.5
3,555,798	-		IAI47_16795	0.61	+0.8
3,555,839	-		IAI47_16795	0.63	-1.5
3,555,975	+		IAI47_16795	0.72	-3.3
3,555,975	+		IAI47_16795	0.72	+1.8
3,555,975	+		IAI47_16795	0.72	-0.8
3,555,975	+		IAI47_16795	0.72	+0.8
3,555,976	-		IAI47_16795	0.72	-2.2
3,555,976	-		IAI47_16795	0.72	-1.2
3,555,976	-		IAI47_16795	0.72	-1.2
3,556,104	-		IAI47_16795	0.81	-1.5
3,556,226	+		IAI47_16795	0.89	+0.8
3,556,227	-		IAI47_16795	0.89	+0.2
3,556,263	+				-0.4
3,556,263	+				-1.3
3,556,263	+				-0.2
3,556,264	-				-0.2
3,556,265	+				-2.3
3,556,266	-				-0.4
3,556,266	-				-0.8
3,556,392	+				+0.1