Strain Fitness in Pantoea sp. MT58 around IAI47_08850

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,868,978	+		IAI47_08840	0.40	-0.8
1,868,999	+		IAI47_08840	0.42	+0.6
1,868,999	+		IAI47_08840	0.42	+1.0
1,869,000	-		IAI47_08840	0.42	-0.2
1,869,000	-		IAI47_08840	0.42	+1.7
1,869,232	+		IAI47_08840	0.63	+2.0
1,869,277	+		IAI47_08840	0.67	+0.4
1,869,278	-		IAI47_08840	0.67	-0.6
1,869,278	-		IAI47_08840	0.67	+0.3
1,869,278	-		IAI47_08840	0.67	+2.2
1,869,435	-		IAI47_08840	0.81	-0.1
1,869,435	-		IAI47_08840	0.81	+0.0
1,869,435	-		IAI47_08840	0.81	-0.7
1,869,448	+		IAI47_08840	0.82	-0.4
1,869,507	+		IAI47_08840	0.87	-1.4
1,869,507	+		IAI47_08840	0.87	+0.1
1,869,507	+		IAI47_08840	0.87	+0.1
1,869,529	+		IAI47_08840	0.89	+0.2
1,869,529	+		IAI47_08840	0.89	-0.1
1,869,537	+				-0.4
1,869,537	+				+0.8
1,869,538	-				+0.0
1,869,538	-				-0.4
1,869,540	+				+0.8
1,869,541	-				-0.2
1,869,559	+				+1.3
1,869,559	+				+0.2
1,869,559	+				+1.2
1,869,560	-				-0.0
1,869,575	-				+0.2
1,869,585	+				+0.5
1,869,647	+				+0.2
1,869,709	-				+0.4
1,869,709	-				+1.0
1,869,737	-		IAI47_08845	0.13	-0.2
1,869,737	-		IAI47_08845	0.13	-0.6
1,869,737	-		IAI47_08845	0.13	+0.3
1,870,040	-				+0.5
1,870,040	-				-1.4
1,870,040	-				-0.8
1,870,136	-		IAI47_08850	0.20	-0.8
1,870,136	-		IAI47_08850	0.20	+0.1
1,870,136	-		IAI47_08850	0.20	-0.9
1,870,136	-		IAI47_08850	0.20	+1.8
1,870,136	-		IAI47_08850	0.20	-0.5
1,870,136	-		IAI47_08850	0.20	-0.9
1,870,240	-		IAI47_08850	0.32	-2.5
1,870,241	+		IAI47_08850	0.33	-1.0
1,870,242	-		IAI47_08850	0.33	-1.5
1,870,324	-		IAI47_08850	0.43	-1.5
1,870,324	-		IAI47_08850	0.43	-1.0
1,870,363	-		IAI47_08850	0.48	-1.8
1,870,363	-		IAI47_08850	0.48	-2.4
1,870,363	-		IAI47_08850	0.48	-2.0
1,870,369	-		IAI47_08850	0.48	-0.8
1,870,369	-		IAI47_08850	0.48	-1.4
1,870,389	-		IAI47_08850	0.51	-1.0
1,870,389	-		IAI47_08850	0.51	-1.8
1,870,509	+		IAI47_08850	0.66	-0.5
1,870,510	-		IAI47_08850	0.66	-0.5
1,870,510	-		IAI47_08850	0.66	-0.0
1,870,538	+		IAI47_08850	0.69	+1.1
1,870,539	-		IAI47_08850	0.69	-0.7
1,870,539	-		IAI47_08850	0.69	-2.7
1,870,744	-				-0.2
1,870,767	+				-1.1
1,870,768	-				+0.4
1,870,768	-				-0.4
1,870,768	-				-1.0
1,870,768	-				-0.5
1,870,768	-				-0.0
1,870,777	-				-0.2
1,870,789	-				-0.9
1,870,789	-				+0.8
1,870,789	-				-2.2
1,870,789	-				+0.2
1,870,824	-				+1.0
1,870,828	-				+0.3
1,870,828	-				+0.4
1,870,828	-				+1.0
1,870,828	-				+0.8
1,870,956	+		IAI47_08855	0.19	-0.4
1,870,957	-		IAI47_08855	0.19	-1.2
1,870,957	-		IAI47_08855	0.19	+0.8
1,871,025	+		IAI47_08855	0.28	-1.4
1,871,026	-		IAI47_08855	0.29	-0.2
1,871,026	-		IAI47_08855	0.29	-2.0
1,871,026	-		IAI47_08855	0.29	+1.8
1,871,026	-		IAI47_08855	0.29	-0.4
1,871,079	+		IAI47_08855	0.36	-2.2
1,871,079	+		IAI47_08855	0.36	-0.8
1,871,103	-		IAI47_08855	0.39	+1.2
1,871,103	-		IAI47_08855	0.39	-1.3
1,871,267	-		IAI47_08855	0.62	+0.8
1,871,303	-		IAI47_08855	0.67	+0.8
1,871,313	+		IAI47_08855	0.69	+0.2
1,871,314	-		IAI47_08855	0.69	-1.1
1,871,314	-		IAI47_08855	0.69	-0.4
1,871,314	-		IAI47_08855	0.69	-1.3
1,871,318	-		IAI47_08855	0.69	-0.8
1,871,386	-		IAI47_08855	0.79	+1.8
1,871,386	-		IAI47_08855	0.79	-0.6
1,871,386	-		IAI47_08855	0.79	-0.5
1,871,390	-		IAI47_08855	0.80	-0.8
1,871,449	-		IAI47_08855	0.88	-1.8
1,871,449	-		IAI47_08855	0.88	-1.4
1,871,491	+				+0.1
1,871,492	-				-0.8
1,871,505	+				-0.2
1,871,505	+				-1.2
1,871,506	-				-1.0
1,871,506	-				+0.9
1,871,506	-				-1.5
1,871,562	+				+0.1
1,871,568	+				+0.1
1,871,613	-				-1.2
1,871,635	+				-1.2
1,871,635	+				-0.8
1,871,636	-				-1.0
1,871,637	+				-2.4
1,871,637	+				-3.0
1,871,638	-				-1.0
1,871,638	-				-1.2
1,871,638	-				-1.8
1,871,638	-				-1.2
1,871,638	-				+0.4
1,871,641	+				+1.4
1,871,641	+				-0.4
1,871,641	+				-0.6
1,871,641	+				-1.7
1,871,642	-				-0.8
1,871,642	-				+1.4
1,871,642	-				-2.4
1,871,642	-				-0.0
1,871,648	-				-0.5
1,871,648	-				-0.2
1,871,648	-				-1.0
1,871,649	+				-1.4
1,871,706	+				-0.6
1,871,706	+				-0.5
1,871,706	+				+0.3
1,871,707	-				+0.1
1,871,719	+		IAI47_08860	0.10	-0.4
1,871,733	+		IAI47_08860	0.15	+1.8
1,871,733	+		IAI47_08860	0.15	+3.1
1,871,733	+		IAI47_08860	0.15	-0.7
1,871,733	+		IAI47_08860	0.15	-0.9
1,871,734	-		IAI47_08860	0.16	-0.6
1,871,734	-		IAI47_08860	0.16	+0.8
1,871,739	+		IAI47_08860	0.17	+0.2
1,871,739	+		IAI47_08860	0.17	-1.1
1,871,739	+		IAI47_08860	0.17	-0.2
1,871,739	+		IAI47_08860	0.17	+0.1
1,871,740	-		IAI47_08860	0.18	-0.3
1,871,740	-		IAI47_08860	0.18	+0.5
1,871,740	-		IAI47_08860	0.18	-0.0
1,871,740	-		IAI47_08860	0.18	-1.9
1,871,740	-		IAI47_08860	0.18	+0.8
1,871,740	-		IAI47_08860	0.18	-0.8