Strain Fitness in Pantoea sp. MT58 around IAI47_15250

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
3,214,300	+		IAI47_15245	0.20	-0.2
3,214,301	-		IAI47_15245	0.20	+0.1
3,214,314	+		IAI47_15245	0.21	-0.5
3,214,317	+		IAI47_15245	0.22	+0.4
3,214,318	-		IAI47_15245	0.22	-0.7
3,214,318	-		IAI47_15245	0.22	+0.2
3,214,318	-		IAI47_15245	0.22	-0.1
3,214,374	-		IAI47_15245	0.26	-0.9
3,214,439	+		IAI47_15245	0.31	-1.5
3,214,439	+		IAI47_15245	0.31	+0.1
3,214,439	+		IAI47_15245	0.31	-1.4
3,214,440	-		IAI47_15245	0.31	+0.2
3,214,440	-		IAI47_15245	0.31	+0.2
3,214,480	+		IAI47_15245	0.35	+1.5
3,214,480	+		IAI47_15245	0.35	+0.8
3,214,480	+		IAI47_15245	0.35	+2.6
3,214,481	-		IAI47_15245	0.35	+0.2
3,214,481	-		IAI47_15245	0.35	+0.8
3,214,651	+		IAI47_15245	0.48	+0.5
3,214,725	+		IAI47_15245	0.54	+0.3
3,214,735	+		IAI47_15245	0.55	-0.2
3,214,810	+		IAI47_15245	0.61	-0.8
3,214,810	+		IAI47_15245	0.61	-0.9
3,214,810	+		IAI47_15245	0.61	-0.8
3,214,811	-		IAI47_15245	0.61	-0.6
3,214,811	-		IAI47_15245	0.61	-0.1
3,214,811	-		IAI47_15245	0.61	+2.4
3,214,811	-		IAI47_15245	0.61	-0.3
3,214,886	-		IAI47_15245	0.67	-0.5
3,214,886	-		IAI47_15245	0.67	-1.2
3,214,973	+		IAI47_15245	0.74	+0.5
3,214,973	+		IAI47_15245	0.74	+1.8
3,214,973	+		IAI47_15245	0.74	+1.3
3,214,973	+		IAI47_15245	0.74	-0.2
3,214,973	+		IAI47_15245	0.74	+1.5
3,215,088	+		IAI47_15245	0.83	+0.4
3,215,088	+		IAI47_15245	0.83	+1.1
3,215,101	+		IAI47_15245	0.84	+0.9
3,215,101	+		IAI47_15245	0.84	+0.5
3,215,101	+		IAI47_15245	0.84	-1.5
3,215,102	-		IAI47_15245	0.84	+0.3
3,215,102	-		IAI47_15245	0.84	+0.2
3,215,102	-		IAI47_15245	0.84	+0.3
3,215,193	+				+0.0
3,215,193	+				-0.5
3,215,193	+				+1.6
3,215,193	+				-0.3
3,215,313	-				-0.5
3,215,426	+		IAI47_15250	0.11	+2.1
3,215,427	-		IAI47_15250	0.11	-0.2
3,215,743	-		IAI47_15250	0.36	-0.8
3,215,743	-		IAI47_15250	0.36	-0.8
3,215,762	+		IAI47_15250	0.38	-0.2
3,215,762	+		IAI47_15250	0.38	+0.1
3,215,762	+		IAI47_15250	0.38	+0.7
3,215,790	-		IAI47_15250	0.40	-0.7
3,215,790	-		IAI47_15250	0.40	-1.8
3,215,790	-		IAI47_15250	0.40	+1.6
3,215,799	-		IAI47_15250	0.41	-1.1
3,215,799	-		IAI47_15250	0.41	-1.1
3,215,799	-		IAI47_15250	0.41	+0.7
3,216,017	+		IAI47_15250	0.58	-0.7
3,216,017	+		IAI47_15250	0.58	+0.7
3,216,017	+		IAI47_15250	0.58	-1.4
3,216,018	-		IAI47_15250	0.58	-1.1
3,216,032	+		IAI47_15250	0.60	+1.2
3,216,032	+		IAI47_15250	0.60	-0.2
3,216,033	-		IAI47_15250	0.60	+0.3
3,216,039	+		IAI47_15250	0.60	-0.8
3,216,040	-		IAI47_15250	0.60	+0.1
3,216,087	+		IAI47_15250	0.64	-0.5
3,216,157	-		IAI47_15250	0.70	+1.1
3,216,293	-		IAI47_15250	0.81	+0.8
3,216,293	-		IAI47_15250	0.81	-0.8
3,216,293	-		IAI47_15250	0.81	-0.6
3,216,369	-		IAI47_15250	0.87	-0.9
3,216,369	-		IAI47_15250	0.87	+2.2
3,216,392	+		IAI47_15250	0.89	-1.1
3,216,392	+		IAI47_15250	0.89	-0.1
3,216,392	+		IAI47_15250	0.89	-0.2
3,216,393	-		IAI47_15250	0.89	-1.0
3,216,393	-		IAI47_15250	0.89	+0.6
3,216,393	-		IAI47_15250	0.89	-1.0
3,216,413	+				+1.9
3,216,413	+				+1.4
3,216,413	+				-1.0
3,216,414	-				-0.2
3,216,414	-				+0.8
3,216,523	+				-0.9
3,216,523	+				+0.2
3,216,523	+				-0.0
3,216,523	+				+0.7
3,216,523	+				+1.0
3,216,523	+				+0.1
3,216,524	-				-0.2
3,216,524	-				-0.8
3,216,524	-				+0.8
3,216,524	-				-0.8
3,216,524	-				-0.2
3,216,524	-				-0.2
3,216,525	+				+0.8
3,216,525	+				+0.1
3,216,525	+				+0.9
3,216,525	+				-1.1
3,216,525	+				+0.3
3,216,525	+				+1.4
3,216,525	+				+0.2
3,216,525	+				+0.4
3,216,526	-				+0.8
3,216,526	-				-0.4
3,216,526	-				-0.2
3,216,526	-				+0.6
3,216,526	-				-0.0
3,216,526	-				+0.6
3,216,526	-				-0.3
3,216,526	-				+1.3
3,216,562	+				+0.1
3,216,563	-				+0.8
3,216,563	-				-0.2
3,216,567	+				-0.0
3,216,567	+				+2.0
3,216,567	+				-1.0
3,216,568	-				-0.6
3,216,568	-				+0.4
3,216,611	-				-0.2
3,216,672	+				+0.8
3,216,673	-				+0.8
3,216,673	-				-0.6
3,216,681	+				+0.4
3,216,681	+				-1.4
3,216,682	-				-0.3
3,216,730	-				-1.0
3,216,746	-				-0.1
3,216,753	+				+0.1
3,216,753	+				+1.4
3,216,753	+				+1.7
3,216,772	+				-0.2
3,216,773	-				+0.6
3,216,773	-				+1.2
3,216,817	+				+1.8
3,216,817	+				-0.1
3,216,818	-				+2.4
3,216,853	+		IAI47_15255	0.14	+0.5
3,216,853	+		IAI47_15255	0.14	-0.1
3,216,853	+		IAI47_15255	0.14	+0.5
3,216,854	-		IAI47_15255	0.14	+0.8
3,216,854	-		IAI47_15255	0.14	+0.9
3,216,854	-		IAI47_15255	0.14	-1.4
3,216,854	-		IAI47_15255	0.14	-0.1
3,216,854	-		IAI47_15255	0.14	-0.8
3,216,950	-		IAI47_15255	0.27	+1.5
3,217,080	+		IAI47_15255	0.45	+0.8
3,217,080	+		IAI47_15255	0.45	+1.3
3,217,080	+		IAI47_15255	0.45	-1.2
3,217,081	-		IAI47_15255	0.45	+0.8
3,217,081	-		IAI47_15255	0.45	+0.2
3,217,083	+		IAI47_15255	0.45	+1.6
3,217,083	+		IAI47_15255	0.45	+0.0
3,217,083	+		IAI47_15255	0.45	+0.0
3,217,083	+		IAI47_15255	0.45	-0.7
3,217,083	+		IAI47_15255	0.45	+0.4
3,217,083	+		IAI47_15255	0.45	+0.7
3,217,084	-		IAI47_15255	0.45	-1.0
3,217,084	-		IAI47_15255	0.45	-0.2
3,217,228	+		IAI47_15255	0.65	-0.8
3,217,283	-		IAI47_15255	0.73	+0.0
3,217,283	-		IAI47_15255	0.73	-0.9
3,217,283	-		IAI47_15255	0.73	-0.8
3,217,321	-		IAI47_15255	0.78	+0.2
3,217,339	+		IAI47_15255	0.80	+0.5
3,217,339	+		IAI47_15255	0.80	-1.5
3,217,340	-		IAI47_15255	0.80	-0.2
3,217,340	-		IAI47_15255	0.80	-0.3
3,217,450	-				+0.0
3,217,466	-				-0.1
3,217,501	+				-0.8
3,217,501	+				-0.2
3,217,501	+				-0.4
3,217,502	-				-1.3
3,217,502	-				+1.0
3,217,502	-				+0.1
3,217,502	-				+0.8
3,217,502	-				+0.3
3,217,502	-				+1.4