Strain Fitness in Pantoea sp. MT58 around IAI47_13210

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,793,108	+		IAI47_13200	0.66	-0.1
2,793,108	+		IAI47_13200	0.66	+0.8
2,793,108	+		IAI47_13200	0.66	-0.8
2,793,109	-		IAI47_13200	0.66	-0.2
2,793,109	-		IAI47_13200	0.66	+2.0
2,793,109	-		IAI47_13200	0.66	-0.6
2,793,168	+		IAI47_13200	0.74	+0.7
2,793,168	+		IAI47_13200	0.74	+0.1
2,793,169	-		IAI47_13200	0.74	+1.4
2,793,169	-		IAI47_13200	0.74	+0.1
2,793,169	-		IAI47_13200	0.74	+0.0
2,793,169	-		IAI47_13200	0.74	-1.0
2,793,188	+		IAI47_13200	0.77	+0.8
2,793,200	+		IAI47_13200	0.78	-0.1
2,793,208	+		IAI47_13200	0.79	+0.7
2,793,234	+		IAI47_13200	0.83	+0.8
2,793,234	+		IAI47_13200	0.83	+1.0
2,793,234	+		IAI47_13200	0.83	+0.1
2,793,234	+		IAI47_13200	0.83	-0.4
2,793,234	+		IAI47_13200	0.83	+0.8
2,793,234	+		IAI47_13200	0.83	-0.7
2,793,234	+		IAI47_13200	0.83	-0.6
2,793,234	+		IAI47_13200	0.83	+0.8
2,793,235	-		IAI47_13200	0.83	-0.7
2,793,235	-		IAI47_13200	0.83	+0.6
2,793,235	-		IAI47_13200	0.83	-0.2
2,793,235	-		IAI47_13200	0.83	-0.4
2,793,235	-		IAI47_13200	0.83	-0.1
2,793,268	+		IAI47_13200	0.87	+0.6
2,793,269	-		IAI47_13200	0.87	-0.9
2,793,318	+				+1.4
2,793,318	+				-0.7
2,793,318	+				+0.5
2,793,318	+				+0.8
2,793,318	+				+0.8
2,793,318	+				+0.4
2,793,318	+				+0.5
2,793,318	+				+1.0
2,793,319	-				-0.3
2,793,319	-				+0.2
2,793,319	-				-1.6
2,793,319	-				+0.6
2,793,319	-				-2.6
2,793,319	-				+0.0
2,793,319	-				-0.5
2,793,320	+				-0.3
2,793,321	-				-0.5
2,793,321	-				+2.6
2,793,330	+				+0.3
2,793,330	+				+0.8
2,793,330	+				+0.6
2,793,331	-				-0.6
2,793,331	-				+0.3
2,793,332	+				+0.1
2,793,333	-				+1.1
2,793,356	+				+0.6
2,793,356	+				+0.2
2,793,356	+				-0.2
2,793,357	-				-0.4
2,793,360	+				-0.4
2,793,363	+				+0.0
2,793,363	+				+0.4
2,793,364	-				-0.7
2,793,364	-				+0.5
2,793,364	-				+1.0
2,793,375	+				+2.4
2,793,376	-				-1.5
2,793,425	+				+0.8
2,793,425	+				+0.6
2,793,425	+				-0.4
2,793,425	+				-0.3
2,793,426	-				+0.0
2,793,426	-				-0.2
2,793,426	-				+1.6
2,793,426	-				-1.1
2,793,426	-				-1.2
2,793,426	-				-1.3
2,793,426	-				-0.2
2,793,497	+				+0.8
2,793,509	-		IAI47_13205	0.10	-1.6
2,793,511	+		IAI47_13205	0.11	+0.2
2,793,512	-		IAI47_13205	0.11	+0.2
2,793,512	-		IAI47_13205	0.11	+0.1
2,793,512	-		IAI47_13205	0.11	+0.1
2,793,521	+		IAI47_13205	0.12	+2.0
2,793,577	-		IAI47_13205	0.21	+1.1
2,793,577	-		IAI47_13205	0.21	+0.2
2,793,597	-		IAI47_13205	0.24	-2.4
2,793,624	-		IAI47_13205	0.28	+0.4
2,793,638	+		IAI47_13205	0.30	-0.2
2,793,663	+		IAI47_13205	0.34	+0.7
2,793,663	+		IAI47_13205	0.34	+0.1
2,793,663	+		IAI47_13205	0.34	-0.3
2,793,663	+		IAI47_13205	0.34	-1.3
2,793,663	+		IAI47_13205	0.34	+0.1
2,793,664	-		IAI47_13205	0.34	+0.9
2,793,664	-		IAI47_13205	0.34	-0.6
2,793,664	-		IAI47_13205	0.34	-1.5
2,793,721	+		IAI47_13205	0.42	+0.8
2,793,737	+		IAI47_13205	0.45	-0.2
2,793,737	+		IAI47_13205	0.45	-1.0
2,793,737	+		IAI47_13205	0.45	-0.6
2,793,737	+		IAI47_13205	0.45	-1.1
2,793,737	+		IAI47_13205	0.45	-1.0
2,793,738	-		IAI47_13205	0.45	+1.0
2,793,750	+		IAI47_13205	0.47	-2.3
2,793,750	+		IAI47_13205	0.47	+0.6
2,793,751	-		IAI47_13205	0.47	+0.7
2,793,752	+		IAI47_13205	0.47	-2.9
2,793,753	-		IAI47_13205	0.47	+0.2
2,793,764	+		IAI47_13205	0.49	-0.4
2,793,764	+		IAI47_13205	0.49	-1.2
2,793,765	-		IAI47_13205	0.49	-0.6
2,793,789	-		IAI47_13205	0.53	+0.2
2,793,791	+		IAI47_13205	0.53	+0.3
2,793,791	+		IAI47_13205	0.53	-1.1
2,793,791	+		IAI47_13205	0.53	+0.2
2,793,792	-		IAI47_13205	0.53	-0.0
2,793,850	-		IAI47_13205	0.62	-1.2
2,793,857	+		IAI47_13205	0.63	-0.1
2,793,857	+		IAI47_13205	0.63	-0.0
2,793,858	-		IAI47_13205	0.63	-0.2
2,793,858	-		IAI47_13205	0.63	-0.2
2,793,878	+		IAI47_13205	0.66	+1.8
2,793,879	-		IAI47_13205	0.66	+2.1
2,793,879	-		IAI47_13205	0.66	-2.2
2,793,923	+		IAI47_13205	0.73	-0.1
2,793,923	+		IAI47_13205	0.73	-0.6
2,793,924	-		IAI47_13205	0.73	-1.4
2,793,924	-		IAI47_13205	0.73	-0.4
2,793,935	+		IAI47_13205	0.75	-0.2
2,793,935	+		IAI47_13205	0.75	-0.4
2,793,936	-		IAI47_13205	0.75	-0.8
2,793,942	-		IAI47_13205	0.76	+0.1
2,793,980	+		IAI47_13205	0.82	-0.5
2,793,980	+		IAI47_13205	0.82	+0.1
2,793,981	-		IAI47_13205	0.82	-2.2
2,793,981	-		IAI47_13205	0.82	+0.3
2,793,990	-		IAI47_13205	0.83	-1.0
2,794,032	+		IAI47_13205	0.90	+1.4
2,794,032	+		IAI47_13205	0.90	-0.8
2,794,032	+		IAI47_13205	0.90	-0.2
2,794,032	+		IAI47_13205	0.90	-0.8
2,794,032	+		IAI47_13205	0.90	-0.3
2,794,032	+		IAI47_13205	0.90	+0.8
2,794,032	+		IAI47_13205	0.90	-0.6
2,794,032	+		IAI47_13205	0.90	+0.3
2,794,032	+		IAI47_13205	0.90	+0.2
2,794,032	+		IAI47_13205	0.90	-1.5
2,794,033	-		IAI47_13205	0.90	+1.3
2,794,033	-		IAI47_13205	0.90	+1.8
2,794,043	+				-1.1
2,794,043	+				-0.0
2,794,043	+				-1.8
2,794,043	+				+0.3
2,794,044	-				-1.1
2,794,044	-				+0.8
2,794,044	-				+2.2
2,794,044	-				-0.4
2,794,044	-				+0.7
2,794,108	+				-2.2
2,794,108	+				-0.7
2,794,108	+				+0.8
2,794,108	+				+0.2
2,794,109	-				-2.2
2,794,109	-				+0.2
2,794,153	+				+0.9
2,794,153	+				+0.2
2,794,153	+				+2.1
2,794,153	+				-0.4
2,794,154	-				-0.3
2,794,154	-				+0.1
2,794,193	-		IAI47_13210	0.13	-0.3
2,794,214	-		IAI47_13210	0.16	-1.0
2,794,228	-		IAI47_13210	0.18	+0.8
2,794,228	-		IAI47_13210	0.18	+0.8
2,794,228	-		IAI47_13210	0.18	-0.3
2,794,237	+		IAI47_13210	0.19	-0.4
2,794,237	+		IAI47_13210	0.19	-0.4
2,794,237	+		IAI47_13210	0.19	+0.5
2,794,237	+		IAI47_13210	0.19	-0.2
2,794,341	+		IAI47_13210	0.34	-0.4
2,794,341	+		IAI47_13210	0.34	+0.8
2,794,341	+		IAI47_13210	0.34	+0.1
2,794,341	+		IAI47_13210	0.34	+0.8
2,794,342	-		IAI47_13210	0.34	+0.1
2,794,342	-		IAI47_13210	0.34	-0.4
2,794,342	-		IAI47_13210	0.34	-0.3
2,794,342	-		IAI47_13210	0.34	+0.4
2,794,342	-		IAI47_13210	0.34	-0.2
2,794,342	-		IAI47_13210	0.34	+0.5
2,794,342	-		IAI47_13210	0.34	-0.6
2,794,403	-		IAI47_13210	0.42	-0.3
2,794,403	-		IAI47_13210	0.42	+0.3
2,794,624	+		IAI47_13210	0.73	+0.7
2,794,625	-		IAI47_13210	0.73	-1.0
2,794,625	-		IAI47_13210	0.73	-0.3
2,794,721	-		IAI47_13210	0.86	-0.2
2,794,726	+		IAI47_13210	0.87	+1.6
2,794,727	-		IAI47_13210	0.87	-1.0
2,794,851	+				+3.1
2,794,868	+				-1.4
2,794,868	+				-0.4
2,794,869	-				+0.3
2,794,871	+				+0.2
2,794,871	+				-1.1
2,794,871	+				+0.4
2,794,871	+				+1.0
2,794,872	-				+1.0
2,794,872	-				-0.2
2,794,942	+				-1.2
2,794,942	+				+2.4
2,794,943	-				-0.6
2,795,074	+		IAI47_13215	0.19	+1.8
2,795,075	-		IAI47_13215	0.19	-0.9
2,795,152	-		IAI47_13215	0.28	-0.8
2,795,182	+		IAI47_13215	0.31	+1.1
2,795,183	-		IAI47_13215	0.31	+0.8
2,795,183	-		IAI47_13215	0.31	-0.5
2,795,272	+		IAI47_13215	0.40	+0.8
2,795,272	+		IAI47_13215	0.40	+1.6
2,795,273	-		IAI47_13215	0.41	-0.2
2,795,273	-		IAI47_13215	0.41	+0.1
2,795,273	-		IAI47_13215	0.41	+0.0
2,795,273	-		IAI47_13215	0.41	+0.2
2,795,273	-		IAI47_13215	0.41	-0.6
2,795,273	-		IAI47_13215	0.41	+0.4
2,795,273	-		IAI47_13215	0.41	+0.0
2,795,472	+		IAI47_13215	0.62	+0.8
2,795,472	+		IAI47_13215	0.62	-0.8
2,795,472	+		IAI47_13215	0.62	+1.5
2,795,472	+		IAI47_13215	0.62	+1.8
2,795,473	-		IAI47_13215	0.62	+0.2
2,795,473	-		IAI47_13215	0.62	+0.8
2,795,473	-		IAI47_13215	0.62	-0.3
2,795,473	-		IAI47_13215	0.62	+0.2
2,795,473	-		IAI47_13215	0.62	-0.5
2,795,473	-		IAI47_13215	0.62	+0.1
2,795,521	+		IAI47_13215	0.67	+0.3
2,795,559	+		IAI47_13215	0.71	+0.4
2,795,559	+		IAI47_13215	0.71	+0.7
2,795,559	+		IAI47_13215	0.71	+0.1
2,795,560	-		IAI47_13215	0.71	-0.6
2,795,560	-		IAI47_13215	0.71	-0.5
2,795,560	-		IAI47_13215	0.71	+0.8
2,795,560	-		IAI47_13215	0.71	-1.6
2,795,560	-		IAI47_13215	0.71	+0.2
2,795,568	+		IAI47_13215	0.72	-1.6
2,795,568	+		IAI47_13215	0.72	-1.6
2,795,568	+		IAI47_13215	0.72	-1.0
2,795,631	+		IAI47_13215	0.79	+0.1
2,795,631	+		IAI47_13215	0.79	+0.8
2,795,632	-		IAI47_13215	0.79	+0.4
2,795,632	-		IAI47_13215	0.79	+0.2
2,795,706	+		IAI47_13215	0.87	+0.1
2,795,706	+		IAI47_13215	0.87	+1.6
2,795,714	-		IAI47_13215	0.88	+0.6
2,795,725	+		IAI47_13215	0.89	-0.2
2,795,725	+		IAI47_13215	0.89	-0.5
2,795,726	-		IAI47_13215	0.89	+1.1
2,795,726	-		IAI47_13215	0.89	+0.8
2,795,770	-				+0.4