Strain Fitness in Pantoea sp. MT58 around IAI47_15635

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
3,297,408	+				+0.8
3,297,408	+				-0.5
3,297,409	-				-1.2
3,297,434	-				-1.0
3,297,456	+				+2.4
3,297,456	+				-1.2
3,297,456	+				-1.8
3,297,456	+				-1.8
3,297,456	+				+1.1
3,297,456	+				-0.7
3,297,457	-				-0.7
3,297,457	-				-0.1
3,297,457	-				-0.6
3,297,457	-				+0.2
3,297,522	+		IAI47_15630	0.19	-1.8
3,297,523	-		IAI47_15630	0.19	+0.1
3,297,545	-		IAI47_15630	0.22	+1.8
3,297,575	-		IAI47_15630	0.27	+1.3
3,297,630	+		IAI47_15630	0.34	-0.2
3,297,631	-		IAI47_15630	0.34	+0.6
3,297,631	-		IAI47_15630	0.34	+1.1
3,297,720	-		IAI47_15630	0.47	-0.1
3,297,720	-		IAI47_15630	0.47	+0.8
3,297,784	+		IAI47_15630	0.56	+0.1
3,297,784	+		IAI47_15630	0.56	+1.3
3,297,784	+		IAI47_15630	0.56	-0.2
3,297,785	-		IAI47_15630	0.56	+0.8
3,297,785	-		IAI47_15630	0.56	-0.2
3,297,785	-		IAI47_15630	0.56	+0.3
3,297,786	+		IAI47_15630	0.56	-1.3
3,297,786	+		IAI47_15630	0.56	+0.6
3,297,786	+		IAI47_15630	0.56	-0.0
3,297,786	+		IAI47_15630	0.56	-0.2
3,297,786	+		IAI47_15630	0.56	-1.5
3,297,786	+		IAI47_15630	0.56	+0.4
3,297,787	-		IAI47_15630	0.57	-0.4
3,297,829	+		IAI47_15630	0.63	+0.2
3,297,829	+		IAI47_15630	0.63	-0.0
3,297,979	+		IAI47_15630	0.84	+0.1
3,297,979	+		IAI47_15630	0.84	-0.4
3,297,980	-		IAI47_15630	0.84	-0.0
3,297,980	-		IAI47_15630	0.84	+1.2
3,297,980	-		IAI47_15630	0.84	+1.0
3,297,980	-		IAI47_15630	0.84	+0.2
3,297,980	-		IAI47_15630	0.84	-0.6
3,297,980	-		IAI47_15630	0.84	+0.7
3,297,980	-		IAI47_15630	0.84	+0.5
3,298,016	+		IAI47_15630	0.89	+1.0
3,298,025	+				-0.6
3,298,030	+				+0.5
3,298,030	+				+0.5
3,298,030	+				+0.8
3,298,031	-				+0.5
3,298,031	-				-0.4
3,298,031	-				-2.2
3,298,043	+				-1.5
3,298,065	+				-0.2
3,298,066	-				-0.1
3,298,082	+				-0.2
3,298,082	+				-1.1
3,298,082	+				+0.2
3,298,083	-				+0.8
3,298,083	-				-1.4
3,298,091	-				+0.5
3,298,091	-				-0.3
3,298,093	+				-0.1
3,298,093	+				+0.8
3,298,115	+				-1.2
3,298,116	-				-0.7
3,298,131	+				+0.8
3,298,132	-				+0.8
3,298,142	+				+0.8
3,298,142	+				+1.0
3,298,142	+				-0.6
3,298,143	-				+0.0
3,298,143	-				-0.1
3,298,208	+				+0.5
3,298,208	+				+0.8
3,298,212	+				+0.8
3,298,212	+				+0.3
3,298,250	+				+1.0
3,298,264	+				+1.1
3,298,311	+				+2.1
3,298,311	+				+1.7
3,298,311	+				+0.1
3,298,311	+				+0.4
3,298,311	+				-1.4
3,298,311	+				+0.6
3,298,313	+				+0.2
3,298,313	+				+2.3
3,298,313	+				-0.8
3,298,313	+				+1.3
3,298,313	+				+1.1
3,298,324	-				-0.8
3,298,432	+		IAI47_15635	0.20	-1.7
3,298,483	+		IAI47_15635	0.31	-1.2
3,298,511	-		IAI47_15635	0.38	-1.5
3,298,540	+		IAI47_15635	0.44	-0.8
3,298,618	+		IAI47_15635	0.61	-1.2
3,298,813	+				+0.7
3,298,813	+				-1.4
3,298,868	+				-0.4
3,298,868	+				+0.4
3,298,868	+				+1.8
3,298,868	+				-0.5
3,298,869	-				-1.1
3,298,869	-				+0.3
3,298,869	-				+0.1
3,298,869	-				+0.6
3,298,869	-				+0.9
3,298,869	-				+1.3
3,298,884	-				+0.5
3,298,884	-				-1.2
3,298,934	+				-0.6
3,298,934	+				+0.1
3,298,934	+				-0.8
3,298,953	+				-0.7
3,298,953	+				+0.8
3,298,953	+				+0.1
3,298,954	-				+0.8
3,298,991	-		IAI47_15640	0.14	-0.7
3,298,991	-		IAI47_15640	0.14	+0.4
3,299,003	+		IAI47_15640	0.15	-0.2
3,299,003	+		IAI47_15640	0.15	+0.2
3,299,003	+		IAI47_15640	0.15	+0.8
3,299,004	-		IAI47_15640	0.15	+0.5
3,299,004	-		IAI47_15640	0.15	+0.4
3,299,023	+		IAI47_15640	0.18	-1.4
3,299,024	-		IAI47_15640	0.18	+0.0
3,299,024	-		IAI47_15640	0.18	+0.7
3,299,042	+		IAI47_15640	0.20	-1.2
3,299,043	-		IAI47_15640	0.20	+0.1
3,299,043	-		IAI47_15640	0.20	-0.1
3,299,064	+		IAI47_15640	0.22	+1.8
3,299,064	+		IAI47_15640	0.22	-0.8
3,299,065	-		IAI47_15640	0.22	-0.3
3,299,065	-		IAI47_15640	0.22	-0.4
3,299,071	+		IAI47_15640	0.23	+0.5
3,299,160	+		IAI47_15640	0.33	+0.8
3,299,160	+		IAI47_15640	0.33	+0.7
3,299,161	-		IAI47_15640	0.33	-1.0
3,299,161	-		IAI47_15640	0.33	-0.5
3,299,161	-		IAI47_15640	0.33	+0.3
3,299,208	+		IAI47_15640	0.39	+0.8
3,299,208	+		IAI47_15640	0.39	-1.0
3,299,208	+		IAI47_15640	0.39	+0.8
3,299,208	+		IAI47_15640	0.39	-0.4
3,299,208	+		IAI47_15640	0.39	-0.2
3,299,208	+		IAI47_15640	0.39	+0.2
3,299,208	+		IAI47_15640	0.39	-0.5
3,299,209	-		IAI47_15640	0.39	+0.5
3,299,209	-		IAI47_15640	0.39	+0.4
3,299,209	-		IAI47_15640	0.39	+0.2
3,299,209	-		IAI47_15640	0.39	-1.1
3,299,209	-		IAI47_15640	0.39	-0.7
3,299,209	-		IAI47_15640	0.39	-0.9
3,299,209	-		IAI47_15640	0.39	+0.5
3,299,217	+		IAI47_15640	0.40	+1.1
3,299,218	-		IAI47_15640	0.40	+0.2
3,299,218	-		IAI47_15640	0.40	+2.8
3,299,257	+		IAI47_15640	0.44	+1.2
3,299,258	-		IAI47_15640	0.44	-1.2
3,299,348	+		IAI47_15640	0.54	-1.1
3,299,349	-		IAI47_15640	0.55	-0.1
3,299,349	-		IAI47_15640	0.55	-1.9
3,299,379	+		IAI47_15640	0.58	+1.8
3,299,379	+		IAI47_15640	0.58	-0.5
3,299,379	+		IAI47_15640	0.58	+0.3
3,299,379	+		IAI47_15640	0.58	-0.2
3,299,380	-		IAI47_15640	0.58	+0.6
3,299,381	+		IAI47_15640	0.58	-0.5
3,299,382	-		IAI47_15640	0.58	+0.6
3,299,382	-		IAI47_15640	0.58	+0.1
3,299,447	+		IAI47_15640	0.66	+0.2
3,299,447	+		IAI47_15640	0.66	-1.4
3,299,447	+		IAI47_15640	0.66	+0.1
3,299,448	-		IAI47_15640	0.66	+0.9
3,299,462	-		IAI47_15640	0.67	+1.5
3,299,479	-		IAI47_15640	0.69	-0.4
3,299,512	+		IAI47_15640	0.73	-0.3
3,299,512	+		IAI47_15640	0.73	-1.4
3,299,512	+		IAI47_15640	0.73	-0.7
3,299,512	+		IAI47_15640	0.73	+1.4
3,299,512	+		IAI47_15640	0.73	+0.8
3,299,512	+		IAI47_15640	0.73	-0.2
3,299,531	+		IAI47_15640	0.75	-0.8
3,299,531	+		IAI47_15640	0.75	-0.3
3,299,546	+		IAI47_15640	0.77	+0.1
3,299,546	+		IAI47_15640	0.77	+0.4
3,299,547	-		IAI47_15640	0.77	-0.8
3,299,547	-		IAI47_15640	0.77	-0.5
3,299,547	-		IAI47_15640	0.77	-0.8
3,299,547	-		IAI47_15640	0.77	-1.2
3,299,551	+		IAI47_15640	0.78	+0.8
3,299,551	+		IAI47_15640	0.78	+0.5
3,299,551	+		IAI47_15640	0.78	+0.6
3,299,551	+		IAI47_15640	0.78	-1.2
3,299,551	+		IAI47_15640	0.78	+1.4
3,299,552	-		IAI47_15640	0.78	-3.4
3,299,659	+		IAI47_15640	0.90	+0.1
3,299,659	+		IAI47_15640	0.90	+1.0
3,299,659	+		IAI47_15640	0.90	-0.6
3,299,659	+		IAI47_15640	0.90	+0.4
3,299,660	-				+1.2
3,299,660	-				+0.4
3,299,703	-				+0.9
3,299,745	+				-0.1
3,299,745	+				+0.1
3,299,746	-				-0.3
3,299,746	-				-0.2
3,299,746	-				-0.5
3,299,746	-				-1.0
3,299,746	-				-0.3
3,299,780	+				-1.2
3,299,780	+				-0.1
3,299,780	+				+0.8
3,299,780	+				-0.2
3,299,781	-				-2.2
3,299,781	-				+1.6
3,299,781	-				+1.0
3,299,781	-				-0.9
3,299,781	-				+0.8
3,299,787	-				+1.8