Strain Fitness in Pantoea sp. MT58 around IAI47_10610

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,241,461	-				+0.7
2,241,461	-				+0.5
2,241,461	-				-0.9
2,241,587	-				-2.1
2,241,595	-				-1.0
2,241,632	+				-2.5
2,241,644	+				-0.5
2,241,725	+				-0.5
2,241,726	-				+1.6
2,241,736	+				-0.3
2,241,737	-				+0.1
2,241,737	-				-0.3
2,241,821	-				-0.3
2,241,849	+				-0.5
2,241,849	+				-0.5
2,241,850	-				-0.1
2,241,850	-				-0.6
2,241,880	-				-0.0
2,241,880	-				-0.6
2,241,880	-				-0.9
2,241,901	+		IAI47_10605	0.15	-0.7
2,241,906	+		IAI47_10605	0.17	-1.6
2,241,996	+		IAI47_10605	0.52	+0.0
2,241,996	+		IAI47_10605	0.52	+1.3
2,241,997	-		IAI47_10605	0.52	-0.3
2,242,046	+		IAI47_10605	0.71	-0.9
2,242,046	+		IAI47_10605	0.71	-0.6
2,242,046	+		IAI47_10605	0.71	-1.3
2,242,046	+		IAI47_10605	0.71	-1.4
2,242,047	-		IAI47_10605	0.72	-1.3
2,242,047	-		IAI47_10605	0.72	+0.7
2,242,047	-		IAI47_10605	0.72	-1.4
2,242,047	-		IAI47_10605	0.72	-0.6
2,242,050	+		IAI47_10605	0.73	-1.3
2,242,051	-		IAI47_10605	0.73	+0.2
2,242,051	-		IAI47_10605	0.73	+0.6
2,242,051	-		IAI47_10605	0.73	-0.1
2,242,051	-		IAI47_10605	0.73	+0.2
2,242,051	-		IAI47_10605	0.73	-0.8
2,242,051	-		IAI47_10605	0.73	+0.1
2,242,059	+		IAI47_10605	0.76	-1.4
2,242,059	+		IAI47_10605	0.76	+1.3
2,242,059	+		IAI47_10605	0.76	+0.2
2,242,059	+		IAI47_10605	0.76	+0.1
2,242,063	+		IAI47_10605	0.78	+0.5
2,242,063	+		IAI47_10605	0.78	-0.4
2,242,125	+				-1.2
2,242,133	+				+0.2
2,242,133	+				+0.5
2,242,133	+				-0.9
2,242,133	+				-0.3
2,242,133	+				-0.1
2,242,133	+				-0.1
2,242,133	+				-1.9
2,242,133	+				-1.6
2,242,134	-				+0.3
2,242,136	-				-1.6
2,242,136	-				+0.3
2,242,160	+				-0.5
2,242,179	-				+0.2
2,242,193	+				-1.4
2,242,194	-				-0.1
2,242,194	-				-0.0
2,242,214	+				+0.5
2,242,214	+				+1.5
2,242,214	+				-0.4
2,242,214	+				+0.6
2,242,214	+				+0.4
2,242,214	+				+0.3
2,242,215	-				+1.2
2,242,215	-				+0.0
2,242,215	-				+0.3
2,242,215	-				-0.2
2,242,215	-				-0.2
2,242,236	+				-0.8
2,242,237	-				+0.3
2,242,237	-				-0.5
2,242,253	+				+0.1
2,242,260	+				-0.4
2,242,260	+				-0.6
2,242,261	-				+2.3
2,242,261	-				-0.0
2,242,261	-				-0.1
2,242,261	-				-1.0
2,242,262	+				-0.5
2,242,262	+				-0.9
2,242,262	+				-0.8
2,242,262	+				+0.1
2,242,262	+				+1.3
2,242,262	+				+0.1
2,242,263	-				+0.9
2,242,263	-				+0.6
2,242,263	-				-1.5
2,242,263	-				-0.4
2,242,263	-				+0.1
2,242,263	-				-2.1
2,242,279	+				-1.1
2,242,280	-				+0.3
2,242,280	-				-0.1
2,242,302	-				-0.0
2,242,332	+				+0.2
2,242,344	-				+0.6
2,242,370	+				-0.5
2,242,371	-				+1.3
2,242,371	-				-0.0
2,242,394	+				-0.1
2,242,394	+				-0.1
2,242,394	+				-0.1
2,242,394	+				-0.4
2,242,395	-				+0.5
2,242,395	-				+0.1
2,242,398	+				+0.4
2,242,398	+				-1.3
2,242,398	+				-1.0
2,242,398	+				-0.4
2,242,398	+				+0.2
2,242,398	+				+0.1
2,242,398	+				+2.0
2,242,399	-				+0.7
2,242,399	-				-0.1
2,242,399	-				-0.3
2,242,399	-				+0.6
2,242,399	-				-0.8
2,242,399	-				-1.0
2,242,399	-				-0.1
2,242,399	-				+1.3
2,242,399	-				-0.5
2,242,439	+				+1.3
2,242,440	-				-1.3
2,242,472	+				+0.0
2,242,473	-				+0.4
2,242,473	-				-0.2
2,242,511	+		IAI47_10610	0.13	-0.1
2,242,512	-		IAI47_10610	0.13	+0.2
2,242,512	-		IAI47_10610	0.13	-0.9
2,242,606	-		IAI47_10610	0.24	+0.3
2,242,606	-		IAI47_10610	0.24	-0.6
2,242,621	+		IAI47_10610	0.26	-0.9
2,242,622	-		IAI47_10610	0.26	+0.7
2,242,692	+		IAI47_10610	0.35	-0.1
2,242,725	+		IAI47_10610	0.38	+0.1
2,242,725	+		IAI47_10610	0.38	+1.0
2,242,757	+		IAI47_10610	0.42	+0.1
2,242,795	+		IAI47_10610	0.47	+1.0
2,242,795	+		IAI47_10610	0.47	-0.0
2,242,795	+		IAI47_10610	0.47	+0.4
2,242,795	+		IAI47_10610	0.47	+0.9
2,242,796	-		IAI47_10610	0.47	+0.0
2,242,796	-		IAI47_10610	0.47	-0.4
2,242,796	-		IAI47_10610	0.47	+3.8
2,242,822	-		IAI47_10610	0.50	-0.1
2,242,822	-		IAI47_10610	0.50	-0.3
2,242,830	+		IAI47_10610	0.51	+0.5
2,242,831	-		IAI47_10610	0.51	-0.1
2,242,876	+		IAI47_10610	0.56	+1.1
2,242,876	+		IAI47_10610	0.56	+0.3
2,242,876	+		IAI47_10610	0.56	+0.1
2,242,877	-		IAI47_10610	0.56	-0.3
2,242,877	-		IAI47_10610	0.56	+1.5
2,243,047	+		IAI47_10610	0.76	+0.3
2,243,048	-		IAI47_10610	0.76	+0.7
2,243,048	-		IAI47_10610	0.76	+0.7
2,243,048	-		IAI47_10610	0.76	-2.6
2,243,048	-		IAI47_10610	0.76	-0.6
2,243,048	-		IAI47_10610	0.76	+0.4
2,243,050	+		IAI47_10610	0.77	+0.3
2,243,050	+		IAI47_10610	0.77	-0.0
2,243,050	+		IAI47_10610	0.77	+0.4
2,243,050	+		IAI47_10610	0.77	-0.1
2,243,051	-		IAI47_10610	0.77	+1.6
2,243,051	-		IAI47_10610	0.77	-0.3
2,243,051	-		IAI47_10610	0.77	-1.9
2,243,061	+		IAI47_10610	0.78	+0.1
2,243,061	+		IAI47_10610	0.78	-0.3
2,243,113	+		IAI47_10610	0.84	-0.7
2,243,113	+		IAI47_10610	0.84	+0.0
2,243,113	+		IAI47_10610	0.84	-0.1
2,243,113	+		IAI47_10610	0.84	+0.6
2,243,114	-		IAI47_10610	0.84	+1.1
2,243,114	-		IAI47_10610	0.84	+0.1
2,243,114	-		IAI47_10610	0.84	-0.3
2,243,114	-		IAI47_10610	0.84	+0.5
2,243,154	+		IAI47_10610	0.89	-0.1
2,243,245	+				-0.2
2,243,245	+				+0.1
2,243,246	-				-1.1
2,243,295	+				-0.4
2,243,372	+				-0.1
2,243,372	+				+0.1
2,243,415	+		IAI47_10615	0.12	+0.1
2,243,415	+		IAI47_10615	0.12	+1.7
2,243,415	+		IAI47_10615	0.12	+0.9
2,243,415	+		IAI47_10615	0.12	-0.4
2,243,415	+		IAI47_10615	0.12	-0.3
2,243,416	-		IAI47_10615	0.12	-1.0
2,243,416	-		IAI47_10615	0.12	-0.3
2,243,532	+		IAI47_10615	0.26	-0.1
2,243,532	+		IAI47_10615	0.26	-0.4
2,243,532	+		IAI47_10615	0.26	-0.3
2,243,532	+		IAI47_10615	0.26	-1.3
2,243,532	+		IAI47_10615	0.26	+1.5
2,243,533	-		IAI47_10615	0.26	+0.9
2,243,535	-		IAI47_10615	0.26	-0.1
2,243,636	+		IAI47_10615	0.38	+0.7
2,243,636	+		IAI47_10615	0.38	-1.9
2,243,637	-		IAI47_10615	0.38	-0.5
2,243,637	-		IAI47_10615	0.38	+0.2
2,243,637	-		IAI47_10615	0.38	-0.1
2,243,678	+		IAI47_10615	0.43	+1.3
2,243,678	+		IAI47_10615	0.43	+2.0
2,243,679	-		IAI47_10615	0.43	-3.4
2,243,679	-		IAI47_10615	0.43	+0.2
2,243,679	-		IAI47_10615	0.43	-0.5
2,243,679	-		IAI47_10615	0.43	+0.6
2,243,693	+		IAI47_10615	0.44	+0.9
2,243,693	+		IAI47_10615	0.44	-0.6
2,243,694	-		IAI47_10615	0.44	+1.1
2,243,703	+		IAI47_10615	0.45	+1.0
2,243,775	+		IAI47_10615	0.54	-0.5
2,243,776	-		IAI47_10615	0.54	-0.9
2,243,787	+		IAI47_10615	0.55	-2.6
2,243,787	+		IAI47_10615	0.55	+0.1
2,243,788	-		IAI47_10615	0.55	-0.4
2,243,788	-		IAI47_10615	0.55	-0.5
2,243,788	-		IAI47_10615	0.55	+0.9
2,243,796	-		IAI47_10615	0.56	+4.0
2,243,796	-		IAI47_10615	0.56	-0.8
2,243,796	-		IAI47_10615	0.56	-1.6
2,243,886	+		IAI47_10615	0.67	-0.5
2,243,909	+		IAI47_10615	0.69	+0.4
2,243,909	+		IAI47_10615	0.69	-0.1
2,243,910	-		IAI47_10615	0.69	+0.1
2,243,912	+		IAI47_10615	0.70	+0.1
2,243,913	-		IAI47_10615	0.70	+0.2
2,243,954	+		IAI47_10615	0.75	+0.7
2,243,963	+		IAI47_10615	0.76	-0.1
2,243,963	+		IAI47_10615	0.76	-0.6
2,243,964	-		IAI47_10615	0.76	+1.5
2,243,964	-		IAI47_10615	0.76	-0.3
2,243,964	-		IAI47_10615	0.76	+1.2
2,243,984	+		IAI47_10615	0.78	-3.0
2,243,985	-		IAI47_10615	0.78	-0.7
2,243,998	+		IAI47_10615	0.80	-0.3
2,244,093	+				-0.4
2,244,093	+				-0.4
2,244,094	-				+0.1
2,244,094	-				+0.9
2,244,094	-				-0.1
2,244,094	-				+0.7
2,244,094	-				-1.0
2,244,100	+				-1.8
2,244,123	+				-0.4
2,244,165	-				-0.3
2,244,165	-				+0.1
2,244,167	+				-0.0
2,244,167	+				-1.4
2,244,168	-				-1.1
2,244,168	-				-1.4
2,244,171	+				-0.4
2,244,171	+				+0.4
2,244,172	-				+0.7
2,244,214	+				+0.3