Strain Fitness in Pantoea sp. MT58 around IAI47_11830

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,508,520	+		IAI47_11820	0.85	-1.2
2,508,599	+				+2.3
2,508,599	+				+1.0
2,508,599	+				-0.3
2,508,599	+				-1.3
2,508,600	-				-1.1
2,508,600	-				+0.5
2,508,600	-				-0.4
2,508,600	-				+0.4
2,508,604	+				+0.6
2,508,604	+				+0.7
2,508,604	+				-2.1
2,508,605	-				+0.5
2,508,623	+				-0.1
2,508,639	+				-0.8
2,508,639	+				-0.8
2,508,639	+				+0.5
2,508,640	-				+0.8
2,508,659	+				-0.1
2,508,660	-				-0.8
2,508,660	-				-2.1
2,508,680	+				+0.1
2,508,680	+				-1.3
2,508,680	+				+2.3
2,508,680	+				+0.4
2,508,681	-				-0.3
2,508,681	-				-0.3
2,508,681	-				+0.5
2,508,681	-				+0.4
2,508,685	+				-1.6
2,508,685	+				-0.6
2,508,685	+				+0.2
2,508,686	-				+0.0
2,508,710	-				-0.6
2,508,745	-		IAI47_11825	0.12	+1.7
2,508,754	+		IAI47_11825	0.13	+1.0
2,508,754	+		IAI47_11825	0.13	+0.9
2,508,775	+		IAI47_11825	0.16	-0.7
2,508,779	+		IAI47_11825	0.17	+1.1
2,508,779	+		IAI47_11825	0.17	+0.4
2,508,779	+		IAI47_11825	0.17	-0.7
2,508,779	+		IAI47_11825	0.17	+1.4
2,508,779	+		IAI47_11825	0.17	-0.6
2,508,779	+		IAI47_11825	0.17	+0.3
2,508,779	+		IAI47_11825	0.17	-1.3
2,508,779	+		IAI47_11825	0.17	-0.8
2,508,780	-		IAI47_11825	0.17	-0.1
2,508,780	-		IAI47_11825	0.17	+0.4
2,508,780	-		IAI47_11825	0.17	-2.4
2,508,780	-		IAI47_11825	0.17	+0.0
2,508,780	-		IAI47_11825	0.17	+0.4
2,508,780	-		IAI47_11825	0.17	+1.7
2,508,847	+		IAI47_11825	0.28	+2.7
2,508,848	-		IAI47_11825	0.28	-0.8
2,508,865	+		IAI47_11825	0.31	+0.6
2,508,866	-		IAI47_11825	0.31	-0.3
2,508,866	-		IAI47_11825	0.31	+0.7
2,508,917	+		IAI47_11825	0.39	-0.3
2,508,918	-		IAI47_11825	0.39	-0.1
2,508,918	-		IAI47_11825	0.39	+2.0
2,508,920	-		IAI47_11825	0.39	-1.3
2,508,926	-		IAI47_11825	0.40	-0.8
2,508,926	-		IAI47_11825	0.40	-1.3
2,508,926	-		IAI47_11825	0.40	-0.0
2,508,926	-		IAI47_11825	0.40	-0.8
2,508,926	-		IAI47_11825	0.40	-0.1
2,508,926	-		IAI47_11825	0.40	-2.1
2,508,926	-		IAI47_11825	0.40	-0.3
2,508,926	-		IAI47_11825	0.40	-2.3
2,508,926	-		IAI47_11825	0.40	+0.9
2,508,926	-		IAI47_11825	0.40	-1.3
2,508,944	+		IAI47_11825	0.43	-0.4
2,508,945	-		IAI47_11825	0.43	+1.0
2,509,006	+		IAI47_11825	0.53	+0.7
2,509,006	+		IAI47_11825	0.53	+0.5
2,509,034	+		IAI47_11825	0.57	-1.3
2,509,034	+		IAI47_11825	0.57	+1.0
2,509,035	-		IAI47_11825	0.58	-0.8
2,509,035	-		IAI47_11825	0.58	+0.1
2,509,058	+		IAI47_11825	0.61	-0.3
2,509,058	+		IAI47_11825	0.61	+0.6
2,509,059	-		IAI47_11825	0.61	+0.3
2,509,059	-		IAI47_11825	0.61	+0.2
2,509,103	+		IAI47_11825	0.68	-0.3
2,509,103	+		IAI47_11825	0.68	-0.3
2,509,103	+		IAI47_11825	0.68	-0.3
2,509,104	-		IAI47_11825	0.69	+0.7
2,509,104	-		IAI47_11825	0.69	-0.8
2,509,135	+		IAI47_11825	0.73	+0.7
2,509,136	-		IAI47_11825	0.74	+1.5
2,509,203	+		IAI47_11825	0.84	-0.0
2,509,204	-		IAI47_11825	0.84	+0.6
2,509,204	-		IAI47_11825	0.84	+0.2
2,509,204	-		IAI47_11825	0.84	+0.4
2,509,204	-		IAI47_11825	0.84	-0.3
2,509,223	+		IAI47_11825	0.87	-0.3
2,509,223	+		IAI47_11825	0.87	-1.4
2,509,267	-				-0.3
2,509,278	+				-1.1
2,509,278	+				-1.7
2,509,279	-				+0.3
2,509,279	-				-0.5
2,509,280	+				+0.7
2,509,280	+				+0.3
2,509,280	+				+0.2
2,509,280	+				-0.3
2,509,280	+				-0.6
2,509,280	+				-1.0
2,509,280	+				+1.1
2,509,281	-				-0.3
2,509,281	-				+0.7
2,509,281	-				+1.3
2,509,281	-				+0.0
2,509,281	-				+1.4
2,509,314	+				+0.3
2,509,314	+				+0.5
2,509,314	+				+0.2
2,509,314	+				+0.1
2,509,315	-				+0.3
2,509,333	+				-0.6
2,509,333	+				+1.0
2,509,333	+				-0.8
2,509,333	+				+0.2
2,509,334	-				-0.1
2,509,334	-				-1.1
2,509,334	-				-1.1
2,509,334	-				+1.8
2,509,334	-				-1.4
2,509,334	-				+0.1
2,509,334	-				-0.3
2,509,339	-				+1.3
2,509,339	-				-1.6
2,509,339	-				+0.5
2,509,339	-				-0.1
2,509,370	+				-1.4
2,509,370	+				+1.0
2,509,371	-				+0.4
2,509,371	-				+1.2
2,509,375	+				+0.2
2,509,375	+				+0.6
2,509,376	-				+0.3
2,509,384	+				-1.3
2,509,398	+				+0.0
2,509,398	+				-1.3
2,509,438	-				+0.2
2,509,462	+				+0.4
2,509,463	-				-0.8
2,509,463	-				-0.8
2,509,489	+				-1.6
2,509,489	+				-1.8
2,509,489	+				-1.0
2,509,490	-				-1.6
2,509,490	-				-1.7
2,509,490	-				-0.3
2,509,490	-				-1.8
2,509,490	-				-1.6
2,509,538	-				-3.3
2,509,570	-		IAI47_11830	0.11	-0.9
2,509,639	+		IAI47_11830	0.19	-1.6
2,509,733	+		IAI47_11830	0.29	-1.8
2,509,733	+		IAI47_11830	0.29	-1.3
2,509,734	-		IAI47_11830	0.29	-2.0
2,509,734	-		IAI47_11830	0.29	-2.6
2,509,734	-		IAI47_11830	0.29	-0.8
2,509,837	+		IAI47_11830	0.40	-0.4
2,509,837	+		IAI47_11830	0.40	-1.8
2,509,837	+		IAI47_11830	0.40	-1.1
2,509,838	-		IAI47_11830	0.40	-0.9
2,509,884	+		IAI47_11830	0.45	-0.1
2,509,884	+		IAI47_11830	0.45	-2.5
2,509,885	-		IAI47_11830	0.45	-1.8
2,509,885	-		IAI47_11830	0.45	-2.4
2,509,920	+		IAI47_11830	0.49	-2.6
2,509,920	+		IAI47_11830	0.49	-1.9
2,509,920	+		IAI47_11830	0.49	-1.8
2,509,921	-		IAI47_11830	0.49	-0.7
2,509,921	-		IAI47_11830	0.49	-0.8
2,509,921	-		IAI47_11830	0.49	-1.4
2,509,921	-		IAI47_11830	0.49	-0.8
2,509,930	+		IAI47_11830	0.50	-1.9
2,509,936	-		IAI47_11830	0.51	+0.7
2,509,936	-		IAI47_11830	0.51	-1.3
2,509,936	-		IAI47_11830	0.51	-1.6
2,509,984	+		IAI47_11830	0.56	-2.3
2,509,984	+		IAI47_11830	0.56	-0.5
2,509,985	-		IAI47_11830	0.56	-2.1
2,509,985	-		IAI47_11830	0.56	-0.7
2,510,195	+		IAI47_11830	0.79	-0.9
2,510,196	-		IAI47_11830	0.79	-1.6
2,510,196	-		IAI47_11830	0.79	-0.8
2,510,209	+		IAI47_11830	0.80	-1.8
2,510,329	-				-0.9
2,510,355	+				+0.7
2,510,356	-				+0.2
2,510,387	+				-0.3
2,510,387	+				-1.3
2,510,387	+				-0.3
2,510,388	-				+0.5
2,510,388	-				-0.0
2,510,388	-				-1.2
2,510,388	-				+0.5
2,510,392	+				-0.5
2,510,424	+				-0.7
2,510,424	+				-0.0
2,510,425	-				+0.7
2,510,498	+		IAI47_11835	0.13	+0.2
2,510,498	+		IAI47_11835	0.13	+0.3
2,510,499	-		IAI47_11835	0.13	+1.7
2,510,539	+		IAI47_11835	0.19	+0.2
2,510,540	-		IAI47_11835	0.19	-1.2
2,510,540	-		IAI47_11835	0.19	-0.8
2,510,595	+		IAI47_11835	0.28	+0.3
2,510,595	+		IAI47_11835	0.28	+0.4
2,510,595	+		IAI47_11835	0.28	+0.1
2,510,595	+		IAI47_11835	0.28	-1.1
2,510,596	-		IAI47_11835	0.28	-1.0
2,510,596	-		IAI47_11835	0.28	+0.3
2,510,651	+		IAI47_11835	0.36	+0.9
2,510,651	+		IAI47_11835	0.36	-0.8
2,510,652	-		IAI47_11835	0.36	-0.4
2,510,654	+		IAI47_11835	0.37	+0.3
2,510,654	+		IAI47_11835	0.37	+0.3
2,510,655	-		IAI47_11835	0.37	-0.5
2,510,672	+		IAI47_11835	0.39	+1.5
2,510,693	-		IAI47_11835	0.42	+0.7
2,510,693	-		IAI47_11835	0.42	-0.2
2,510,758	+		IAI47_11835	0.52	+0.6
2,510,759	-		IAI47_11835	0.52	-0.1
2,510,759	-		IAI47_11835	0.52	+0.9
2,510,796	+		IAI47_11835	0.58	+0.3
2,510,796	+		IAI47_11835	0.58	+0.2
2,510,796	+		IAI47_11835	0.58	-0.8
2,510,796	+		IAI47_11835	0.58	-0.5
2,510,796	+		IAI47_11835	0.58	-0.1
2,510,797	-		IAI47_11835	0.58	-0.6
2,510,797	-		IAI47_11835	0.58	+0.2
2,510,797	-		IAI47_11835	0.58	-0.1
2,510,802	+		IAI47_11835	0.59	-0.7
2,510,802	+		IAI47_11835	0.59	-0.4
2,510,802	+		IAI47_11835	0.59	-0.7
2,510,802	+		IAI47_11835	0.59	-0.3
2,510,803	-		IAI47_11835	0.59	-1.0
2,510,803	-		IAI47_11835	0.59	+0.3
2,510,803	-		IAI47_11835	0.59	+0.2
2,510,804	+		IAI47_11835	0.59	+2.3
2,510,804	+		IAI47_11835	0.59	+1.3
2,510,804	+		IAI47_11835	0.59	+0.2
2,510,805	-		IAI47_11835	0.59	-1.4
2,510,805	-		IAI47_11835	0.59	+1.5
2,510,805	-		IAI47_11835	0.59	+0.7
2,510,805	-		IAI47_11835	0.59	+0.2
2,510,805	-		IAI47_11835	0.59	+0.4
2,510,805	-		IAI47_11835	0.59	-0.1
2,510,805	-		IAI47_11835	0.59	+0.4
2,510,826	+		IAI47_11835	0.62	+0.4
2,510,827	-		IAI47_11835	0.63	+1.6
2,510,827	-		IAI47_11835	0.63	-1.3
2,510,827	-		IAI47_11835	0.63	-0.8
2,510,827	-		IAI47_11835	0.63	-0.6
2,510,827	-		IAI47_11835	0.63	+0.6
2,510,894	+		IAI47_11835	0.73	+0.3
2,510,894	+		IAI47_11835	0.73	+0.5
2,510,894	+		IAI47_11835	0.73	+0.4
2,510,895	-		IAI47_11835	0.73	-1.1
2,510,895	-		IAI47_11835	0.73	-0.5
2,510,895	-		IAI47_11835	0.73	+0.5
2,510,895	-		IAI47_11835	0.73	-0.8
2,510,895	-		IAI47_11835	0.73	-1.8
2,510,966	+		IAI47_11835	0.84	-1.4
2,510,966	+		IAI47_11835	0.84	+1.7
2,510,967	-		IAI47_11835	0.84	+0.7
2,510,967	-		IAI47_11835	0.84	-1.3
2,511,067	-				+0.7
2,511,076	+				-0.1
2,511,076	+				+0.7
2,511,077	-				+2.4
2,511,094	+				+0.8
2,511,094	+				-0.7
2,511,118	+		IAI47_11840	0.10	-0.1
2,511,118	+		IAI47_11840	0.10	-0.4
2,511,118	+		IAI47_11840	0.10	+1.3
2,511,119	-		IAI47_11840	0.11	-1.6
2,511,119	-		IAI47_11840	0.11	+1.0
2,511,119	-		IAI47_11840	0.11	-0.5
2,511,119	-		IAI47_11840	0.11	-0.8
2,511,119	-		IAI47_11840	0.11	-0.8
2,511,122	+		IAI47_11840	0.11	+0.5
2,511,122	+		IAI47_11840	0.11	-0.9
2,511,143	+		IAI47_11840	0.16	-0.8
2,511,144	-		IAI47_11840	0.17	+1.1
2,511,145	+		IAI47_11840	0.17	+1.3
2,511,145	+		IAI47_11840	0.17	+0.8
2,511,296	+		IAI47_11840	0.53	+1.1
2,511,296	+		IAI47_11840	0.53	-0.7
2,511,296	+		IAI47_11840	0.53	+0.2
2,511,297	-		IAI47_11840	0.54	-0.8
2,511,297	-		IAI47_11840	0.54	-0.7
2,511,369	-		IAI47_11840	0.71	+0.7