Strain Fitness in Pantoea sp. MT58 around IAI47_11940

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,526,045	+		IAI47_11935	0.40	-0.8
2,526,045	+		IAI47_11935	0.40	-2.4
2,526,045	+		IAI47_11935	0.40	-1.1
2,526,045	+		IAI47_11935	0.40	-0.8
2,526,045	+		IAI47_11935	0.40	-0.5
2,526,045	+		IAI47_11935	0.40	-2.0
2,526,046	-		IAI47_11935	0.40	-2.1
2,526,046	-		IAI47_11935	0.40	-3.0
2,526,046	-		IAI47_11935	0.40	-3.1
2,526,046	-		IAI47_11935	0.40	-2.8
2,526,046	-		IAI47_11935	0.40	-0.6
2,526,046	-		IAI47_11935	0.40	-3.3
2,526,046	-		IAI47_11935	0.40	-2.0
2,526,067	+		IAI47_11935	0.41	-2.7
2,526,068	-		IAI47_11935	0.41	-3.0
2,526,074	+		IAI47_11935	0.42	-2.2
2,526,074	+		IAI47_11935	0.42	-3.4
2,526,075	-		IAI47_11935	0.42	-1.8
2,526,075	-		IAI47_11935	0.42	-2.3
2,526,180	-		IAI47_11935	0.49	-2.8
2,526,226	+		IAI47_11935	0.52	-1.6
2,526,226	+		IAI47_11935	0.52	-3.3
2,526,227	-		IAI47_11935	0.52	-1.8
2,526,249	+		IAI47_11935	0.54	-2.7
2,526,249	+		IAI47_11935	0.54	-3.2
2,526,250	-		IAI47_11935	0.54	-3.6
2,526,250	-		IAI47_11935	0.54	-1.8
2,526,251	+		IAI47_11935	0.54	-0.7
2,526,251	+		IAI47_11935	0.54	-1.0
2,526,252	-		IAI47_11935	0.54	-0.8
2,526,252	-		IAI47_11935	0.54	-1.8
2,526,313	+		IAI47_11935	0.58	+0.7
2,526,313	+		IAI47_11935	0.58	-2.3
2,526,314	-		IAI47_11935	0.58	-1.9
2,526,314	-		IAI47_11935	0.58	-1.3
2,526,358	+		IAI47_11935	0.61	-5.1
2,526,358	+		IAI47_11935	0.61	-3.0
2,526,358	+		IAI47_11935	0.61	-3.1
2,526,358	+		IAI47_11935	0.61	-1.3
2,526,358	+		IAI47_11935	0.61	-3.0
2,526,359	-		IAI47_11935	0.61	-3.2
2,526,359	-		IAI47_11935	0.61	-1.5
2,526,359	-		IAI47_11935	0.61	-3.0
2,526,398	+		IAI47_11935	0.64	-2.6
2,526,399	-		IAI47_11935	0.64	-2.5
2,526,417	+		IAI47_11935	0.65	-3.8
2,526,418	-		IAI47_11935	0.65	-1.8
2,526,420	+		IAI47_11935	0.66	-4.6
2,526,420	+		IAI47_11935	0.66	-2.0
2,526,420	+		IAI47_11935	0.66	-2.4
2,526,420	+		IAI47_11935	0.66	-0.3
2,526,420	+		IAI47_11935	0.66	-2.4
2,526,421	-		IAI47_11935	0.66	-1.6
2,526,421	-		IAI47_11935	0.66	-0.8
2,526,421	-		IAI47_11935	0.66	-1.8
2,526,438	-		IAI47_11935	0.67	-2.1
2,526,438	-		IAI47_11935	0.67	-1.3
2,526,438	-		IAI47_11935	0.67	-1.3
2,526,519	-		IAI47_11935	0.72	-4.2
2,526,519	-		IAI47_11935	0.72	-1.1
2,526,557	+		IAI47_11935	0.75	-3.0
2,526,557	+		IAI47_11935	0.75	-2.6
2,526,557	+		IAI47_11935	0.75	-3.1
2,526,557	+		IAI47_11935	0.75	-1.1
2,526,557	+		IAI47_11935	0.75	-2.4
2,526,557	+		IAI47_11935	0.75	-2.4
2,526,557	+		IAI47_11935	0.75	-1.7
2,526,558	-		IAI47_11935	0.75	-2.8
2,526,558	-		IAI47_11935	0.75	-1.4
2,526,558	-		IAI47_11935	0.75	-3.2
2,526,558	-		IAI47_11935	0.75	-2.2
2,526,558	-		IAI47_11935	0.75	-2.8
2,526,558	-		IAI47_11935	0.75	-2.4
2,526,558	-		IAI47_11935	0.75	-2.4
2,526,559	+		IAI47_11935	0.75	-1.3
2,526,559	+		IAI47_11935	0.75	-1.4
2,526,559	+		IAI47_11935	0.75	-4.7
2,526,560	-		IAI47_11935	0.75	-2.4
2,526,560	-		IAI47_11935	0.75	+0.7
2,526,560	-		IAI47_11935	0.75	-3.2
2,526,599	+		IAI47_11935	0.78	-1.6
2,526,639	+		IAI47_11935	0.80	-2.1
2,526,639	+		IAI47_11935	0.80	-2.5
2,526,640	-		IAI47_11935	0.81	-3.3
2,526,658	-		IAI47_11935	0.82	+0.2
2,526,669	+		IAI47_11935	0.83	-2.3
2,526,669	+		IAI47_11935	0.83	-2.4
2,526,670	-		IAI47_11935	0.83	-3.1
2,526,696	+		IAI47_11935	0.84	-0.8
2,526,696	+		IAI47_11935	0.84	-2.3
2,526,696	+		IAI47_11935	0.84	-2.6
2,526,696	+		IAI47_11935	0.84	-1.4
2,526,696	+		IAI47_11935	0.84	-0.8
2,526,696	+		IAI47_11935	0.84	-3.3
2,526,696	+		IAI47_11935	0.84	-3.2
2,526,696	+		IAI47_11935	0.84	-2.0
2,526,696	+		IAI47_11935	0.84	-2.4
2,526,696	+		IAI47_11935	0.84	-1.1
2,526,697	-		IAI47_11935	0.84	-2.6
2,526,697	-		IAI47_11935	0.84	-1.8
2,526,697	-		IAI47_11935	0.84	-1.7
2,526,697	-		IAI47_11935	0.84	-2.3
2,526,697	-				-1.8
2,526,697	-		IAI47_11935	0.84	-1.3
2,526,697	-		IAI47_11935	0.84	-0.3
2,526,699	-		IAI47_11935	0.85	-3.5
2,526,828	+				-2.4
2,526,828	+				-0.6
2,526,828	+				-2.8
2,526,829	-				-1.3
2,526,829	-				-2.4
2,526,829	-				-1.6
2,526,829	-				-0.8
2,526,829	-				-3.0
2,526,883	+				-0.8
2,526,943	+				+0.1
2,526,943	+				-0.3
2,526,943	+				+0.6
2,526,944	-				+2.3
2,526,944	-				-0.5
2,526,944	-				+0.3
2,526,957	+				+1.6
2,526,957	+				-0.9
2,526,958	-				+0.2
2,526,980	+				+0.9
2,526,980	+				+0.6
2,526,981	-				+1.5
2,526,981	-				-1.6
2,526,987	+				-0.3
2,526,987	+				+1.7
2,526,987	+				+0.6
2,526,987	+				-1.3
2,526,987	+				-0.3
2,526,988	-				-0.9
2,526,999	-				+0.0
2,527,001	+				+0.3
2,527,001	+				+1.5
2,527,001	+				+0.7
2,527,001	+				-2.3
2,527,002	-				+1.3
2,527,002	-				+0.6
2,527,026	+				+1.1
2,527,027	-				+1.2
2,527,191	+		IAI47_11940	0.19	+1.2
2,527,191	+		IAI47_11940	0.19	+1.2
2,527,191	+		IAI47_11940	0.19	+0.7
2,527,191	+		IAI47_11940	0.19	+0.1
2,527,191	+		IAI47_11940	0.19	-0.3
2,527,191	+		IAI47_11940	0.19	+0.6
2,527,191	+		IAI47_11940	0.19	+0.2
2,527,192	-		IAI47_11940	0.19	-0.7
2,527,192	-		IAI47_11940	0.19	+0.3
2,527,192	-		IAI47_11940	0.19	+0.3
2,527,192	-		IAI47_11940	0.19	+0.0
2,527,192	-		IAI47_11940	0.19	-0.3
2,527,192	-		IAI47_11940	0.19	-0.7
2,527,192	-		IAI47_11940	0.19	+0.5
2,527,318	+		IAI47_11940	0.30	-0.1
2,527,318	+		IAI47_11940	0.30	-0.6
2,527,318	+		IAI47_11940	0.30	+1.6
2,527,318	+		IAI47_11940	0.30	-0.1
2,527,319	-		IAI47_11940	0.30	+0.9
2,527,365	+		IAI47_11940	0.34	+0.1
2,527,365	+		IAI47_11940	0.34	-0.8
2,527,365	+		IAI47_11940	0.34	+1.3
2,527,365	+		IAI47_11940	0.34	-0.7
2,527,365	+		IAI47_11940	0.34	+1.2
2,527,366	-		IAI47_11940	0.34	+0.3
2,527,366	-		IAI47_11940	0.34	-0.4
2,527,366	-		IAI47_11940	0.34	+0.7
2,527,366	-		IAI47_11940	0.34	+0.1
2,527,366	-		IAI47_11940	0.34	+1.5
2,527,366	-		IAI47_11940	0.34	+0.2
2,527,366	-		IAI47_11940	0.34	+2.5
2,527,372	+		IAI47_11940	0.35	+0.2
2,527,372	+		IAI47_11940	0.35	+1.3
2,527,372	+		IAI47_11940	0.35	+0.7
2,527,372	+		IAI47_11940	0.35	+0.0
2,527,373	-		IAI47_11940	0.35	-0.3
2,527,373	-		IAI47_11940	0.35	-0.3
2,527,376	+		IAI47_11940	0.35	-0.6
2,527,376	+		IAI47_11940	0.35	-0.3
2,527,376	+		IAI47_11940	0.35	+0.0
2,527,376	+		IAI47_11940	0.35	+0.8
2,527,377	-		IAI47_11940	0.35	-0.4
2,527,518	+		IAI47_11940	0.48	+0.1
2,527,518	+		IAI47_11940	0.48	+0.4
2,527,518	+		IAI47_11940	0.48	-0.1
2,527,518	+		IAI47_11940	0.48	+0.7
2,527,518	+		IAI47_11940	0.48	+1.0
2,527,518	+		IAI47_11940	0.48	+0.9
2,527,519	-		IAI47_11940	0.48	-0.3
2,527,519	-		IAI47_11940	0.48	+0.7
2,527,519	-		IAI47_11940	0.48	-0.4
2,527,519	-		IAI47_11940	0.48	+0.2
2,527,519	-		IAI47_11940	0.48	-0.3
2,527,519	-		IAI47_11940	0.48	+0.0
2,527,548	+		IAI47_11940	0.50	-0.1
2,527,548	+		IAI47_11940	0.50	-0.2
2,527,572	+		IAI47_11940	0.52	+0.5
2,527,573	-		IAI47_11940	0.52	-0.6
2,527,573	-		IAI47_11940	0.52	+0.7
2,527,573	-		IAI47_11940	0.52	+0.9
2,527,609	+		IAI47_11940	0.56	-0.4
2,527,609	+		IAI47_11940	0.56	+1.0
2,527,610	-		IAI47_11940	0.56	+0.5
2,527,610	-		IAI47_11940	0.56	+1.8
2,527,610	-		IAI47_11940	0.56	-1.6
2,527,610	-		IAI47_11940	0.56	-2.3
2,527,613	+		IAI47_11940	0.56	-1.8
2,527,629	+		IAI47_11940	0.57	-1.3
2,527,664	+		IAI47_11940	0.61	+0.2
2,527,664	+		IAI47_11940	0.61	+0.0
2,527,665	-		IAI47_11940	0.61	+0.2
2,527,842	+		IAI47_11940	0.76	+0.0
2,527,860	+		IAI47_11940	0.78	+0.0
2,527,897	+		IAI47_11940	0.81	+0.3
2,527,898	-		IAI47_11940	0.81	-0.8
2,527,898	-		IAI47_11940	0.81	+1.4
2,527,935	+		IAI47_11940	0.85	+0.6
2,527,935	+		IAI47_11940	0.85	+0.2
2,527,935	+		IAI47_11940	0.85	-0.5
2,527,935	+		IAI47_11940	0.85	-1.6
2,527,936	-		IAI47_11940	0.85	-0.3
2,527,937	+		IAI47_11940	0.85	+0.2
2,527,938	-		IAI47_11940	0.85	-0.3
2,527,999	-				+0.4
2,528,082	+				-0.3
2,528,083	-				+0.7
2,528,107	-				-0.3
2,528,176	+				+0.3
2,528,177	-				+0.3
2,528,180	+				+0.7
2,528,180	+				+0.9
2,528,181	-				+0.0
2,528,181	-				-1.4
2,528,244	+				-0.1
2,528,244	+				+0.3
2,528,276	+				+0.7
2,528,276	+				+0.2
2,528,277	+				-0.9
2,528,277	-				-1.4
2,528,277	-				-0.2
2,528,277	-				+1.1
2,528,277	-				+0.7
2,528,280	+				-1.3
2,528,280	+				-1.1
2,528,280	+				-1.7
2,528,280	+				+0.7
2,528,280	+				-0.6
2,528,280	+				+3.2
2,528,280	+				+0.1
2,528,280	+				-0.8
2,528,280	+				-0.7
2,528,281	-				+0.8
2,528,281	-				+0.1
2,528,281	-				+0.1
2,528,281	-				+0.2
2,528,281	-				-0.4
2,528,282	+				-0.7
2,528,282	+				-1.0
2,528,282	+				-1.1
2,528,283	-				-0.1
2,528,344	-		IAI47_11945	0.13	+2.3
2,528,344	-		IAI47_11945	0.13	-1.3
2,528,398	+		IAI47_11945	0.18	-1.0
2,528,454	-		IAI47_11945	0.22	+1.3
2,528,454	-		IAI47_11945	0.22	-0.5
2,528,454	-		IAI47_11945	0.22	-1.0
2,528,460	+		IAI47_11945	0.23	-1.2
2,528,461	-		IAI47_11945	0.23	-0.6
2,528,538	+		IAI47_11945	0.29	-0.3
2,528,577	+		IAI47_11945	0.32	+0.1
2,528,577	+		IAI47_11945	0.32	-0.1
2,528,577	+		IAI47_11945	0.32	-0.4
2,528,577	+		IAI47_11945	0.32	-0.3
2,528,578	-		IAI47_11945	0.32	+0.7
2,528,579	+		IAI47_11945	0.33	+0.7
2,528,579	+		IAI47_11945	0.33	-1.6
2,528,579	+		IAI47_11945	0.33	-1.0
2,528,579	+		IAI47_11945	0.33	+1.2
2,528,579	+		IAI47_11945	0.33	-0.4
2,528,580	-		IAI47_11945	0.33	-0.1
2,528,580	-		IAI47_11945	0.33	-0.8
2,528,580	-		IAI47_11945	0.33	-0.3
2,528,580	-		IAI47_11945	0.33	-0.7
2,528,580	-		IAI47_11945	0.33	-0.4
2,528,580	-		IAI47_11945	0.33	-0.4
2,528,580	-		IAI47_11945	0.33	+0.3
2,528,580	-		IAI47_11945	0.33	+0.5
2,528,580	-		IAI47_11945	0.33	+0.3
2,528,580	-		IAI47_11945	0.33	-2.1
2,528,599	+		IAI47_11945	0.34	-1.0
2,528,599	+		IAI47_11945	0.34	-0.5
2,528,599	+		IAI47_11945	0.34	+0.3
2,528,600	-		IAI47_11945	0.34	-0.0
2,528,600	-		IAI47_11945	0.34	-0.8
2,528,600	-		IAI47_11945	0.34	+0.3
2,528,600	-		IAI47_11945	0.34	+0.2
2,528,600	-		IAI47_11945	0.34	-1.0
2,528,627	+		IAI47_11945	0.36	-2.3
2,528,627	+		IAI47_11945	0.36	-0.1
2,528,627	+		IAI47_11945	0.36	+0.3
2,528,627	+		IAI47_11945	0.36	+0.1
2,528,628	-		IAI47_11945	0.37	-0.5
2,528,628	-		IAI47_11945	0.37	-2.1
2,528,628	-		IAI47_11945	0.37	+0.9
2,528,628	-		IAI47_11945	0.37	+0.3
2,528,628	-		IAI47_11945	0.37	-1.3
2,528,628	-		IAI47_11945	0.37	-0.8
2,528,628	-		IAI47_11945	0.37	-2.3
2,528,628	-		IAI47_11945	0.37	+0.3
2,528,628	-		IAI47_11945	0.37	-0.8
2,528,639	+		IAI47_11945	0.37	-0.8
2,528,640	-		IAI47_11945	0.37	+0.4
2,528,640	-		IAI47_11945	0.37	-0.8
2,528,650	-		IAI47_11945	0.38	-0.3
2,528,650	-		IAI47_11945	0.38	-1.1
2,528,650	-		IAI47_11945	0.38	-0.3
2,528,650	-		IAI47_11945	0.38	+0.4
2,528,651	+		IAI47_11945	0.38	-0.3
2,528,652	-		IAI47_11945	0.38	+0.7
2,528,652	-		IAI47_11945	0.38	-0.9
2,528,652	-		IAI47_11945	0.38	-2.4
2,528,652	-		IAI47_11945	0.38	-0.5
2,528,748	+		IAI47_11945	0.46	+0.3
2,528,749	-		IAI47_11945	0.46	-1.8
2,528,749	-		IAI47_11945	0.46	-1.8
2,528,795	+		IAI47_11945	0.50	-0.3
2,528,831	+		IAI47_11945	0.53	+0.7
2,528,831	+		IAI47_11945	0.53	+0.7
2,528,831	+		IAI47_11945	0.53	-1.3
2,528,832	-		IAI47_11945	0.53	-0.1
2,528,832	-		IAI47_11945	0.53	+0.7
2,528,832	-		IAI47_11945	0.53	+0.2
2,529,021	+		IAI47_11945	0.68	-0.8
2,529,021	+		IAI47_11945	0.68	-1.1
2,529,022	-		IAI47_11945	0.69	-2.4
2,529,050	-		IAI47_11945	0.71	-0.4
2,529,063	+		IAI47_11945	0.72	-0.5
2,529,063	+		IAI47_11945	0.72	-0.3
2,529,064	-		IAI47_11945	0.72	+0.2
2,529,090	+		IAI47_11945	0.74	+1.4