Strain Fitness in Pantoea sp. MT58 around IAI47_09235

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,943,799	+		IAI47_09225	0.73	+1.2
1,943,799	+		IAI47_09225	0.73	-1.4
1,943,800	-		IAI47_09225	0.73	+2.2
1,943,803	+		IAI47_09225	0.74	-1.2
1,943,803	+		IAI47_09225	0.74	-0.7
1,943,804	-		IAI47_09225	0.74	+0.8
1,943,845	+		IAI47_09225	0.78	-0.8
1,943,845	+		IAI47_09225	0.78	-0.3
1,943,845	+		IAI47_09225	0.78	+0.2
1,943,845	+		IAI47_09225	0.78	-0.8
1,943,846	-		IAI47_09225	0.78	-1.7
1,943,972	+		IAI47_09225	0.90	-0.6
1,943,972	+		IAI47_09225	0.90	-0.3
1,943,973	-		IAI47_09225	0.90	-0.6
1,943,973	-		IAI47_09225	0.90	-0.5
1,943,973	-		IAI47_09225	0.90	+1.4
1,943,973	-		IAI47_09225	0.90	-0.6
1,943,986	+				+1.2
1,944,005	-				-0.3
1,944,109	-				+0.4
1,944,129	-				+0.5
1,944,140	+				+0.0
1,944,180	+		IAI47_09230	0.21	+0.6
1,944,250	+		IAI47_09230	0.49	+0.3
1,944,250	+		IAI47_09230	0.49	-0.9
1,944,251	-		IAI47_09230	0.50	+1.1
1,944,251	-		IAI47_09230	0.50	+0.8
1,944,251	-		IAI47_09230	0.50	-1.0
1,944,251	-		IAI47_09230	0.50	+0.6
1,944,251	-		IAI47_09230	0.50	+0.6
1,944,251	-		IAI47_09230	0.50	+0.2
1,944,251	-		IAI47_09230	0.50	+0.5
1,944,292	+		IAI47_09230	0.66	+0.1
1,944,292	+		IAI47_09230	0.66	-0.6
1,944,293	-		IAI47_09230	0.67	+0.6
1,944,296	+		IAI47_09230	0.68	-1.6
1,944,296	+		IAI47_09230	0.68	+0.6
1,944,296	+		IAI47_09230	0.68	-0.6
1,944,297	-		IAI47_09230	0.68	-1.2
1,944,297	-		IAI47_09230	0.68	-0.5
1,944,297	-		IAI47_09230	0.68	-0.6
1,944,321	+		IAI47_09230	0.78	+0.2
1,944,322	-		IAI47_09230	0.78	+0.9
1,944,354	+				-1.0
1,944,354	+				+0.8
1,944,354	+				-0.8
1,944,355	-				+0.6
1,944,355	-				+1.8
1,944,377	+				-1.4
1,944,377	+				+0.1
1,944,377	+				+0.8
1,944,412	+				-0.2
1,944,412	+				-1.4
1,944,413	-				+1.1
1,944,413	-				+0.2
1,944,413	-				-0.1
1,944,415	-				+0.4
1,944,417	+				+0.7
1,944,417	+				-1.8
1,944,417	+				+0.1
1,944,418	-				-0.5
1,944,435	+				-1.2
1,944,436	-				-0.2
1,944,469	+				-0.5
1,944,469	+				-0.2
1,944,487	+				-0.5
1,944,487	+				-0.5
1,944,487	+				-0.8
1,944,488	-				+1.4
1,944,488	-				-2.0
1,944,488	-				-0.8
1,944,488	-				-2.4
1,944,488	-				+0.8
1,944,491	+				-0.9
1,944,491	+				-0.8
1,944,491	+				+0.8
1,944,491	+				-0.1
1,944,491	+				+0.8
1,944,491	+				+0.5
1,944,492	-				+0.3
1,944,517	+				-0.4
1,944,517	+				+0.2
1,944,517	+				+0.6
1,944,517	+				-0.3
1,944,518	-				+1.2
1,944,655	+				-0.6
1,944,671	+				+0.3
1,944,702	+				-1.5
1,944,702	+				+0.5
1,944,702	+				+0.2
1,944,702	+				+0.3
1,944,702	+				-0.4
1,944,731	+				+1.2
1,944,735	+				+2.1
1,946,992	+		IAI47_09235	0.86	+0.8
1,947,077	+		IAI47_09235	0.89	-0.5
1,947,077	+		IAI47_09235	0.89	-1.5
1,947,077	+		IAI47_09235	0.89	-1.8
1,947,244	+				-2.7
1,947,287	+				+0.8
1,947,287	+				-1.2
1,947,337	+				+0.4
1,947,337	+				-1.7
1,947,338	-				-0.8
1,947,339	+				-1.1
1,947,339	+				-0.2
1,947,339	+				+0.9
1,947,339	+				+1.8
1,947,346	+				-0.8
1,947,346	+				+0.2
1,947,368	+				-0.1
1,947,368	+				-0.4
1,947,368	+				-0.4
1,947,410	+				+0.2
1,947,410	+				-0.9
1,947,410	+				+0.7
1,947,411	-				-0.2
1,947,411	-				+0.2
1,947,411	-				+0.1
1,947,412	+				+1.3
1,947,413	-				+1.8
1,947,438	-				-0.2
1,947,446	-				-0.5
1,947,447	+				+1.0
1,947,447	+				+0.8
1,947,448	-				+0.2
1,947,448	-				-0.8
1,947,448	-				-1.2
1,947,454	+				+0.4
1,947,482	+				-1.2
1,947,482	+				+0.1
1,947,482	+				-0.7
1,947,482	+				-0.4
1,947,482	+				+0.2
1,947,482	+				+0.1
1,947,482	+				-2.0
1,947,483	-				+0.3
1,947,483	-				-0.2
1,947,483	-				+0.6
1,947,483	-				+0.1
1,947,497	+				-0.0
1,947,497	+				-0.2
1,947,498	-				+0.1
1,947,498	-				-0.2
1,947,504	+				-0.8
1,947,504	+				+1.1
1,947,504	+				-0.4
1,947,505	-				-0.2
1,947,505	-				-0.2
1,947,506	+				+0.1
1,947,506	+				-0.2
1,947,506	+				-1.2
1,947,506	+				-0.8
1,947,507	-				+0.1
1,947,507	-				-1.6
1,947,536	+				+0.8
1,947,631	+				+1.8
1,947,632	-				+0.8
1,947,632	-				+0.2
1,947,632	-				+0.8
1,947,813	+		IAI47_09240	0.27	-0.5
1,947,814	-		IAI47_09240	0.27	-1.2
1,947,839	-		IAI47_09240	0.29	-0.2
1,948,025	+		IAI47_09240	0.48	+0.8
1,948,025	+		IAI47_09240	0.48	-1.5
1,948,042	+		IAI47_09240	0.50	+1.8
1,948,141	+		IAI47_09240	0.60	-0.2
1,948,142	-		IAI47_09240	0.60	-0.8