Strain Fitness in Pantoea sp. MT58 around IAI47_08215

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,735,574	-				+0.8
1,735,585	+				-0.8
1,735,585	+				+0.8
1,735,585	+				-0.0
1,735,614	-				-0.8
1,735,736	+				-1.0
1,735,737	-				+0.0
1,735,748	+				-0.2
1,735,748	+				+0.9
1,735,756	+				-0.9
1,735,756	+				-2.4
1,735,756	+				+2.0
1,735,756	+				-0.2
1,735,757	-				+0.8
1,735,757	-				+0.1
1,735,757	-				+0.6
1,735,902	+		IAI47_08210	0.26	+0.4
1,735,902	+		IAI47_08210	0.26	-0.2
1,735,902	+		IAI47_08210	0.26	+0.2
1,735,902	+		IAI47_08210	0.26	-0.2
1,735,902	+		IAI47_08210	0.26	-1.0
1,735,903	-		IAI47_08210	0.27	-2.5
1,735,903	-		IAI47_08210	0.27	-1.4
1,735,903	-		IAI47_08210	0.27	+0.8
1,735,903	-		IAI47_08210	0.27	+0.5
1,735,903	-		IAI47_08210	0.27	-0.2
1,735,903	-		IAI47_08210	0.27	-0.9
1,736,052	-		IAI47_08210	0.45	-0.2
1,736,052	-		IAI47_08210	0.45	+0.6
1,736,052	-		IAI47_08210	0.45	-0.5
1,736,052	-		IAI47_08210	0.45	-0.8
1,736,109	+		IAI47_08210	0.52	+0.4
1,736,110	-		IAI47_08210	0.52	+1.6
1,736,188	+		IAI47_08210	0.61	-1.2
1,736,189	-		IAI47_08210	0.61	-0.2
1,736,211	+		IAI47_08210	0.64	-0.2
1,736,212	-		IAI47_08210	0.64	+1.4
1,736,212	-		IAI47_08210	0.64	+0.4
1,736,249	+		IAI47_08210	0.68	+0.3
1,736,249	+		IAI47_08210	0.68	-0.6
1,736,250	-		IAI47_08210	0.69	-0.9
1,736,250	-		IAI47_08210	0.69	-1.0
1,736,343	+		IAI47_08210	0.80	+1.2
1,736,343	+		IAI47_08210	0.80	-0.1
1,736,344	-		IAI47_08210	0.80	-0.2
1,736,344	-		IAI47_08210	0.80	+0.3
1,736,344	-		IAI47_08210	0.80	+1.2
1,736,344	-		IAI47_08210	0.80	-0.1
1,736,344	-		IAI47_08210	0.80	-0.5
1,736,346	+		IAI47_08210	0.80	+0.2
1,736,346	+		IAI47_08210	0.80	+1.4
1,736,346	+		IAI47_08210	0.80	+0.0
1,736,347	-		IAI47_08210	0.80	-0.5
1,736,351	+		IAI47_08210	0.81	+0.6
1,736,352	-		IAI47_08210	0.81	-0.2
1,736,398	+		IAI47_08210	0.87	-1.2
1,736,435	-				-0.1
1,736,435	-				-1.2
1,736,472	+				-0.0
1,736,472	+				+1.1
1,736,506	+				-0.0
1,736,506	+				+1.1
1,736,507	-				-1.0
1,736,507	-				+0.2
1,736,507	-				+0.1
1,736,507	-				+0.3
1,736,518	+				-2.4
1,736,519	-				+0.8
1,736,519	-				+1.3
1,736,547	+				-0.0
1,736,547	+				-0.8
1,736,548	-				-0.2
1,736,548	-				+1.8
1,736,548	-				-1.0
1,736,557	+				+0.5
1,736,557	+				+0.5
1,736,689	-		IAI47_08215	0.11	+0.7
1,736,846	+		IAI47_08215	0.25	+0.6
1,736,847	-		IAI47_08215	0.25	+1.3
1,736,938	+		IAI47_08215	0.34	+0.2
1,736,938	+		IAI47_08215	0.34	-1.8
1,736,938	+		IAI47_08215	0.34	+0.2
1,736,938	+		IAI47_08215	0.34	-0.5
1,736,938	+		IAI47_08215	0.34	+0.6
1,736,938	+		IAI47_08215	0.34	+0.5
1,736,939	-		IAI47_08215	0.34	-0.6
1,736,946	+		IAI47_08215	0.34	-1.7
1,736,946	+		IAI47_08215	0.34	+1.0
1,736,947	-		IAI47_08215	0.34	+0.6
1,736,947	-		IAI47_08215	0.34	+1.4
1,736,947	-		IAI47_08215	0.34	-1.0
1,736,947	-		IAI47_08215	0.34	+0.4
1,736,966	+		IAI47_08215	0.36	-0.2
1,736,967	-		IAI47_08215	0.36	-0.2
1,736,967	-		IAI47_08215	0.36	+0.4
1,736,969	-		IAI47_08215	0.36	+0.0
1,736,969	-		IAI47_08215	0.36	-0.2
1,736,969	-		IAI47_08215	0.36	+1.4
1,736,969	-		IAI47_08215	0.36	-0.1
1,736,975	+		IAI47_08215	0.37	+1.0
1,736,975	+		IAI47_08215	0.37	-0.9
1,736,975	+		IAI47_08215	0.37	-0.8
1,736,975	+		IAI47_08215	0.37	-0.5
1,736,975	+		IAI47_08215	0.37	+0.8
1,736,975	+		IAI47_08215	0.37	+0.8
1,736,975	+		IAI47_08215	0.37	-0.7
1,736,976	-		IAI47_08215	0.37	-0.6
1,736,976	-		IAI47_08215	0.37	-1.2
1,736,976	-		IAI47_08215	0.37	-0.7
1,736,976	-		IAI47_08215	0.37	+1.5
1,737,008	-		IAI47_08215	0.40	-0.2
1,737,023	-		IAI47_08215	0.41	+1.1
1,737,023	-		IAI47_08215	0.41	-0.2
1,737,086	+		IAI47_08215	0.47	+0.0
1,737,089	+		IAI47_08215	0.47	+1.9
1,737,089	+		IAI47_08215	0.47	+0.2
1,737,089	+		IAI47_08215	0.47	+1.2
1,737,089	+		IAI47_08215	0.47	+0.5
1,737,089	+		IAI47_08215	0.47	+0.8
1,737,090	-		IAI47_08215	0.47	-0.5
1,737,090	-		IAI47_08215	0.47	-0.7
1,737,090	-		IAI47_08215	0.47	-0.0
1,737,090	-		IAI47_08215	0.47	+0.4
1,737,161	+		IAI47_08215	0.53	+0.2
1,737,161	+		IAI47_08215	0.53	-1.1
1,737,161	+		IAI47_08215	0.53	+0.5
1,737,161	+		IAI47_08215	0.53	-0.1
1,737,185	-		IAI47_08215	0.56	-1.9
1,737,185	-		IAI47_08215	0.56	+0.2
1,737,254	+		IAI47_08215	0.62	+0.1
1,737,255	-		IAI47_08215	0.62	+0.0
1,737,255	-		IAI47_08215	0.62	-0.6
1,737,255	-		IAI47_08215	0.62	-0.0
1,737,262	+		IAI47_08215	0.63	+0.4
1,737,262	+		IAI47_08215	0.63	+1.4
1,737,271	+		IAI47_08215	0.63	+1.8
1,737,325	+		IAI47_08215	0.68	+1.2
1,737,326	-		IAI47_08215	0.68	+1.8
1,737,326	-		IAI47_08215	0.68	-0.3
1,737,398	+		IAI47_08215	0.75	-0.4
1,737,398	+		IAI47_08215	0.75	+1.2
1,737,398	+		IAI47_08215	0.75	+0.6
1,737,398	+		IAI47_08215	0.75	-0.6
1,737,399	-		IAI47_08215	0.75	-1.6
1,737,465	+		IAI47_08215	0.81	+0.2
1,737,505	+		IAI47_08215	0.84	+1.6
1,737,505	+		IAI47_08215	0.84	+0.3
1,737,505	+		IAI47_08215	0.84	-0.5
1,737,506	-		IAI47_08215	0.84	-0.1
1,737,506	-		IAI47_08215	0.84	+0.2
1,737,506	-		IAI47_08215	0.84	-0.6
1,737,506	-		IAI47_08215	0.84	+1.1
1,737,517	+		IAI47_08215	0.85	+1.3
1,737,517	+		IAI47_08215	0.85	+0.3
1,737,517	+		IAI47_08215	0.85	-0.0
1,737,518	-		IAI47_08215	0.85	+0.6
1,737,578	+				+0.0
1,737,651	+				-0.3
1,737,651	+				+0.0
1,737,651	+				+0.2
1,737,677	+				+0.6
1,737,678	-				-0.5
1,737,856	+		IAI47_08220	0.14	+2.5
1,737,856	+		IAI47_08220	0.14	-0.7
1,737,930	+		IAI47_08220	0.19	+1.1
1,737,931	-		IAI47_08220	0.19	-0.1
1,737,931	-		IAI47_08220	0.19	+0.2
1,737,936	+		IAI47_08220	0.20	+0.3
1,737,936	+		IAI47_08220	0.20	+0.2
1,737,937	-		IAI47_08220	0.20	-1.0
1,737,965	+		IAI47_08220	0.22	+0.8
1,737,965	+		IAI47_08220	0.22	-1.5
1,737,966	-		IAI47_08220	0.22	-0.1
1,737,966	-		IAI47_08220	0.22	-1.1
1,737,979	-		IAI47_08220	0.23	+0.0
1,738,021	-		IAI47_08220	0.27	-1.3
1,738,021	-		IAI47_08220	0.27	-1.3
1,738,077	+		IAI47_08220	0.31	-0.2
1,738,077	+		IAI47_08220	0.31	-0.2
1,738,078	-		IAI47_08220	0.31	-0.4
1,738,089	+		IAI47_08220	0.32	+0.8
1,738,089	+		IAI47_08220	0.32	+0.2
1,738,089	+		IAI47_08220	0.32	-0.0
1,738,089	+		IAI47_08220	0.32	-1.8
1,738,089	+		IAI47_08220	0.32	-0.9
1,738,089	+		IAI47_08220	0.32	+0.3
1,738,090	-		IAI47_08220	0.32	-1.2
1,738,090	-		IAI47_08220	0.32	+0.5
1,738,090	-		IAI47_08220	0.32	-0.8
1,738,090	-		IAI47_08220	0.32	+0.2
1,738,090	-		IAI47_08220	0.32	-0.8
1,738,090	-		IAI47_08220	0.32	-1.3
1,738,090	-		IAI47_08220	0.32	+0.4
1,738,090	-		IAI47_08220	0.32	+1.1
1,738,091	-		IAI47_08220	0.32	+0.2
1,738,236	+		IAI47_08220	0.43	+1.2
1,738,237	-		IAI47_08220	0.43	+0.8
1,738,237	-		IAI47_08220	0.43	+1.1
1,738,248	+		IAI47_08220	0.44	-0.9
1,738,249	-		IAI47_08220	0.44	-0.0
1,738,249	-		IAI47_08220	0.44	+1.6
1,738,284	+		IAI47_08220	0.47	-0.8
1,738,284	+		IAI47_08220	0.47	+0.3
1,738,284	+		IAI47_08220	0.47	-2.0
1,738,284	+		IAI47_08220	0.47	+0.6
1,738,284	+		IAI47_08220	0.47	+1.1
1,738,284	+		IAI47_08220	0.47	+0.1
1,738,284	+		IAI47_08220	0.47	-0.1
1,738,284	+		IAI47_08220	0.47	-0.5
1,738,284	+		IAI47_08220	0.47	-1.0
1,738,285	-		IAI47_08220	0.47	+1.3
1,738,285	-		IAI47_08220	0.47	+0.0
1,738,285	-		IAI47_08220	0.47	-0.4
1,738,285	-		IAI47_08220	0.47	-2.4
1,738,285	-		IAI47_08220	0.47	-0.4
1,738,304	+		IAI47_08220	0.49	-0.1
1,738,304	+		IAI47_08220	0.49	+0.2
1,738,305	-		IAI47_08220	0.49	+0.3
1,738,326	+		IAI47_08220	0.50	+1.1
1,738,327	-		IAI47_08220	0.50	-0.7
1,738,386	+		IAI47_08220	0.55	-2.2
1,738,386	+		IAI47_08220	0.55	-0.5
1,738,387	-		IAI47_08220	0.55	+0.0
1,738,387	-		IAI47_08220	0.55	+0.6
1,738,387	-		IAI47_08220	0.55	-0.2
1,738,387	-		IAI47_08220	0.55	-1.3
1,738,428	+		IAI47_08220	0.58	-1.4
1,738,428	+		IAI47_08220	0.58	+1.9
1,738,429	-		IAI47_08220	0.58	-0.2
1,738,429	-		IAI47_08220	0.58	-0.1
1,738,492	+		IAI47_08220	0.63	-0.5
1,738,492	+		IAI47_08220	0.63	+0.3
1,738,492	+		IAI47_08220	0.63	+0.8
1,738,492	+		IAI47_08220	0.63	+0.7
1,738,493	-		IAI47_08220	0.63	+0.3
1,738,493	-		IAI47_08220	0.63	-0.6
1,738,502	+		IAI47_08220	0.64	-0.4
1,738,503	-		IAI47_08220	0.64	-0.0
1,738,503	-		IAI47_08220	0.64	-0.8
1,738,509	+		IAI47_08220	0.65	-0.2
1,738,509	+		IAI47_08220	0.65	-0.4
1,738,563	+		IAI47_08220	0.69	-0.8
1,738,564	-		IAI47_08220	0.69	-0.2
1,738,630	+		IAI47_08220	0.74	+0.8
1,738,631	-		IAI47_08220	0.74	-0.2