Strain Fitness in Pantoea sp. MT58 around IAI47_11480

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,428,997	-				-0.1
2,429,044	+				-0.2
2,429,071	-		IAI47_11470	0.15	+0.2
2,429,084	-		IAI47_11470	0.18	-0.9
2,429,191	-		IAI47_11470	0.46	+1.4
2,429,241	+		IAI47_11470	0.59	-0.0
2,429,242	-		IAI47_11470	0.60	+0.3
2,429,242	-		IAI47_11470	0.60	+0.7
2,429,253	+		IAI47_11470	0.63	-0.3
2,429,254	-		IAI47_11470	0.63	+1.3
2,429,270	+		IAI47_11470	0.67	-0.7
2,429,270	+		IAI47_11470	0.67	-0.6
2,429,271	-		IAI47_11470	0.67	-0.8
2,429,318	+		IAI47_11470	0.80	-0.8
2,429,319	-		IAI47_11470	0.80	+0.7
2,429,326	-		IAI47_11470	0.82	+1.7
2,429,382	+				-1.2
2,429,403	+				+0.6
2,429,403	+				+1.3
2,429,417	-				-0.5
2,429,418	+				-1.0
2,429,418	+				-0.3
2,429,419	-				-0.1
2,429,438	-				+0.2
2,429,451	+				+1.0
2,429,454	-				+1.8
2,429,458	-				+0.4
2,429,483	-				+0.9
2,429,488	-				+0.7
2,429,488	-				-0.1
2,429,513	-				-1.3
2,429,603	-				+0.7
2,429,661	-		IAI47_11475	0.26	-0.8
2,429,717	-		IAI47_11475	0.43	+0.4
2,429,877	-				+0.7
2,429,970	-				-0.8
2,429,997	-				-1.7
2,430,096	-		IAI47_11480	0.29	-1.0
2,430,177	+		IAI47_11480	0.51	-0.6
2,430,228	-		IAI47_11480	0.66	-1.8
2,430,232	-		IAI47_11480	0.67	-0.9
2,430,303	+		IAI47_11480	0.87	-0.6
2,430,331	-				+0.3
2,430,446	-				-0.8
2,430,872	-				+0.5
2,430,873	+				+0.7
2,430,874	+				+0.2
2,430,896	-				-0.6
2,431,001	+				-1.1
2,431,002	-				-1.1
2,431,050	-				-0.4
2,431,081	+				+0.5
2,431,082	-				-0.8
2,431,118	+				+0.3
2,431,118	+				-0.7
2,431,123	+				+0.0
2,431,162	+				-0.7
2,431,179	+				+1.5
2,431,179	+				-0.6
2,431,214	-				-0.3
2,431,220	+				-1.3
2,431,244	+				+1.0
2,431,264	+				+0.3
2,431,264	+				+1.5
2,431,267	+				+0.2
2,431,270	+				-2.1
2,431,273	+				+0.5
2,431,300	+				-1.3
2,431,300	+				-1.4
2,431,300	+				+0.9
2,431,348	+				-0.0