Strain Fitness in Pantoea sp. MT58 around IAI47_09550

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,017,407	+				+0.5
2,017,407	+				-0.2
2,017,408	-				+0.9
2,017,408	-				+1.1
2,017,408	-				+0.2
2,017,409	+				+1.3
2,017,409	+				-0.2
2,017,410	-				+1.0
2,017,410	-				+1.4
2,017,410	-				+0.2
2,017,427	-				+1.0
2,017,427	-				-1.2
2,017,463	+				+0.1
2,017,463	+				-0.2
2,017,463	+				-0.7
2,017,464	-				-2.2
2,017,488	+				+0.0
2,017,488	+				-1.2
2,017,489	-				+1.3
2,017,525	+				-0.4
2,017,526	-				+0.2
2,017,526	-				-0.5
2,017,586	+		IAI47_09545	0.14	+0.4
2,017,623	+		IAI47_09545	0.19	+0.2
2,017,633	+		IAI47_09545	0.20	+0.5
2,017,633	+		IAI47_09545	0.20	+1.3
2,017,633	+		IAI47_09545	0.20	+0.2
2,017,633	+		IAI47_09545	0.20	+0.2
2,017,633	+		IAI47_09545	0.20	-1.0
2,017,633	+		IAI47_09545	0.20	+0.3
2,017,633	+		IAI47_09545	0.20	-0.2
2,017,633	+		IAI47_09545	0.20	+0.2
2,017,633	+		IAI47_09545	0.20	+0.5
2,017,634	-		IAI47_09545	0.21	+0.8
2,017,634	-		IAI47_09545	0.21	+0.8
2,017,634	-		IAI47_09545	0.21	-0.5
2,017,728	-		IAI47_09545	0.33	-0.8
2,017,805	+		IAI47_09545	0.44	+0.2
2,017,805	+		IAI47_09545	0.44	+0.4
2,017,805	+		IAI47_09545	0.44	+0.0
2,017,806	-		IAI47_09545	0.44	+1.0
2,017,806	-		IAI47_09545	0.44	-0.0
2,017,806	-		IAI47_09545	0.44	+0.0
2,017,806	-		IAI47_09545	0.44	+0.2
2,017,806	-		IAI47_09545	0.44	-0.5
2,017,832	+		IAI47_09545	0.48	+0.8
2,017,832	+		IAI47_09545	0.48	+1.3
2,017,832	+		IAI47_09545	0.48	+0.6
2,017,833	-		IAI47_09545	0.48	-0.2
2,017,919	-		IAI47_09545	0.60	+0.8
2,017,919	-		IAI47_09545	0.60	-0.2
2,017,949	+		IAI47_09545	0.64	+1.4
2,017,949	+		IAI47_09545	0.64	-1.6
2,017,950	-		IAI47_09545	0.64	-1.0
2,018,054	+		IAI47_09545	0.78	+1.3
2,018,055	-		IAI47_09545	0.79	+0.4
2,018,088	+		IAI47_09545	0.83	-1.2
2,018,135	+		IAI47_09545	0.90	-0.4
2,018,136	-		IAI47_09545	0.90	-0.2
2,018,152	+				-0.4
2,018,152	+				+1.0
2,018,194	+				+0.3
2,018,194	+				+1.4
2,018,195	-				+0.0
2,018,195	-				+0.8
2,018,210	+				-0.6
2,018,210	+				-1.5
2,018,210	+				+1.3
2,018,210	+				+0.5
2,018,211	-				+1.5
2,018,211	-				-0.1
2,018,211	-				+1.1
2,018,211	-				-0.4
2,018,211	-				+0.9
2,018,246	+				-0.9
2,018,247	-				+0.8
2,018,247	-				-1.0
2,018,247	-				-0.7
2,018,247	-				+1.6
2,018,269	+				-0.5
2,018,270	-				-0.1
2,018,270	-				+1.8
2,018,270	-				-1.2
2,018,270	-				-0.2
2,018,270	-				+0.3
2,018,303	+				-0.2
2,018,303	+				+0.0
2,018,303	+				-0.3
2,018,303	+				-0.7
2,018,304	-				-0.1
2,018,304	-				+1.8
2,018,304	-				+0.8
2,018,305	+				+0.8
2,018,305	+				-0.6
2,018,305	+				-1.0
2,018,305	+				-0.2
2,018,305	+				+0.5
2,018,305	+				-0.2
2,018,305	+				-0.8
2,018,305	+				-1.8
2,018,305	+				-1.1
2,018,306	-				-1.7
2,018,306	-				-1.1
2,018,306	-				-0.7
2,018,306	-				+2.1
2,018,307	+				+1.3
2,018,307	+				+0.1
2,018,307	+				-0.0
2,018,307	+				+0.3
2,018,307	+				+0.2
2,018,307	+				-0.2
2,018,308	-				+0.0
2,018,308	-				-0.6
2,018,308	-				+0.8
2,018,308	-				-1.0
2,018,308	-				-1.5
2,018,308	-				-1.8
2,018,317	+				+0.8
2,018,317	+				-1.0
2,018,317	+				-0.4
2,018,317	+				-0.2
2,018,317	+				-0.1
2,018,317	+				+1.0
2,018,317	+				+1.3
2,018,317	+				-0.1
2,018,318	-				-0.2
2,018,362	+				+0.9
2,018,371	-				-3.4
2,018,386	-				-0.6
2,018,386	-				+0.2
2,018,397	+				-1.4
2,018,417	+				-1.6
2,018,417	+				-1.0
2,018,417	+				-0.2
2,018,418	-				-2.4
2,018,418	-				-1.6
2,018,496	+		IAI47_09550	0.26	-0.8
2,018,496	+		IAI47_09550	0.26	-2.1
2,018,496	+		IAI47_09550	0.26	-0.6
2,018,496	+		IAI47_09550	0.26	-0.8
2,018,496	+		IAI47_09550	0.26	-1.2
2,018,497	-		IAI47_09550	0.26	-1.6
2,018,497	-		IAI47_09550	0.26	+0.0
2,018,497	-		IAI47_09550	0.26	-2.5
2,018,497	-		IAI47_09550	0.26	-1.2
2,018,500	+		IAI47_09550	0.27	-1.2
2,018,500	+		IAI47_09550	0.27	-1.2
2,018,500	+		IAI47_09550	0.27	+1.8
2,018,500	+		IAI47_09550	0.27	-1.0
2,018,536	-		IAI47_09550	0.36	+2.1
2,018,536	-		IAI47_09550	0.36	-1.6
2,018,552	+		IAI47_09550	0.39	-1.7
2,018,553	-		IAI47_09550	0.40	-2.2
2,018,574	-		IAI47_09550	0.45	-1.2
2,018,588	+		IAI47_09550	0.48	+0.3
2,018,588	+		IAI47_09550	0.48	-2.2
2,018,640	+		IAI47_09550	0.61	-2.8
2,018,663	+		IAI47_09550	0.66	-1.0
2,018,664	-		IAI47_09550	0.66	+1.1
2,018,800	+				+0.7
2,018,800	+				-0.8
2,018,800	+				-0.5
2,018,800	+				+1.2
2,018,800	+				+0.8
2,018,800	+				+0.0
2,018,800	+				-0.1
2,018,800	+				+0.8
2,018,801	-				-0.2
2,018,821	+				+0.8
2,018,822	-				-0.7
2,018,822	-				+0.2
2,018,824	+				-0.4
2,018,824	+				+0.4
2,018,825	-				-1.0
2,018,825	-				+0.9
2,018,825	-				-0.2
2,018,858	+				+1.2
2,018,858	+				-2.2
2,018,859	-				-1.2
2,018,868	+				+0.8
2,018,868	+				-1.9
2,018,868	+				+0.6
2,018,869	-				+0.8
2,018,869	-				-0.8
2,018,869	-				+0.0
2,018,869	-				+0.8
2,018,869	-				-0.7
2,018,937	+				-0.9
2,018,937	+				-0.8
2,018,937	+				-0.7
2,018,937	+				+1.9
2,018,937	+				+0.8
2,018,938	-				-0.7
2,018,938	-				-1.5
2,018,938	-				+0.1
2,018,938	-				-0.3
2,018,938	-				-1.0
2,018,938	-				+1.0
2,018,982	-				+0.6
2,018,982	-				+1.2
2,019,072	+				+0.8
2,019,072	+				+1.8
2,019,073	-				-0.2
2,019,115	-		IAI47_09555	0.13	-1.6
2,019,115	-		IAI47_09555	0.13	+0.3
2,019,132	+		IAI47_09555	0.14	-1.0
2,019,132	+		IAI47_09555	0.14	+0.2
2,019,132	+		IAI47_09555	0.14	-0.6
2,019,132	+		IAI47_09555	0.14	-1.0
2,019,132	+		IAI47_09555	0.14	+1.5
2,019,172	+		IAI47_09555	0.17	-0.5
2,019,172	+		IAI47_09555	0.17	-0.8
2,019,172	+		IAI47_09555	0.17	+0.2
2,019,201	+		IAI47_09555	0.19	-0.5
2,019,201	+		IAI47_09555	0.19	+1.2
2,019,202	-		IAI47_09555	0.19	+0.4
2,019,202	-		IAI47_09555	0.19	-0.2
2,019,202	-		IAI47_09555	0.19	-0.3
2,019,203	+		IAI47_09555	0.19	-0.2
2,019,204	-		IAI47_09555	0.19	-1.0
2,019,215	+		IAI47_09555	0.20	-0.2
2,019,216	-		IAI47_09555	0.20	+1.3
2,019,216	-		IAI47_09555	0.20	-1.2
2,019,216	-		IAI47_09555	0.20	-1.1
2,019,216	-		IAI47_09555	0.20	+1.0
2,019,219	+		IAI47_09555	0.20	+0.1
2,019,219	+		IAI47_09555	0.20	+1.3
2,019,259	+		IAI47_09555	0.23	+0.8
2,019,259	+		IAI47_09555	0.23	-1.2
2,019,260	-		IAI47_09555	0.23	+1.8
2,019,264	+		IAI47_09555	0.24	-1.0
2,019,264	+		IAI47_09555	0.24	-0.7
2,019,264	+		IAI47_09555	0.24	+0.4
2,019,264	+		IAI47_09555	0.24	+1.2
2,019,264	+		IAI47_09555	0.24	+1.3
2,019,265	-		IAI47_09555	0.24	+2.0
2,019,268	+		IAI47_09555	0.24	-1.2
2,019,268	+		IAI47_09555	0.24	-2.1
2,019,269	-		IAI47_09555	0.24	+0.8
2,019,269	-		IAI47_09555	0.24	-0.0
2,019,368	-		IAI47_09555	0.31	+0.3
2,019,438	+		IAI47_09555	0.36	-1.7
2,019,439	-		IAI47_09555	0.36	-0.4
2,019,439	-		IAI47_09555	0.36	+0.8
2,019,595	-		IAI47_09555	0.47	+0.3
2,019,595	-		IAI47_09555	0.47	-2.4
2,019,603	-		IAI47_09555	0.48	-0.7
2,019,694	+		IAI47_09555	0.54	+0.3
2,019,790	-		IAI47_09555	0.61	-0.2
2,019,790	-		IAI47_09555	0.61	-0.2