Strain Fitness in Pantoea sp. MT58 around IAI47_08705

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,839,803	+		IAI47_08695	0.77	+1.1
1,839,803	+		IAI47_08695	0.77	+0.2
1,839,803	+		IAI47_08695	0.77	+0.8
1,839,803	+		IAI47_08695	0.77	+0.4
1,839,803	+		IAI47_08695	0.77	-0.2
1,839,803	+		IAI47_08695	0.77	-0.2
1,839,803	+		IAI47_08695	0.77	-0.8
1,839,803	+		IAI47_08695	0.77	+1.3
1,839,804	-		IAI47_08695	0.77	+1.2
1,839,804	-		IAI47_08695	0.77	-0.8
1,839,804	-		IAI47_08695	0.77	+0.6
1,839,804	-		IAI47_08695	0.77	-0.2
1,839,804	-		IAI47_08695	0.77	+0.8
1,839,804	-		IAI47_08695	0.77	-0.7
1,839,885	+				-0.2
1,839,893	+				-0.6
1,839,915	-				-0.0
1,839,938	+				+0.8
1,839,953	+				-0.1
1,839,953	+				-0.0
1,839,953	+				-0.3
1,839,954	-				-1.4
1,839,954	-				-1.3
1,839,954	-				-0.6
1,839,955	+				+1.5
1,839,955	+				+0.6
1,839,955	+				-0.5
1,839,955	+				+1.4
1,839,955	+				+0.1
1,839,955	+				+0.2
1,839,955	+				-0.2
1,839,956	-				-1.0
1,839,956	-				+0.4
1,839,956	-				-1.0
1,839,956	-				-2.0
1,839,998	+				-0.0
1,839,998	+				+0.6
1,839,998	+				+1.8
1,839,998	+				+0.8
1,840,027	+				-1.8
1,840,027	+				-1.4
1,840,027	+				-0.8
1,840,027	+				-0.8
1,840,036	+				-1.5
1,840,202	+		IAI47_08700	0.27	-1.4
1,840,203	-		IAI47_08700	0.27	-1.2
1,840,203	-		IAI47_08700	0.27	-2.9
1,840,204	+		IAI47_08700	0.27	-2.5
1,840,204	+		IAI47_08700	0.27	+0.1
1,840,204	+		IAI47_08700	0.27	-1.5
1,840,204	+		IAI47_08700	0.27	-0.4
1,840,205	-		IAI47_08700	0.27	-1.5
1,840,205	-		IAI47_08700	0.27	-2.5
1,840,226	+		IAI47_08700	0.30	-3.3
1,840,226	+		IAI47_08700	0.30	-0.9
1,840,299	+		IAI47_08700	0.41	-1.2
1,840,300	-		IAI47_08700	0.41	-1.2
1,840,438	+		IAI47_08700	0.60	-2.1
1,840,438	+		IAI47_08700	0.60	-0.8
1,840,438	+		IAI47_08700	0.60	-0.8
1,840,465	+		IAI47_08700	0.64	-0.8
1,840,564	+		IAI47_08700	0.78	-3.4
1,840,565	-		IAI47_08700	0.78	-3.4
1,840,591	+		IAI47_08700	0.82	-0.8
1,840,591	+		IAI47_08700	0.82	-1.1
1,840,592	-		IAI47_08700	0.82	-1.5
1,840,592	-		IAI47_08700	0.82	-0.4
1,840,594	+		IAI47_08700	0.82	-0.9
1,840,594	+		IAI47_08700	0.82	-1.2
1,840,595	-		IAI47_08700	0.83	-1.2
1,840,595	-		IAI47_08700	0.83	-3.2
1,840,595	-		IAI47_08700	0.83	-1.4
1,840,600	+		IAI47_08700	0.83	-0.6
1,840,600	+		IAI47_08700	0.83	+0.1
1,840,601	-				-2.0
1,840,641	+		IAI47_08700	0.89	-1.5
1,840,642	-		IAI47_08700	0.89	-0.4
1,840,763	+				-2.2
1,840,763	+				-2.8
1,840,763	+				-2.4
1,840,764	-				-1.8
1,840,777	+				-0.2
1,840,777	+				-2.0
1,840,777	+				-2.0
1,840,777	+				-1.8
1,840,778	-				-2.4
1,840,780	+				-2.7
1,840,780	+				-1.0
1,840,781	-				-1.0
1,840,811	+				-2.0
1,840,811	+				-2.0
1,840,812	-				-2.8
1,840,812	-				-1.5
1,840,812	-				-3.1
1,841,075	+		IAI47_08705	0.17	-0.2
1,841,075	+		IAI47_08705	0.17	-1.8
1,841,079	+		IAI47_08705	0.17	-0.8
1,841,079	+		IAI47_08705	0.17	-2.7
1,841,080	-		IAI47_08705	0.17	-3.6
1,841,082	-		IAI47_08705	0.17	-3.3
1,841,118	+		IAI47_08705	0.19	-0.2
1,841,119	-		IAI47_08705	0.19	-2.4
1,841,168	+		IAI47_08705	0.21	-1.8
1,841,218	+		IAI47_08705	0.24	-2.0
1,841,243	+		IAI47_08705	0.25	-3.1
1,841,244	-		IAI47_08705	0.25	-2.2
1,841,244	-		IAI47_08705	0.25	-0.8
1,841,244	-		IAI47_08705	0.25	-2.8
1,841,244	-		IAI47_08705	0.25	-1.8
1,841,244	-		IAI47_08705	0.25	-2.2
1,841,247	+		IAI47_08705	0.25	-2.8
1,841,247	+		IAI47_08705	0.25	-2.5
1,841,247	+		IAI47_08705	0.25	-0.2
1,841,248	-		IAI47_08705	0.25	+1.8
1,841,248	-		IAI47_08705	0.25	-4.1
1,841,248	-		IAI47_08705	0.25	-0.2
1,841,249	-		IAI47_08705	0.25	-1.5
1,841,309	+		IAI47_08705	0.28	-1.5
1,841,309	+		IAI47_08705	0.28	-1.5
1,841,317	-		IAI47_08705	0.28	-1.8
1,841,415	+		IAI47_08705	0.33	-3.1
1,841,415	+		IAI47_08705	0.33	-0.8
1,841,415	+		IAI47_08705	0.33	-1.8
1,841,415	+		IAI47_08705	0.33	-2.4
1,841,415	+		IAI47_08705	0.33	-2.4
1,841,415	+		IAI47_08705	0.33	-1.2
1,841,415	+		IAI47_08705	0.33	-2.9
1,841,415	+		IAI47_08705	0.33	-1.5
1,841,416	-		IAI47_08705	0.33	-1.5
1,841,416	-		IAI47_08705	0.33	-1.8
1,841,505	+		IAI47_08705	0.38	-2.2
1,841,505	+		IAI47_08705	0.38	-1.5
1,841,506	-		IAI47_08705	0.38	-2.0
1,841,506	-		IAI47_08705	0.38	-2.7
1,841,506	-		IAI47_08705	0.38	-2.4
1,841,506	-		IAI47_08705	0.38	-1.2
1,841,664	-		IAI47_08705	0.45	-2.4
1,841,829	+		IAI47_08705	0.54	-2.8
1,841,829	+		IAI47_08705	0.54	-1.5
1,841,829	+		IAI47_08705	0.54	-1.2
1,841,829	+		IAI47_08705	0.54	-1.2
1,841,830	-		IAI47_08705	0.54	-2.0
1,841,830	-		IAI47_08705	0.54	-3.2
1,841,830	-		IAI47_08705	0.54	-2.2
1,841,830	-		IAI47_08705	0.54	-1.2
1,841,830	-		IAI47_08705	0.54	-0.2
1,841,830	-		IAI47_08705	0.54	-3.4
1,841,830	-		IAI47_08705	0.54	-2.5
1,841,830	-		IAI47_08705	0.54	-2.2
1,841,912	+		IAI47_08705	0.58	-2.2
1,841,913	-		IAI47_08705	0.58	-2.0
1,841,945	-		IAI47_08705	0.59	-0.8
1,841,964	-		IAI47_08705	0.60	-1.8
1,841,964	-		IAI47_08705	0.60	-0.5
1,842,042	+		IAI47_08705	0.64	-2.0
1,842,042	+		IAI47_08705	0.64	-2.4
1,842,042	+		IAI47_08705	0.64	-1.2
1,842,043	-		IAI47_08705	0.64	-1.2
1,842,043	-		IAI47_08705	0.64	-2.0
1,842,043	-		IAI47_08705	0.64	-2.5
1,842,045	+		IAI47_08705	0.64	-2.9
1,842,045	+		IAI47_08705	0.64	-2.8
1,842,046	-		IAI47_08705	0.64	-0.2
1,842,046	-		IAI47_08705	0.64	-2.9
1,842,046	-		IAI47_08705	0.64	-2.8
1,842,046	-		IAI47_08705	0.64	-1.7
1,842,047	+		IAI47_08705	0.64	-2.0
1,842,048	-		IAI47_08705	0.64	-2.4
1,842,048	-		IAI47_08705	0.64	-2.4
1,842,123	+		IAI47_08705	0.68	-0.2
1,842,123	+		IAI47_08705	0.68	-1.5
1,842,124	-		IAI47_08705	0.68	-1.2
1,842,124	-		IAI47_08705	0.68	-2.7
1,842,161	+		IAI47_08705	0.70	-1.2
1,842,201	+		IAI47_08705	0.72	-1.5
1,842,201	+		IAI47_08705	0.72	-1.5
1,842,201	+		IAI47_08705	0.72	-1.5
1,842,201	+		IAI47_08705	0.72	-0.2
1,842,201	+		IAI47_08705	0.72	-1.5
1,842,201	+		IAI47_08705	0.72	-2.7
1,842,201	+		IAI47_08705	0.72	-3.1
1,842,201	+		IAI47_08705	0.72	-0.2
1,842,202	-		IAI47_08705	0.72	-1.8
1,842,202	-		IAI47_08705	0.72	-1.8
1,842,202	-		IAI47_08705	0.72	-2.7
1,842,235	+		IAI47_08705	0.73	-1.8
1,842,249	+		IAI47_08705	0.74	-1.8
1,842,249	+		IAI47_08705	0.74	-1.5
1,842,250	-		IAI47_08705	0.74	-1.8
1,842,250	-		IAI47_08705	0.74	-0.2
1,842,250	-		IAI47_08705	0.74	-2.8
1,842,251	+		IAI47_08705	0.74	-1.8
1,842,252	-		IAI47_08705	0.74	-3.3
1,842,252	-		IAI47_08705	0.74	-2.0
1,842,267	+		IAI47_08705	0.75	-2.5
1,842,268	-		IAI47_08705	0.75	-2.5
1,842,287	+		IAI47_08705	0.76	-2.2
1,842,335	-		IAI47_08705	0.78	-2.0
1,842,335	-		IAI47_08705	0.78	-0.2
1,842,405	+		IAI47_08705	0.82	-1.5
1,842,405	+		IAI47_08705	0.82	-3.0
1,842,405	+		IAI47_08705	0.82	-3.4
1,842,406	-		IAI47_08705	0.82	-2.2
1,842,406	-		IAI47_08705	0.82	-1.8
1,842,406	-		IAI47_08705	0.82	-1.5
1,842,425	+		IAI47_08705	0.83	-0.8
1,842,426	-		IAI47_08705	0.83	-1.3
1,842,492	+		IAI47_08705	0.86	-1.5
1,842,492	+		IAI47_08705	0.86	-2.5
1,842,493	-		IAI47_08705	0.86	+0.2
1,842,493	-		IAI47_08705	0.86	-3.2
1,842,493	-		IAI47_08705	0.86	-2.7
1,842,517	-		IAI47_08705	0.87	-2.2
1,842,542	+		IAI47_08705	0.88	-2.4
1,842,554	+		IAI47_08705	0.89	-1.8
1,842,555	-		IAI47_08705	0.89	-0.8
1,842,555	-		IAI47_08705	0.89	-1.5
1,842,555	-		IAI47_08705	0.89	-1.2
1,842,555	-		IAI47_08705	0.89	+0.8
1,842,679	-				-2.4
1,842,680	+				-1.8
1,842,681	-				-0.8
1,842,681	-				-1.8
1,842,697	-				-0.2
1,842,774	+				-0.9
1,842,829	+				+0.8
1,842,842	+				+0.6
1,842,842	+				-0.4
1,842,908	-				+0.4
1,842,908	-				-1.0
1,842,931	+				+0.8
1,842,975	-				-1.1
1,842,975	-				-0.6
1,842,986	+				+0.8
1,842,987	-				-0.2
1,842,987	-				-0.5
1,842,987	-				-0.6
1,842,987	-				+0.2
1,842,988	+				+1.3
1,842,988	+				+0.2
1,842,989	-				-0.7
1,842,989	-				-0.5
1,842,989	-				+0.8
1,842,989	-				+0.3
1,842,989	-				-0.6
1,843,001	+				-1.0
1,843,001	+				-3.0
1,843,001	+				+1.2
1,843,002	-				-0.0
1,843,002	-				+0.8
1,843,014	+				+0.1
1,843,030	+				-0.4
1,843,030	+				+0.1
1,843,030	+				-0.2
1,843,031	-				-0.8
1,843,071	+				+0.9
1,843,072	-				+0.8
1,843,072	-				-0.6
1,843,261	+		IAI47_08710	0.27	-0.2
1,843,261	+		IAI47_08710	0.27	+0.3
1,843,261	+		IAI47_08710	0.27	+0.4
1,843,261	+		IAI47_08710	0.27	-0.2
1,843,261	+		IAI47_08710	0.27	-0.6
1,843,261	+		IAI47_08710	0.27	-0.5
1,843,261	+		IAI47_08710	0.27	-2.9
1,843,261	+		IAI47_08710	0.27	-1.8
1,843,262	-		IAI47_08710	0.27	-0.4
1,843,262	-		IAI47_08710	0.27	+0.5
1,843,264	+		IAI47_08710	0.27	+0.8
1,843,264	+		IAI47_08710	0.27	-1.4
1,843,264	+		IAI47_08710	0.27	-1.1
1,843,265	-		IAI47_08710	0.28	-0.4
1,843,265	-		IAI47_08710	0.28	+1.9
1,843,265	-		IAI47_08710	0.28	-0.1
1,843,265	-		IAI47_08710	0.28	-1.2
1,843,265	-		IAI47_08710	0.28	-0.6
1,843,265	-		IAI47_08710	0.28	-2.4
1,843,265	-		IAI47_08710	0.28	+0.2
1,843,265	-		IAI47_08710	0.28	-1.4
1,843,265	-		IAI47_08710	0.28	-0.5
1,843,265	-		IAI47_08710	0.28	-0.5
1,843,265	-		IAI47_08710	0.28	-0.7
1,843,316	+		IAI47_08710	0.33	-1.2
1,843,317	-		IAI47_08710	0.33	-1.2
1,843,317	-		IAI47_08710	0.33	-0.5
1,843,317	-		IAI47_08710	0.33	-2.0
1,843,317	-		IAI47_08710	0.33	-0.2
1,843,360	+		IAI47_08710	0.38	+1.3
1,843,361	-		IAI47_08710	0.38	-0.2
1,843,552	+		IAI47_08710	0.60	+0.4
1,843,552	+		IAI47_08710	0.60	-0.3
1,843,553	-		IAI47_08710	0.60	+0.4
1,843,604	+		IAI47_08710	0.66	-1.4
1,843,604	+		IAI47_08710	0.66	+0.7
1,843,642	+		IAI47_08710	0.70	+0.6
1,843,643	-		IAI47_08710	0.70	-0.3
1,843,643	-		IAI47_08710	0.70	-0.0
1,843,660	+		IAI47_08710	0.72	-2.2
1,843,660	+		IAI47_08710	0.72	+2.0
1,843,660	+		IAI47_08710	0.72	-0.9
1,843,661	-		IAI47_08710	0.72	-0.8
1,843,661	-		IAI47_08710	0.72	+1.1
1,843,661	-		IAI47_08710	0.72	+0.3
1,843,661	-		IAI47_08710	0.72	+0.2
1,843,766	+		IAI47_08710	0.84	+0.1
1,843,766	+		IAI47_08710	0.84	+0.5
1,843,767	-		IAI47_08710	0.84	+0.2
1,843,767	-		IAI47_08710	0.84	-1.1
1,843,767	-		IAI47_08710	0.84	-3.5