Strain Fitness in Pantoea sp. MT58 around IAI47_13140

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,776,463	-		IAI47_13135	0.23	+0.2
2,776,463	-		IAI47_13135	0.23	-0.5
2,776,463	-		IAI47_13135	0.23	-1.2
2,776,463	-		IAI47_13135	0.23	+2.0
2,776,481	+		IAI47_13135	0.25	+0.5
2,776,482	-		IAI47_13135	0.25	+0.0
2,776,482	-		IAI47_13135	0.25	-1.2
2,776,482	-		IAI47_13135	0.25	+0.6
2,776,535	-		IAI47_13135	0.30	+0.1
2,776,535	-		IAI47_13135	0.30	+1.8
2,776,584	-		IAI47_13135	0.35	-0.2
2,776,584	-		IAI47_13135	0.35	+2.0
2,776,593	-		IAI47_13135	0.36	-0.4
2,776,607	+		IAI47_13135	0.38	+0.8
2,776,607	+		IAI47_13135	0.38	-1.2
2,776,607	+		IAI47_13135	0.38	+0.7
2,776,607	+		IAI47_13135	0.38	-0.2
2,776,607	+		IAI47_13135	0.38	+2.6
2,776,608	-		IAI47_13135	0.38	+1.0
2,776,608	-		IAI47_13135	0.38	+0.4
2,776,608	-		IAI47_13135	0.38	+0.5
2,776,777	+		IAI47_13135	0.55	-1.4
2,776,777	+		IAI47_13135	0.55	-0.4
2,776,777	+		IAI47_13135	0.55	+0.8
2,776,777	+		IAI47_13135	0.55	-1.6
2,776,778	-		IAI47_13135	0.56	-0.6
2,776,778	-		IAI47_13135	0.56	+0.0
2,776,778	-		IAI47_13135	0.56	+0.3
2,776,778	-		IAI47_13135	0.56	+0.3
2,776,778	-		IAI47_13135	0.56	+0.2
2,776,892	+		IAI47_13135	0.67	+0.1
2,776,934	+		IAI47_13135	0.72	+1.5
2,776,934	+		IAI47_13135	0.72	+0.0
2,776,934	+		IAI47_13135	0.72	-1.2
2,776,935	-		IAI47_13135	0.72	+0.0
2,776,935	-		IAI47_13135	0.72	-1.5
2,776,997	+		IAI47_13135	0.78	-0.5
2,777,079	+		IAI47_13135	0.87	+0.4
2,777,080	-		IAI47_13135	0.87	-0.2
2,777,080	-		IAI47_13135	0.87	-1.6
2,777,080	-		IAI47_13135	0.87	+0.8
2,777,097	-		IAI47_13135	0.89	+0.5
2,777,102	+		IAI47_13135	0.89	+0.8
2,777,103	-		IAI47_13135	0.89	+0.7
2,777,103	-		IAI47_13135	0.89	-0.8
2,777,103	-		IAI47_13135	0.89	+0.1
2,777,103	-		IAI47_13135	0.89	-0.2
2,777,109	+				-0.1
2,777,109	+				-0.5
2,777,123	-				+1.2
2,777,212	+				-2.4
2,777,249	-				+0.1
2,777,287	-				-0.3
2,777,287	-				-0.8
2,777,287	-				-0.1
2,777,298	+				+0.2
2,777,298	+				-0.3
2,777,298	+				-0.0
2,777,299	-				+0.6
2,777,299	-				-0.0
2,777,308	-				-0.4
2,777,332	-				+0.6
2,777,332	-				+0.5
2,777,333	+				+0.4
2,777,334	-				-1.0
2,777,334	-				-0.2
2,777,368	+				-0.2
2,777,368	+				-1.3
2,777,411	+				+0.3
2,777,423	+				-0.1
2,777,423	+				+0.5
2,777,423	+				+0.2
2,777,423	+				-0.9
2,777,423	+				-0.1
2,777,423	+				-0.5
2,777,423	+				-0.7
2,777,423	+				-0.2
2,777,424	-				-0.2
2,777,424	-				-0.5
2,777,424	-				-0.4
2,777,424	-				+0.5
2,777,426	+				-0.0
2,777,426	+				+0.8
2,777,426	+				-1.2
2,777,426	+				-0.0
2,777,427	-				-0.1
2,777,443	-				-0.6
2,777,443	-				-0.1
2,777,443	-				-0.5
2,777,460	+				-1.0
2,777,472	+				+0.4
2,777,625	+		IAI47_13140	0.13	-1.0
2,777,625	+		IAI47_13140	0.13	+1.1
2,777,626	-		IAI47_13140	0.13	+0.3
2,777,626	-		IAI47_13140	0.13	+0.4
2,777,644	+		IAI47_13140	0.15	-0.7
2,777,988	-		IAI47_13140	0.43	+0.0
2,777,988	-		IAI47_13140	0.43	-0.2
2,777,988	-		IAI47_13140	0.43	-0.3
2,777,991	+		IAI47_13140	0.43	-0.5
2,777,991	+		IAI47_13140	0.43	-0.6
2,777,991	+		IAI47_13140	0.43	+0.8
2,777,991	+		IAI47_13140	0.43	+0.3
2,777,992	-		IAI47_13140	0.43	-0.9
2,778,006	+		IAI47_13140	0.44	-0.1
2,778,068	-		IAI47_13140	0.49	+0.4
2,778,068	-		IAI47_13140	0.49	+0.2
2,778,076	-		IAI47_13140	0.50	-0.0
2,778,105	+		IAI47_13140	0.52	-1.5
2,778,105	+		IAI47_13140	0.52	-0.2
2,778,105	+		IAI47_13140	0.52	-1.2
2,778,105	+		IAI47_13140	0.52	+0.8
2,778,105	+		IAI47_13140	0.52	-0.4
2,778,105	+		IAI47_13140	0.52	-0.2
2,778,105	+		IAI47_13140	0.52	+0.5
2,778,106	-		IAI47_13140	0.52	-1.1
2,778,106	-		IAI47_13140	0.52	+0.6
2,778,106	-		IAI47_13140	0.52	-1.5
2,778,106	-		IAI47_13140	0.52	-0.4
2,778,106	-		IAI47_13140	0.52	-0.7
2,778,106	-		IAI47_13140	0.52	-1.8
2,778,253	-		IAI47_13140	0.64	-0.4
2,778,253	-		IAI47_13140	0.64	-2.2
2,778,276	+		IAI47_13140	0.66	-0.5
2,778,276	+		IAI47_13140	0.66	+0.1
2,778,297	+		IAI47_13140	0.68	-0.2
2,778,297	+		IAI47_13140	0.68	+0.0
2,778,298	-		IAI47_13140	0.68	+1.2
2,778,298	-		IAI47_13140	0.68	+0.4
2,778,388	+		IAI47_13140	0.75	-0.4
2,778,388	+		IAI47_13140	0.75	-0.3
2,778,388	+		IAI47_13140	0.75	+0.1
2,778,388	+		IAI47_13140	0.75	-0.8
2,778,388	+		IAI47_13140	0.75	+0.2
2,778,388	+		IAI47_13140	0.75	-0.6
2,778,389	-		IAI47_13140	0.75	+0.1
2,778,389	-		IAI47_13140	0.75	+1.8
2,778,389	-		IAI47_13140	0.75	-0.5
2,778,389	-		IAI47_13140	0.75	+0.8
2,778,398	+		IAI47_13140	0.76	+0.1
2,778,399	-		IAI47_13140	0.76	+0.7
2,778,421	-		IAI47_13140	0.78	-1.0
2,778,665	+				+0.0
2,778,666	-				-0.6
2,778,694	+				-0.0
2,778,694	+				-0.3
2,778,694	+				-1.2
2,778,694	+				-0.2
2,778,694	+				-1.5
2,778,694	+				-1.5
2,778,695	-				-0.2
2,778,695	-				+0.7
2,778,695	-				+0.0
2,778,710	+				+0.8
2,778,725	+				-0.8
2,778,726	-				-1.5
2,778,726	-				-0.2
2,778,726	-				+1.8
2,778,733	+				-0.8
2,778,734	-				-0.4
2,778,787	-		IAI47_13145	0.12	+0.7
2,778,844	+		IAI47_13145	0.19	-0.6
2,778,892	-		IAI47_13145	0.26	+1.2
2,778,906	+		IAI47_13145	0.28	-1.5
2,778,906	+		IAI47_13145	0.28	-0.8
2,778,907	-		IAI47_13145	0.28	-0.1
2,778,907	-		IAI47_13145	0.28	+0.1
2,778,942	+		IAI47_13145	0.32	+1.1
2,779,113	+		IAI47_13145	0.55	+0.4
2,779,113	+		IAI47_13145	0.55	+0.2
2,779,114	-		IAI47_13145	0.55	-0.4
2,779,187	+		IAI47_13145	0.65	-1.0
2,779,188	-		IAI47_13145	0.65	+1.3
2,779,188	-		IAI47_13145	0.65	+1.5
2,779,188	-		IAI47_13145	0.65	-1.3
2,779,191	+		IAI47_13145	0.65	+0.5
2,779,191	+		IAI47_13145	0.65	+0.0
2,779,191	+		IAI47_13145	0.65	-0.2
2,779,192	-		IAI47_13145	0.65	+1.0
2,779,326	+		IAI47_13145	0.83	+0.8
2,779,327	-		IAI47_13145	0.83	+2.0
2,779,327	-		IAI47_13145	0.83	+0.5
2,779,327	-		IAI47_13145	0.83	-2.4
2,779,331	+		IAI47_13145	0.84	-0.8
2,779,332	-		IAI47_13145	0.84	-0.8
2,779,332	-		IAI47_13145	0.84	+1.2
2,779,375	+		IAI47_13145	0.89	+0.2
2,779,376	-		IAI47_13145	0.89	-0.3
2,779,376	-		IAI47_13145	0.89	+1.8
2,779,376	-		IAI47_13145	0.89	+0.0
2,779,376	-		IAI47_13145	0.89	-0.2
2,779,376	-		IAI47_13145	0.89	-1.1
2,779,376	-		IAI47_13145	0.89	+1.3
2,779,376	-		IAI47_13145	0.89	-1.1
2,779,376	-		IAI47_13145	0.89	-0.2
2,779,467	+				+1.3
2,779,467	+				+1.5
2,779,468	-				+2.0
2,779,493	+				+0.5
2,779,510	-				-0.0
2,779,510	-				+0.7
2,779,510	-				-1.5
2,779,510	-				+1.5
2,779,510	-				-0.6
2,779,510	-				-2.0
2,779,510	-				+1.4
2,779,510	-				-2.0
2,779,518	-				+0.4
2,779,617	+				+0.1
2,779,655	+				-1.2
2,779,655	+				+1.2
2,779,655	+				+0.2
2,779,655	+				-0.2
2,779,655	+				+1.8
2,779,656	-				+0.0
2,779,656	-				+0.1
2,779,656	-				-1.9
2,779,656	-				-0.3
2,779,675	-				-0.0
2,779,675	-				+3.8
2,779,675	-				-0.8
2,779,675	-				-1.1
2,779,675	-				-0.8
2,779,675	-				+0.2
2,779,675	-				-0.3
2,779,675	-				+0.8
2,779,675	-				-0.1