Strain Fitness in Pantoea sp. MT58 around IAI47_16185

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
3,426,883	-				-0.2
3,426,883	-				+1.3
3,426,883	-				-0.8
3,426,883	-				+0.0
3,426,883	-				+1.2
3,426,883	-				-0.8
3,426,957	+				+1.1
3,426,957	+				+0.8
3,426,957	+				+0.6
3,426,957	+				+0.3
3,426,957	+				+1.0
3,426,957	+				-0.4
3,426,957	+				+1.5
3,426,958	-				+0.2
3,426,958	-				+0.7
3,426,958	-				+0.2
3,426,958	-				+0.6
3,427,009	-				-0.8
3,427,054	+				+0.8
3,427,054	+				+1.4
3,427,054	+				-1.2
3,427,054	+				-1.5
3,427,054	+				+0.8
3,427,054	+				+0.2
3,427,054	+				-0.4
3,427,054	+				-0.5
3,427,055	-				-0.2
3,427,055	-				-1.1
3,427,055	-				-0.0
3,427,055	-				-1.0
3,427,101	+				+0.3
3,427,101	+				-1.2
3,427,101	+				-0.6
3,427,101	+				-0.8
3,427,105	+				+0.1
3,427,105	+				+0.1
3,427,105	+				-0.1
3,427,105	+				-0.8
3,427,105	+				-1.2
3,427,105	+				-0.8
3,427,106	-				+1.7
3,427,106	-				+0.7
3,427,106	-				+0.7
3,427,134	+				-0.0
3,427,135	-				+0.4
3,427,135	-				-0.3
3,427,135	-				-0.8
3,427,156	-				+0.4
3,427,251	-		IAI47_16180	0.20	+0.2
3,427,308	+		IAI47_16180	0.30	+0.2
3,427,309	-		IAI47_16180	0.31	-0.8
3,427,309	-		IAI47_16180	0.31	-0.4
3,427,309	-		IAI47_16180	0.31	+0.3
3,427,309	-		IAI47_16180	0.31	-0.8
3,427,320	+		IAI47_16180	0.32	+2.0
3,427,320	+		IAI47_16180	0.32	+0.8
3,427,320	+		IAI47_16180	0.32	+0.4
3,427,320	+		IAI47_16180	0.32	-1.3
3,427,320	+		IAI47_16180	0.32	+0.2
3,427,320	+		IAI47_16180	0.32	-0.2
3,427,320	+		IAI47_16180	0.32	+2.1
3,427,321	-		IAI47_16180	0.33	-0.3
3,427,321	-		IAI47_16180	0.33	-0.2
3,427,321	-		IAI47_16180	0.33	-0.5
3,427,321	-		IAI47_16180	0.33	-0.9
3,427,321	-		IAI47_16180	0.33	+0.5
3,427,321	-		IAI47_16180	0.33	-1.1
3,427,321	-		IAI47_16180	0.33	+0.8
3,427,321	-		IAI47_16180	0.33	-0.8
3,427,342	-		IAI47_16180	0.36	+0.3
3,427,342	-		IAI47_16180	0.36	-0.5
3,427,342	-		IAI47_16180	0.36	-0.2
3,427,348	+		IAI47_16180	0.37	-0.8
3,427,348	+		IAI47_16180	0.37	+0.6
3,427,348	+		IAI47_16180	0.37	-0.4
3,427,348	+		IAI47_16180	0.37	-1.2
3,427,348	+		IAI47_16180	0.37	-0.6
3,427,348	+		IAI47_16180	0.37	+0.5
3,427,349	-		IAI47_16180	0.38	+0.0
3,427,349	-		IAI47_16180	0.38	+0.2
3,427,350	-		IAI47_16180	0.38	+0.2
3,427,487	+		IAI47_16180	0.62	+1.3
3,427,487	+		IAI47_16180	0.62	+0.2
3,427,488	-		IAI47_16180	0.62	-0.2
3,427,488	-		IAI47_16180	0.62	+0.8
3,427,494	+		IAI47_16180	0.63	+0.8
3,427,495	-		IAI47_16180	0.63	+1.6
3,427,527	+		IAI47_16180	0.69	+0.4
3,427,528	-		IAI47_16180	0.69	+2.0
3,427,630	+		IAI47_16180	0.87	+1.6
3,427,702	+				+0.5
3,427,703	-				+1.0
3,427,703	-				-0.6
3,427,703	-				-1.6
3,427,751	+				-0.9
3,427,751	+				+0.3
3,427,756	+				+0.7
3,427,756	+				+0.1
3,427,756	+				-0.9
3,427,757	-				-0.8
3,427,766	+				+0.7
3,427,766	+				-1.5
3,427,767	-				-0.8
3,427,767	-				+0.5
3,427,767	-				-1.2
3,427,855	+				+2.1
3,427,855	+				-0.8
3,427,855	+				-0.8
3,427,856	-				-0.8
3,427,856	-				-0.2
3,427,856	-				+0.2
3,427,856	-				+1.0
3,427,856	-				+0.5
3,427,856	-				+0.2
3,427,856	-				+0.8
3,427,856	-				+0.4
3,427,931	-		IAI47_16185	0.13	-0.6
3,427,942	+		IAI47_16185	0.14	-0.4
3,427,942	+		IAI47_16185	0.14	-0.2
3,427,942	+		IAI47_16185	0.14	+1.1
3,427,942	+		IAI47_16185	0.14	+0.2
3,427,942	+		IAI47_16185	0.14	+0.1
3,427,943	-		IAI47_16185	0.14	+0.7
3,427,943	-		IAI47_16185	0.14	+0.0
3,428,045	-		IAI47_16185	0.22	-0.5
3,428,069	-		IAI47_16185	0.24	-0.5
3,428,087	-		IAI47_16185	0.25	-0.2
3,428,087	-		IAI47_16185	0.25	+0.6
3,428,087	-		IAI47_16185	0.25	+2.0
3,428,099	+		IAI47_16185	0.26	+0.0
3,428,099	+		IAI47_16185	0.26	-0.4
3,428,099	+		IAI47_16185	0.26	-0.0
3,428,100	-		IAI47_16185	0.26	-0.4
3,428,100	-		IAI47_16185	0.26	-0.5
3,428,100	-		IAI47_16185	0.26	+0.5
3,428,135	+		IAI47_16185	0.29	-0.6
3,428,175	-		IAI47_16185	0.32	-1.1
3,428,196	+		IAI47_16185	0.34	+0.6
3,428,196	+		IAI47_16185	0.34	+0.4
3,428,197	-		IAI47_16185	0.34	-0.8
3,428,486	+		IAI47_16185	0.56	+0.8
3,428,487	-		IAI47_16185	0.56	+2.5
3,428,528	+		IAI47_16185	0.59	-2.0
3,428,528	+		IAI47_16185	0.59	+0.8
3,428,528	+		IAI47_16185	0.59	-0.5
3,428,529	-		IAI47_16185	0.59	-0.7
3,428,529	-		IAI47_16185	0.59	-1.5
3,428,529	-		IAI47_16185	0.59	+0.6
3,428,529	-		IAI47_16185	0.59	-0.4
3,428,560	-		IAI47_16185	0.62	-0.8
3,428,609	+		IAI47_16185	0.65	+0.1
3,428,609	+		IAI47_16185	0.65	-0.2
3,428,615	+		IAI47_16185	0.66	-0.1
3,428,615	+		IAI47_16185	0.66	+0.2
3,428,615	+		IAI47_16185	0.66	+0.4
3,428,615	+		IAI47_16185	0.66	+0.6
3,428,615	+		IAI47_16185	0.66	-0.3
3,428,616	-		IAI47_16185	0.66	-0.7
3,428,616	-		IAI47_16185	0.66	-0.2
3,428,616	-		IAI47_16185	0.66	+2.0
3,428,617	+		IAI47_16185	0.66	-0.8
3,428,617	+		IAI47_16185	0.66	+2.0
3,428,617	+		IAI47_16185	0.66	-0.4
3,428,618	-		IAI47_16185	0.66	+0.1
3,428,618	-		IAI47_16185	0.66	+0.6
3,428,618	-		IAI47_16185	0.66	+1.5
3,428,618	-		IAI47_16185	0.66	-0.4
3,428,618	-		IAI47_16185	0.66	+0.8
3,428,682	+		IAI47_16185	0.71	+0.4
3,428,682	+		IAI47_16185	0.71	+0.1
3,428,682	+		IAI47_16185	0.71	-0.4
3,428,682	+		IAI47_16185	0.71	-0.6
3,428,683	-		IAI47_16185	0.71	+0.5
3,428,757	+		IAI47_16185	0.77	-0.3
3,428,757	+		IAI47_16185	0.77	+0.1
3,428,757	+		IAI47_16185	0.77	-0.7
3,428,757	+		IAI47_16185	0.77	-0.3
3,428,757	+		IAI47_16185	0.77	-1.1
3,428,757	+		IAI47_16185	0.77	-0.8
3,428,758	-		IAI47_16185	0.77	+1.0
3,428,758	-		IAI47_16185	0.77	+1.8
3,428,758	-		IAI47_16185	0.77	-0.5
3,428,784	-		IAI47_16185	0.79	+0.7
3,428,784	-		IAI47_16185	0.79	+0.0
3,428,863	+		IAI47_16185	0.85	-0.5
3,428,915	+		IAI47_16185	0.89	-0.5
3,428,915	+		IAI47_16185	0.89	-1.9
3,428,915	+		IAI47_16185	0.89	+0.1
3,428,916	-		IAI47_16185	0.89	+0.1
3,428,977	+				-1.1
3,428,978	-				+1.0
3,429,022	+				+1.4
3,429,022	+				-2.6
3,429,022	+				+1.0
3,429,022	+				+1.0
3,429,023	-				-0.2
3,429,023	-				+0.3
3,429,062	+				-1.0
3,429,062	+				-0.3
3,429,063	-				-0.4
3,429,063	-				+0.6
3,429,063	-				+0.8
3,429,065	+				-1.1
3,429,065	+				+0.3
3,429,066	-				-0.0
3,429,098	+				+1.4
3,429,104	+				-1.1
3,429,105	-				-1.5
3,429,107	+				+0.1
3,429,108	-				+0.5
3,429,109	+				+0.8
3,429,110	-				-0.3
3,429,142	+				-0.3
3,429,147	+				+1.1
3,429,166	-				+0.2
3,429,170	-				-0.8
3,429,173	+				+1.0
3,429,173	+				+0.2
3,429,173	+				-0.3
3,429,173	+				-0.3
3,429,186	+				-0.8
3,429,187	-				-0.2
3,429,187	-				-0.7
3,429,187	-				-0.5
3,429,197	+				+0.1
3,429,198	-				+0.0
3,429,238	+		IAI47_16190	0.12	-0.5
3,429,238	+		IAI47_16190	0.12	+1.1
3,429,239	-		IAI47_16190	0.12	+0.0
3,429,239	-		IAI47_16190	0.12	+0.3
3,429,258	+		IAI47_16190	0.15	+0.9
3,429,259	-		IAI47_16190	0.15	+0.5
3,429,259	-		IAI47_16190	0.15	+0.6
3,429,297	+		IAI47_16190	0.22	-0.2
3,429,298	-		IAI47_16190	0.22	+1.0
3,429,390	+		IAI47_16190	0.38	+1.3
3,429,543	+		IAI47_16190	0.64	+0.8
3,429,543	+		IAI47_16190	0.64	-0.0
3,429,544	-		IAI47_16190	0.64	+0.1
3,429,546	+		IAI47_16190	0.64	-0.5
3,429,546	+		IAI47_16190	0.64	-0.8
3,429,546	+		IAI47_16190	0.64	+0.0
3,429,546	+		IAI47_16190	0.64	+0.1
3,429,547	-		IAI47_16190	0.64	+1.6
3,429,697	+				-1.4
3,429,697	+				+0.9
3,429,697	+				+0.7
3,429,697	+				-0.8
3,429,697	+				+0.4
3,429,697	+				+0.2
3,429,697	+				+1.0
3,429,697	+				+0.5
3,429,697	+				+1.2
3,429,697	+				+0.3
3,429,698	-				-1.0
3,429,698	-				-1.0
3,429,698	-				+0.5
3,429,728	-				-1.6
3,429,744	+				-1.2
3,429,744	+				-0.8
3,429,744	+				+0.1
3,429,744	+				-0.0
3,429,749	+				+0.8
3,429,749	+				+0.3
3,429,749	+				-0.2
3,429,749	+				+0.9
3,429,749	+				+1.0
3,429,749	+				+0.0
3,429,749	+				+1.4
3,429,749	+				+0.1
3,429,750	-				-1.1
3,429,750	-				-0.6
3,429,750	-				-0.1
3,429,750	-				-0.8
3,429,750	-				+0.4
3,429,750	-				-0.9
3,429,759	+				+0.6
3,429,759	+				-0.3
3,429,759	+				-0.1
3,429,759	+				-1.2
3,429,760	-				+1.4
3,429,760	-				+0.3
3,429,760	-				+0.5
3,429,760	-				-0.7
3,429,794	-				+1.2
3,429,794	-				-0.7
3,429,794	-				+2.3
3,429,816	+				+1.4
3,429,816	+				-0.0
3,429,816	+				+0.0
3,429,816	+				-2.5
3,429,817	-				-0.5
3,429,817	-				+0.4
3,429,817	-				-0.3
3,429,819	+				+0.8
3,429,819	+				+0.1
3,429,819	+				-1.1
3,429,819	+				-1.8
3,429,819	+				+0.0
3,429,819	+				-0.1
3,429,819	+				-0.3
3,429,819	+				-0.2
3,429,819	+				-0.8
3,429,819	+				+1.8
3,429,819	+				-0.4
3,429,820	-				-1.1
3,429,820	-				-1.5
3,429,820	-				+0.4
3,429,820	-				+0.4
3,429,820	-				+0.1
3,429,820	-				+1.4
3,429,820	-				-0.3
3,429,820	-				-0.8
3,429,821	+				+0.2
3,429,821	+				-0.5
3,429,821	+				-0.0
3,429,821	+				-0.8
3,429,821	+				+1.7
3,429,821	+				+1.0
3,429,822	-				+1.2
3,429,822	-				+0.0
3,429,822	-				+0.8
3,429,822	-				-0.4
3,429,822	-				-0.8
3,429,941	-				-0.6
3,429,967	+				+0.8
3,429,967	+				-0.2
3,429,967	+				+0.4
3,429,968	-				-1.1
3,430,041	+		IAI47_16195	0.17	-1.2
3,430,041	+		IAI47_16195	0.17	+1.8
3,430,041	+		IAI47_16195	0.17	-1.8
3,430,041	+		IAI47_16195	0.17	-2.4
3,430,042	-		IAI47_16195	0.17	+0.1
3,430,051	+		IAI47_16195	0.18	-0.4
3,430,051	+		IAI47_16195	0.18	-2.4