Strain Fitness in Pantoea sp. MT58 around IAI47_13730

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,905,449	+		IAI47_13725	0.74	+1.6
2,905,449	+		IAI47_13725	0.74	+0.5
2,905,450	-		IAI47_13725	0.74	+0.8
2,905,450	-		IAI47_13725	0.74	+0.6
2,905,594	-		IAI47_13725	0.83	+0.8
2,905,594	-		IAI47_13725	0.83	+0.1
2,905,604	+		IAI47_13725	0.83	-0.6
2,905,604	+		IAI47_13725	0.83	+0.8
2,905,604	+		IAI47_13725	0.83	-0.9
2,905,605	-		IAI47_13725	0.84	+0.4
2,905,613	+		IAI47_13725	0.84	+1.4
2,905,613	+		IAI47_13725	0.84	-0.8
2,905,616	+		IAI47_13725	0.84	-1.3
2,905,616	+		IAI47_13725	0.84	+0.6
2,905,617	-		IAI47_13725	0.84	+1.6
2,905,617	-		IAI47_13725	0.84	+1.1
2,905,680	+		IAI47_13725	0.88	+0.8
2,905,681	-		IAI47_13725	0.88	+2.0
2,905,684	-		IAI47_13725	0.89	+1.0
2,905,713	+				+1.0
2,905,719	+				+0.7
2,905,720	-				+1.8
2,905,745	+				-1.2
2,905,745	+				+1.7
2,905,855	-				+0.7
2,905,855	-				+0.8
2,905,855	-				+0.6
2,905,858	+				-1.2
2,905,863	+				+2.1
2,905,863	+				+0.2
2,905,864	-				+1.6
2,905,864	-				+1.2
2,905,864	-				+1.9
2,905,919	-				+0.1
2,905,919	-				+0.7
2,905,919	-				+1.4
2,905,943	-				+2.8
2,905,960	-				-0.2
2,906,003	-				+2.7
2,906,043	-				+0.4
2,906,046	-				-0.4
2,906,099	-				+0.3
2,906,113	-				+1.5
2,906,141	-				+1.2
2,906,171	-				-0.2
2,906,171	-				+0.2
2,906,171	-				+0.7
2,906,172	+				+1.0
2,906,172	+				+0.2
2,906,172	+				-0.2
2,906,173	-				-0.2
2,906,173	-				+1.3
2,906,180	+				+2.4
2,906,286	+				-0.2
2,906,338	+				+0.2
2,906,338	+				-1.2
2,906,338	+				-1.4
2,906,338	+				+0.2
2,906,338	+				-0.8
2,906,338	+				-0.2
2,906,339	-				-0.3
2,906,346	+				+1.0
2,906,346	+				+0.4
2,906,346	+				-0.2
2,906,347	-				-0.3
2,906,347	-				-0.2
2,906,371	+				+1.8
2,906,371	+				-0.6
2,906,371	+				-0.6
2,906,371	+				-0.2
2,906,372	-				+1.0
2,906,372	-				+0.3
2,906,372	-				+1.2
2,906,392	+				+0.1
2,906,392	+				+0.4
2,906,392	+				-1.2
2,906,417	+				-2.3
2,906,417	+				-0.7
2,906,417	+				+0.2
2,906,417	+				+0.6
2,906,418	-				-0.8
2,906,418	-				-1.8
2,906,418	-				+0.7
2,906,418	-				-0.8
2,906,418	-				-0.9
2,906,418	-				-1.2
2,906,418	-				-1.3
2,906,438	+				+0.8
2,906,438	+				-1.5
2,906,439	-				-3.1
2,906,460	+				-0.8
2,906,613	+		IAI47_13730	0.20	-0.8
2,907,099	-		IAI47_13730	0.76	-2.2
2,908,153	+		IAI47_13735	0.72	-0.2