Strain Fitness in Pantoea sp. MT58 around IAI47_15980

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
3,373,333	-				-1.2
3,373,333	-				-0.5
3,373,333	-				+1.8
3,373,333	-				+0.8
3,373,333	-				-1.0
3,373,333	-				+0.6
3,373,333	-				+0.2
3,373,333	-				+0.2
3,373,333	-				+0.4
3,373,333	-				-0.8
3,373,333	-				+0.4
3,373,333	-				-0.8
3,373,333	-				+2.0
3,373,337	-				-1.8
3,373,337	-				-0.6
3,373,337	-				+0.3
3,373,337	-				+0.8
3,373,337	-				+0.1
3,373,337	-				+0.8
3,373,337	-				+0.8
3,373,337	-				+0.6
3,373,337	-				-0.1
3,373,337	-				+0.2
3,373,337	-				-0.4
3,373,337	-				+0.8
3,373,366	-				+0.6
3,373,366	-				-0.2
3,373,418	-		IAI47_15975	0.18	+0.1
3,373,449	-		IAI47_15975	0.25	+0.1
3,373,506	-		IAI47_15975	0.37	-1.0
3,373,506	-		IAI47_15975	0.37	+0.4
3,373,506	-		IAI47_15975	0.37	+0.1
3,373,506	-		IAI47_15975	0.37	+0.6
3,373,506	-		IAI47_15975	0.37	-1.4
3,373,599	-		IAI47_15975	0.58	-2.8
3,373,599	-		IAI47_15975	0.58	-0.3
3,373,652	-		IAI47_15975	0.69	+0.6
3,373,652	-		IAI47_15975	0.69	-0.2
3,373,652	-		IAI47_15975	0.69	-0.9
3,373,686	-		IAI47_15975	0.76	+0.3
3,373,686	-		IAI47_15975	0.76	+1.5
3,373,686	-		IAI47_15975	0.76	-1.1
3,373,686	-		IAI47_15975	0.76	+0.5
3,373,822	-				-0.9
3,373,859	+				+0.2
3,373,859	+				+2.6
3,373,859	+				-1.5
3,373,914	-				+1.1
3,373,914	-				+0.0
3,373,944	+				+0.5
3,373,944	+				+1.8
3,373,945	-				-0.2
3,373,947	-				-0.5
3,373,947	-				+0.8
3,373,954	+				+0.3
3,373,955	-				+0.4
3,373,986	+				+0.0
3,373,986	+				-0.6
3,373,987	-				-0.6
3,373,987	-				-2.0
3,373,995	-				+0.4
3,374,038	+				-0.0
3,374,038	+				+0.6
3,374,039	-				+0.5
3,374,039	-				-3.0
3,374,039	-				-0.6
3,374,050	+				-0.9
3,374,050	+				+0.1
3,374,050	+				-2.1
3,374,051	-				+1.1
3,374,051	-				+0.2
3,374,051	-				-2.0
3,374,051	-				+0.1
3,374,051	-				-0.4
3,374,085	+				-1.6
3,374,086	-				+0.7
3,374,151	+				+0.0
3,374,159	+				+1.8
3,374,159	+				-1.4
3,374,159	+				+0.4
3,374,159	+				+0.5
3,374,160	-				+0.8
3,374,160	-				-0.9
3,374,160	-				-1.2
3,374,160	-				+0.0
3,374,162	+				-1.8
3,374,162	+				-0.8
3,374,162	+				-0.0
3,374,163	-				+0.8
3,374,163	-				+0.6
3,374,163	-				-0.2
3,374,167	-				+0.5
3,374,234	+				-0.7
3,374,235	-				-0.9
3,374,254	-				-0.9
3,374,254	-				-2.9
3,374,265	+				+0.7
3,374,265	+				-0.3
3,374,265	+				-0.8
3,374,265	+				-1.0
3,374,265	+				+0.4
3,374,265	+				-0.9
3,374,265	+				+0.5
3,374,265	+				+0.2
3,374,265	+				-0.3
3,374,266	-				+0.4
3,374,266	-				+1.1
3,374,266	-				+1.6
3,374,267	+				-0.3
3,374,267	+				-1.8
3,374,267	+				+0.2
3,374,267	+				-0.3
3,374,267	+				-0.7
3,374,267	+				-0.5
3,374,267	+				+0.4
3,374,267	+				+0.1
3,374,268	-				-0.9
3,374,268	-				-0.9
3,374,268	-				-0.4
3,374,268	-				+0.8
3,374,268	-				+1.2
3,374,268	-				-0.2
3,374,268	-				+0.6
3,374,268	-				+0.4
3,374,268	-				+0.6
3,374,268	-				+0.0
3,374,270	+				+0.2
3,374,271	-				+1.4
3,374,289	-				+0.6
3,374,301	+				+0.1
3,374,301	+				-0.4
3,374,301	+				-0.8
3,374,317	+				-2.0
3,374,318	-				-0.2
3,374,318	-				-0.9
3,374,318	-				-1.0
3,374,320	-				-0.7
3,374,324	+				-0.8
3,374,325	-				-1.1
3,374,340	+				-1.2
3,374,340	+				-1.6
3,374,379	+				-2.6
3,374,379	+				-1.0
3,374,380	-				-2.5
3,374,386	-		IAI47_15980	0.10	-1.4
3,374,460	+		IAI47_15980	0.18	-2.1
3,374,460	+		IAI47_15980	0.18	-1.9
3,374,599	+		IAI47_15980	0.31	-0.2
3,374,600	-		IAI47_15980	0.31	-0.9
3,374,647	+		IAI47_15980	0.36	-1.0
3,374,647	+		IAI47_15980	0.36	-1.1
3,374,648	-		IAI47_15980	0.36	-2.3
3,374,648	-		IAI47_15980	0.36	-0.5
3,374,651	+		IAI47_15980	0.36	-2.5
3,374,651	+		IAI47_15980	0.36	-3.0
3,374,651	+		IAI47_15980	0.36	-2.4
3,374,651	+		IAI47_15980	0.36	-1.4
3,374,652	-		IAI47_15980	0.36	-2.2
3,374,652	-		IAI47_15980	0.36	-0.2
3,374,652	-		IAI47_15980	0.36	-1.6
3,374,653	+		IAI47_15980	0.37	-1.9
3,374,653	+		IAI47_15980	0.37	-2.4
3,374,653	+		IAI47_15980	0.37	-1.3
3,374,653	+		IAI47_15980	0.37	+0.5
3,374,653	-		IAI47_15980	0.37	-1.3
3,374,654	-		IAI47_15980	0.37	-2.9
3,374,654	-		IAI47_15980	0.37	-1.2
3,374,654	-		IAI47_15980	0.37	-2.8
3,374,654	-		IAI47_15980	0.37	-1.5
3,374,654	-		IAI47_15980	0.37	-1.2
3,374,654	-		IAI47_15980	0.37	-2.0
3,374,654	-		IAI47_15980	0.37	+0.1
3,374,826	-		IAI47_15980	0.54	-0.2
3,374,862	+		IAI47_15980	0.57	-1.3
3,374,863	-		IAI47_15980	0.57	-1.5
3,374,893	+		IAI47_15980	0.60	-2.2
3,374,913	+		IAI47_15980	0.62	-0.6
3,374,931	-		IAI47_15980	0.64	-2.0
3,374,931	-		IAI47_15980	0.64	-2.9
3,375,049	+		IAI47_15980	0.76	-1.8
3,375,049	+		IAI47_15980	0.76	-1.3
3,375,050	-		IAI47_15980	0.76	-0.8
3,375,050	-		IAI47_15980	0.76	-1.5
3,375,050	-		IAI47_15980	0.76	-2.5
3,375,050	-		IAI47_15980	0.76	-4.1
3,375,050	-		IAI47_15980	0.76	-2.5
3,375,059	+		IAI47_15980	0.77	-2.0
3,375,065	+		IAI47_15980	0.77	-0.8
3,375,065	+		IAI47_15980	0.77	-0.5
3,375,065	+		IAI47_15980	0.77	-0.8
3,375,065	+		IAI47_15980	0.77	-1.8
3,375,066	-		IAI47_15980	0.77	-0.5
3,375,066	-		IAI47_15980	0.77	-0.4
3,375,067	+		IAI47_15980	0.78	-1.9
3,375,067	+		IAI47_15980	0.78	-1.8
3,375,067	+		IAI47_15980	0.78	+0.1
3,375,067	+		IAI47_15980	0.78	-1.2
3,375,068	-		IAI47_15980	0.78	-0.8
3,375,096	+		IAI47_15980	0.80	-1.8
3,375,146	+		IAI47_15980	0.85	-2.4
3,375,147	-		IAI47_15980	0.85	-0.6
3,375,154	+		IAI47_15980	0.86	-2.0
3,375,154	+		IAI47_15980	0.86	-0.8
3,375,154	+		IAI47_15980	0.86	-1.8
3,375,154	+		IAI47_15980	0.86	-3.2
3,375,154	+		IAI47_15980	0.86	-2.5
3,375,154	+		IAI47_15980	0.86	-1.8
3,375,154	+		IAI47_15980	0.86	-1.2
3,375,154	+		IAI47_15980	0.86	+0.2
3,375,155	-		IAI47_15980	0.86	-1.8
3,375,155	-		IAI47_15980	0.86	-2.4
3,375,155	-		IAI47_15980	0.86	-1.0
3,375,155	-		IAI47_15980	0.86	+0.4
3,375,155	-		IAI47_15980	0.86	-3.4
3,375,155	-		IAI47_15980	0.86	-1.8
3,375,158	+		IAI47_15980	0.87	-2.3
3,375,158	+		IAI47_15980	0.87	-2.9
3,375,158	+		IAI47_15980	0.87	-1.2
3,375,158	+		IAI47_15980	0.87	-1.8
3,375,159	-		IAI47_15980	0.87	-0.5
3,375,159	-		IAI47_15980	0.87	-1.2
3,375,159	-		IAI47_15980	0.87	-0.2
3,375,159	-		IAI47_15980	0.87	-2.4
3,375,159	-		IAI47_15980	0.87	-2.0
3,375,159	-		IAI47_15980	0.87	-3.4
3,375,159	-		IAI47_15980	0.87	-2.4
3,375,159	-		IAI47_15980	0.87	-2.8
3,375,159	-		IAI47_15980	0.87	+0.2
3,375,168	+		IAI47_15980	0.88	-0.8
3,375,169	-		IAI47_15980	0.88	-3.2
3,375,212	-				-0.8
3,375,331	+				-2.2
3,375,341	+				-1.4
3,375,341	+				-0.2
3,375,342	-				-0.1
3,375,342	-				-0.2
3,375,342	-				+0.1
3,375,342	-				-0.5
3,375,342	-				-0.2
3,375,346	+				-0.2
3,375,346	+				-1.2
3,375,346	+				-1.4
3,375,347	-				+0.8
3,375,347	-				-0.9
3,375,347	-				+1.1
3,375,347	-				+0.9
3,375,353	-				+0.2
3,375,353	-				-0.8
3,375,353	-				-0.5
3,375,353	-				-0.5
3,375,363	+				-2.7
3,375,363	+				-3.4
3,375,364	-				+0.6
3,375,364	-				+0.4
3,375,364	-				+1.3
3,375,364	-				+0.2
3,375,364	-				+0.4
3,375,364	-				-0.8
3,375,364	-				-1.0
3,375,370	+				-1.5
3,375,370	+				-0.4
3,375,370	+				-0.5
3,375,370	+				+0.4
3,375,370	+				+1.2
3,375,371	-				+1.2
3,375,411	+				+1.2
3,375,411	+				-0.4
3,375,411	+				+0.3
3,375,412	-				+1.3
3,375,412	-				+0.3
3,375,460	+				+2.8
3,375,491	+				-0.6
3,375,624	-		IAI47_15985	0.27	+1.7
3,375,637	+		IAI47_15985	0.30	+0.1
3,375,637	+		IAI47_15985	0.30	-0.7
3,375,638	-		IAI47_15985	0.30	-0.2
3,375,638	-		IAI47_15985	0.30	-0.8
3,375,638	-		IAI47_15985	0.30	-0.8
3,375,695	+		IAI47_15985	0.42	+1.1
3,375,695	+		IAI47_15985	0.42	-0.7
3,375,696	-		IAI47_15985	0.42	+0.7
3,375,740	+		IAI47_15985	0.51	+2.8
3,375,740	+		IAI47_15985	0.51	+0.1
3,375,740	+		IAI47_15985	0.51	-1.0
3,375,741	-		IAI47_15985	0.51	+0.2
3,375,741	-		IAI47_15985	0.51	-0.1
3,375,814	+		IAI47_15985	0.66	+0.2
3,375,814	+		IAI47_15985	0.66	+0.8
3,375,815	-		IAI47_15985	0.66	-0.2
3,375,815	-		IAI47_15985	0.66	-0.7
3,375,897	+		IAI47_15985	0.83	+0.7
3,375,897	+		IAI47_15985	0.83	-0.3
3,375,898	-		IAI47_15985	0.83	+1.8
3,375,898	-		IAI47_15985	0.83	-0.4
3,375,898	-		IAI47_15985	0.83	+0.4
3,375,898	-		IAI47_15985	0.83	-0.1
3,375,898	-		IAI47_15985	0.83	+2.4
3,375,899	+		IAI47_15985	0.83	-0.5
3,375,899	+		IAI47_15985	0.83	+0.3
3,375,900	-		IAI47_15985	0.83	-0.8
3,375,935	-				-0.6
3,375,967	+				+0.5
3,375,968	-				-0.4
3,375,972	+				-0.0
3,375,972	+				+0.0
3,375,973	-				+0.3
3,375,981	+				-1.1
3,375,981	+				-1.6
3,375,981	+				-0.8
3,375,981	+				+0.6
3,375,981	+				+0.1
3,375,981	+				-0.4
3,375,981	+				+1.7
3,375,981	+				-0.2
3,375,981	+				-0.1
3,375,981	+				-0.6
3,375,981	+				+0.1
3,375,982	-				+0.8
3,375,982	-				+0.6
3,375,982	-				+1.8
3,375,982	-				-1.1
3,375,982	-				+0.5
3,375,982	-				-0.7
3,375,982	-				+0.8
3,375,985	+				-0.4
3,375,985	+				-1.4
3,375,985	+				-0.2
3,375,985	+				+2.9
3,375,985	+				+0.3
3,375,985	+				-0.4
3,375,985	+				+0.4
3,375,986	-				-0.5
3,375,986	-				+0.8
3,375,986	-				+1.4
3,375,986	-				-0.2
3,375,986	-				-0.4
3,375,986	-				-0.0
3,375,986	-				-2.2
3,375,986	-				+0.0
3,375,986	-				+1.1
3,376,048	+				-0.2
3,376,048	+				+0.8
3,376,048	+				-0.5
3,376,177	+		IAI47_15990	0.11	+1.4
3,376,177	+		IAI47_15990	0.11	+0.8
3,376,178	-		IAI47_15990	0.11	-0.8
3,376,178	-		IAI47_15990	0.11	+0.7
3,376,178	-		IAI47_15990	0.11	-0.2
3,376,178	-		IAI47_15990	0.11	-1.6
3,376,178	-		IAI47_15990	0.11	+0.4
3,376,217	+		IAI47_15990	0.14	+1.3
3,376,217	+		IAI47_15990	0.14	-2.2
3,376,217	+		IAI47_15990	0.14	+0.0
3,376,217	+		IAI47_15990	0.14	+0.0
3,376,218	-		IAI47_15990	0.14	-0.0
3,376,218	-		IAI47_15990	0.14	-0.0
3,376,218	-		IAI47_15990	0.14	+0.0
3,376,218	-		IAI47_15990	0.14	-1.1
3,376,218	-		IAI47_15990	0.14	-0.2
3,376,219	+		IAI47_15990	0.14	-0.9
3,376,219	+		IAI47_15990	0.14	-0.1
3,376,219	+		IAI47_15990	0.14	+3.1
3,376,219	+		IAI47_15990	0.14	-0.1
3,376,219	+		IAI47_15990	0.14	-0.2
3,376,219	+		IAI47_15990	0.14	-0.0
3,376,219	+		IAI47_15990	0.14	-0.3
3,376,219	+		IAI47_15990	0.14	-2.0
3,376,219	+		IAI47_15990	0.14	+1.1
3,376,219	+		IAI47_15990	0.14	+1.6
3,376,220	-		IAI47_15990	0.14	+0.4
3,376,220	-		IAI47_15990	0.14	+0.0
3,376,220	-		IAI47_15990	0.14	-2.0
3,376,220	-		IAI47_15990	0.14	-1.7
3,376,220	-		IAI47_15990	0.14	+0.5
3,376,220	-		IAI47_15990	0.14	+0.2
3,376,220	-		IAI47_15990	0.14	-0.2
3,376,220	-		IAI47_15990	0.14	-1.4
3,376,250	+		IAI47_15990	0.15	-2.0
3,376,250	+		IAI47_15990	0.15	-0.0
3,376,251	-		IAI47_15990	0.15	-0.4
3,376,251	-		IAI47_15990	0.15	-0.6
3,376,251	-		IAI47_15990	0.15	+0.8
3,376,286	+		IAI47_15990	0.18	-0.8