Strain Fitness in Pantoea sp. MT58 around IAI47_12175

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,576,193	+				-0.6
2,576,194	-				-0.2
2,576,217	+				-0.1
2,576,217	+				+0.9
2,576,217	+				+1.2
2,576,218	-				+1.5
2,576,249	+				+1.0
2,576,250	-				+0.8
2,576,257	+				+0.0
2,576,257	+				+0.5
2,576,257	+				-0.6
2,576,258	-				-0.3
2,576,258	-				-0.4
2,576,258	-				-0.3
2,576,268	+				+0.1
2,576,294	-				+0.0
2,576,300	+				-0.1
2,576,301	-				-0.2
2,576,301	-				+0.2
2,576,301	-				+1.1
2,576,301	-				+1.7
2,576,344	+				-0.3
2,576,344	+				+0.8
2,576,468	+		IAI47_12170	0.20	+1.4
2,576,553	+		IAI47_12170	0.33	+0.9
2,576,554	-		IAI47_12170	0.33	+0.2
2,576,554	-		IAI47_12170	0.33	+1.4
2,576,554	-		IAI47_12170	0.33	+1.1
2,576,590	+		IAI47_12170	0.39	-0.2
2,576,590	+		IAI47_12170	0.39	+2.1
2,576,590	+		IAI47_12170	0.39	+0.6
2,576,590	+		IAI47_12170	0.39	-0.2
2,576,590	+		IAI47_12170	0.39	+0.7
2,576,590	+		IAI47_12170	0.39	+1.5
2,576,591	-		IAI47_12170	0.39	+0.9
2,576,591	-		IAI47_12170	0.39	+1.0
2,576,591	-		IAI47_12170	0.39	+0.1
2,576,591	-		IAI47_12170	0.39	-0.8
2,576,591	-		IAI47_12170	0.39	-1.2
2,576,592	+		IAI47_12170	0.39	-0.8
2,576,592	+		IAI47_12170	0.39	+0.1
2,576,592	+		IAI47_12170	0.39	-0.0
2,576,592	+		IAI47_12170	0.39	+0.5
2,576,592	+		IAI47_12170	0.39	+0.5
2,576,593	-		IAI47_12170	0.39	+0.7
2,576,593	-		IAI47_12170	0.39	+0.2
2,576,593	-		IAI47_12170	0.39	-0.1
2,576,593	-		IAI47_12170	0.39	-1.0
2,576,600	+		IAI47_12170	0.40	+0.5
2,576,600	+				+1.4
2,576,600	+		IAI47_12170	0.40	+0.1
2,576,601	-		IAI47_12170	0.40	+1.8
2,576,601	-		IAI47_12170	0.40	+0.0
2,576,623	+		IAI47_12170	0.44	+0.6
2,576,623	+		IAI47_12170	0.44	-0.4
2,576,623	+		IAI47_12170	0.44	+0.6
2,576,623	+		IAI47_12170	0.44	+0.6
2,576,623	+		IAI47_12170	0.44	-0.2
2,576,623	+		IAI47_12170	0.44	+0.3
2,576,623	+		IAI47_12170	0.44	+0.8
2,576,624	-		IAI47_12170	0.44	-0.1
2,576,624	-		IAI47_12170	0.44	+1.5
2,576,624	-		IAI47_12170	0.44	-0.6
2,576,658	+		IAI47_12170	0.49	-0.3
2,576,658	+		IAI47_12170	0.49	-1.2
2,576,659	-		IAI47_12170	0.49	-0.9
2,576,821	-		IAI47_12170	0.74	+0.4
2,576,821	-		IAI47_12170	0.74	+1.9
2,576,929	-				-0.1
2,576,976	+				+0.4
2,576,977	-				+1.3
2,576,982	+				-0.9
2,576,982	+				+1.5
2,576,982	+				+0.3
2,576,982	+				+0.4
2,576,983	-				-0.8
2,576,983	-				+0.1
2,576,983	-				-0.1
2,576,983	-				+0.4
2,576,983	-				-1.1
2,576,984	+				-0.2
2,576,985	-				+0.6
2,576,985	-				+0.5
2,576,985	-				+0.5
2,576,992	+				+1.0
2,576,992	+				+0.3
2,576,992	+				-0.1
2,576,992	+				-0.4
2,576,993	-				+0.3
2,576,993	-				+0.8
2,576,993	-				+0.1
2,577,001	-				+0.4
2,577,001	-				+0.5
2,577,011	+				+0.8
2,577,011	+				-2.6
2,577,011	+				-1.0
2,577,012	-				-0.9
2,577,012	-				+0.2
2,577,025	-				-1.6
2,577,050	+				-0.2
2,577,050	+				-1.0
2,577,050	+				+2.4
2,577,051	-				+0.4
2,577,051	-				-0.8
2,577,051	-				-2.0
2,577,051	-				+0.1
2,577,053	+				+0.2
2,577,053	+				-1.1
2,577,053	+				+0.8
2,577,054	-				+1.0
2,577,054	-				-2.6
2,577,054	-				-0.2
2,577,085	+				-0.7
2,577,086	-				-0.2
2,577,086	-				-1.7
2,577,099	+				+0.8
2,577,100	-				-1.4
2,577,100	-				-0.2
2,577,144	-		IAI47_12175	0.14	-1.5
2,577,144	-		IAI47_12175	0.14	+0.2
2,577,285	+		IAI47_12175	0.60	-0.6
2,577,285	+		IAI47_12175	0.60	-0.2
2,577,285	+		IAI47_12175	0.60	+0.4
2,577,285	+		IAI47_12175	0.60	-1.6
2,577,285	+		IAI47_12175	0.60	+0.8
2,577,285	+		IAI47_12175	0.60	-1.8
2,577,286	-		IAI47_12175	0.60	-1.8
2,577,286	-		IAI47_12175	0.60	+0.8
2,577,289	-		IAI47_12175	0.61	-0.2
2,577,327	+		IAI47_12175	0.73	-1.9
2,577,392	-				+0.6
2,577,392	-				+0.4
2,577,392	-				+0.1
2,577,395	+				+0.7
2,577,396	-				-0.5
2,577,402	+				+0.5
2,577,403	-				+0.0
2,577,406	+				-0.4
2,577,406	+				+0.7
2,577,406	+				-0.0
2,577,406	+				-0.6
2,577,406	+				+1.4
2,577,407	-				-0.0
2,577,407	-				+0.0
2,577,407	-				+0.5
2,577,419	+				-0.1
2,577,419	+				-0.6
2,577,420	-				-0.1
2,577,436	+				+0.8
2,577,436	+				-1.0
2,577,436	+				+0.1
2,577,436	+				-1.0
2,577,436	+				-1.4
2,577,436	+				-0.0
2,577,436	+				+0.4
2,577,436	+				+0.3
2,577,437	-				-0.0
2,577,437	-				+0.3
2,577,437	-				+0.0
2,577,437	-				+0.9
2,577,440	+				+0.3
2,577,440	+				+0.1
2,577,440	+				-0.2
2,577,440	+				-2.6
2,577,440	+				-0.2
2,577,441	-				+1.0
2,577,441	-				-0.2
2,577,441	-				+1.2
2,577,441	-				-1.0
2,577,441	-				+0.1
2,577,515	+		IAI47_12180	0.23	-1.1
2,577,516	-		IAI47_12180	0.24	+0.8
2,577,516	-		IAI47_12180	0.24	-0.4
2,577,536	+		IAI47_12180	0.28	+0.0
2,577,537	-		IAI47_12180	0.28	-0.3
2,577,548	+		IAI47_12180	0.31	-0.1
2,577,548	+		IAI47_12180	0.31	+1.0
2,577,549	-		IAI47_12180	0.31	-0.4
2,577,567	-		IAI47_12180	0.35	+1.0
2,577,576	+		IAI47_12180	0.38	-0.2
2,577,577	-		IAI47_12180	0.38	-0.7
2,577,577	-		IAI47_12180	0.38	+0.5
2,577,577	-		IAI47_12180	0.38	-0.8
2,577,577	-		IAI47_12180	0.38	-0.8
2,577,630	+		IAI47_12180	0.50	-0.7
2,577,630	+		IAI47_12180	0.50	-0.1
2,577,631	-		IAI47_12180	0.50	-0.1
2,577,665	+		IAI47_12180	0.58	-0.3
2,577,666	-		IAI47_12180	0.58	+1.8
2,577,741	+		IAI47_12180	0.76	-0.9
2,577,742	-		IAI47_12180	0.76	+1.2
2,577,792	+		IAI47_12180	0.88	+1.1
2,577,792	+		IAI47_12180	0.88	+0.0
2,577,812	+				-0.9
2,577,812	+				-0.9
2,577,813	-				-1.6
2,577,829	+				+1.8
2,577,856	-				-0.4
2,577,860	+				-0.0
2,577,860	+				-0.9
2,577,890	+				-1.5
2,577,902	-				+0.8
2,577,910	+				-1.6
2,577,939	+				+1.0
2,577,939	+				-0.0
2,577,940	-				-0.1
2,577,940	-				+0.2
2,578,109	+				-1.4
2,578,109	+				+1.1
2,578,155	+				+1.4
2,578,156	-				+0.8
2,578,156	-				+1.1
2,578,176	+				+0.2
2,578,176	+				-0.6
2,578,177	-				-0.5
2,578,177	-				-0.9
2,578,177	-				+0.8
2,578,177	-				+1.2