Strain Fitness in Pantoea sp. MT58 around IAI47_11310

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,388,261	+				+0.9
2,388,262	-				+1.4
2,388,285	+				+0.1
2,388,285	+				-0.3
2,388,286	-				+0.4
2,388,312	-				+0.7
2,388,312	-				-0.7
2,388,312	-				-0.3
2,388,327	-				-0.3
2,388,345	-				-1.0
2,388,374	+				-1.0
2,388,374	+				+0.0
2,388,374	+				+0.8
2,388,412	-				+0.7
2,388,485	-				-1.1
2,388,485	-				+0.2
2,388,490	-				-0.8
2,388,490	-				-0.8
2,388,490	-				-1.8
2,388,490	-				-0.7
2,388,516	+				+2.1
2,389,109	+				-1.3
2,389,137	+				+0.5
2,389,137	+				+0.6
2,389,137	+				+0.2
2,389,137	+				-1.8
2,389,139	+				+0.2
2,389,139	+				+0.6
2,389,139	+				+0.0
2,389,140	-				+0.0
2,389,140	-				+0.5
2,389,140	-				-0.1
2,389,140	-				+0.8
2,389,140	-				+0.2
2,389,202	+				-0.3
2,389,202	+				+1.2
2,389,202	+				+0.2
2,389,203	-				+0.7
2,389,204	+				+0.6
2,389,204	+				+0.6
2,389,204	+				-1.4
2,389,262	-				+0.2
2,389,393	+		IAI47_11310	0.16	+0.7
2,389,394	-		IAI47_11310	0.16	-0.6
2,389,417	+		IAI47_11310	0.18	-1.1
2,389,571	-		IAI47_11310	0.32	-0.8
2,389,591	+		IAI47_11310	0.34	-1.6
2,389,796	+		IAI47_11310	0.53	-1.6
2,389,829	+		IAI47_11310	0.56	-1.2
2,389,829	+		IAI47_11310	0.56	-0.3
2,389,829	+		IAI47_11310	0.56	-0.1
2,389,829	+		IAI47_11310	0.56	-0.6
2,389,829	+				+0.7
2,389,829	+		IAI47_11310	0.56	+0.4
2,389,830	-		IAI47_11310	0.56	+2.1
2,389,830	-		IAI47_11310	0.56	-1.6
2,389,830	-		IAI47_11310	0.56	-1.4
2,389,830	-		IAI47_11310	0.56	+0.7
2,390,063	+		IAI47_11310	0.77	-1.0
2,390,063	+		IAI47_11310	0.77	+0.7
2,390,063	+		IAI47_11310	0.77	+0.2
2,390,064	-		IAI47_11310	0.77	-0.8
2,390,329	+				+1.7
2,390,329	+				+0.1
2,390,329	+				-1.0
2,390,330	-				+0.1
2,390,330	-				-0.4
2,390,330	-				+0.5
2,390,340	+				-0.3
2,390,359	+				+0.3
2,390,359	+				+0.5
2,390,367	-				+0.2
2,390,373	+				+0.0
2,390,373	+				-0.9
2,390,374	-				-0.1
2,390,374	-				-0.8
2,390,374	-				+1.2
2,390,374	-				+0.1
2,390,393	-				-0.0
2,390,406	+				+1.0
2,390,406	+				-0.2
2,390,407	-				+0.6
2,390,407	-				+0.1
2,390,407	-				+0.4
2,390,407	-				-0.3
2,390,407	-				+0.7
2,390,407	-				+0.2
2,390,407	-				-1.5
2,390,448	+				+1.1
2,390,449	-				-1.0
2,390,465	-				+0.7
2,390,504	+				-1.3
2,390,504	+				+0.2
2,390,504	+				+0.2
2,390,505	-				+1.4
2,390,505	-				-3.0
2,390,505	-				-0.4
2,390,505	-				-0.3
2,390,505	-				+0.1
2,390,505	-				-1.1
2,390,511	-				+0.5
2,390,571	-				+1.4
2,390,571	-				+0.7
2,390,627	+				-0.5
2,390,627	+				-0.7
2,390,628	-				+1.6
2,390,628	-				+0.0
2,390,628	-				-1.8
2,390,628	-				-0.0
2,390,628	-				-0.8
2,390,628	-				+0.1
2,390,703	+		IAI47_11315	0.16	-0.1
2,390,704	-		IAI47_11315	0.16	-0.3
2,390,718	+		IAI47_11315	0.17	-0.4
2,390,718	+		IAI47_11315	0.17	-0.1
2,390,718	+		IAI47_11315	0.17	+0.4
2,390,719	-		IAI47_11315	0.18	-0.7
2,390,719	-		IAI47_11315	0.18	+0.2
2,390,719	-		IAI47_11315	0.18	+0.3
2,390,786	+		IAI47_11315	0.25	+0.0
2,390,786	+		IAI47_11315	0.25	+0.7
2,390,786	+		IAI47_11315	0.25	-0.7
2,390,786	+		IAI47_11315	0.25	-0.6
2,390,786	+		IAI47_11315	0.25	+1.7
2,390,787	-		IAI47_11315	0.25	-0.9
2,390,787	-		IAI47_11315	0.25	-0.8
2,390,787	-		IAI47_11315	0.25	-0.6
2,390,787	-		IAI47_11315	0.25	+1.9
2,390,787	-		IAI47_11315	0.25	+1.2
2,390,803	+		IAI47_11315	0.27	+0.3
2,390,811	-		IAI47_11315	0.28	+0.2
2,390,844	-		IAI47_11315	0.31	-1.3
2,390,865	+		IAI47_11315	0.34	+1.3
2,390,865	+		IAI47_11315	0.34	-1.8
2,390,866	-		IAI47_11315	0.34	+0.3
2,390,866	-		IAI47_11315	0.34	-0.8
2,390,866	-		IAI47_11315	0.34	-0.6
2,390,901	+		IAI47_11315	0.38	+0.3
2,390,906	+		IAI47_11315	0.38	+0.7
2,390,906	+		IAI47_11315	0.38	+0.2
2,390,907	-		IAI47_11315	0.38	+0.4
2,390,962	-		IAI47_11315	0.44	-0.3
2,391,072	+		IAI47_11315	0.56	-0.9
2,391,072	+		IAI47_11315	0.56	+0.3
2,391,073	-		IAI47_11315	0.57	+0.3
2,391,073	-		IAI47_11315	0.57	+1.0
2,391,073	-		IAI47_11315	0.57	+1.2
2,391,073	-		IAI47_11315	0.57	+1.7
2,391,073	-		IAI47_11315	0.57	-0.1
2,391,077	+		IAI47_11315	0.57	-0.3
2,391,213	+		IAI47_11315	0.72	+0.4
2,391,213	+		IAI47_11315	0.72	-0.7
2,391,213	+		IAI47_11315	0.72	+0.2
2,391,213	+		IAI47_11315	0.72	+0.6
2,391,213	+		IAI47_11315	0.72	+0.9
2,391,214	-		IAI47_11315	0.72	+0.3
2,391,214	-		IAI47_11315	0.72	-0.4
2,391,214	-		IAI47_11315	0.72	+0.6
2,391,214	-		IAI47_11315	0.72	-0.3
2,391,233	+		IAI47_11315	0.74	+0.2
2,391,264	+		IAI47_11315	0.78	-0.1
2,391,265	-		IAI47_11315	0.78	-0.5
2,391,265	-		IAI47_11315	0.78	-1.0